1M0F | pdb_00001m0f

Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth 1]	d1m0f1_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Bacteriophage alpha3 assembly	(Escherichia phage alpha3 ) [TaxId: 10849 ],	SCOPe (2.08)
B [auth 2]	d1m0f2_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Bacteriophage alpha3 assembly	(Escherichia phage alpha3 ) [TaxId: 10849 ],	SCOPe (2.08)
C [auth 3]	d1m0f3_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Bacteriophage alpha3 assembly	(Escherichia phage alpha3 ) [TaxId: 10849 ],	SCOPe (2.08)
D [auth 4]	d1m0f4_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Bacteriophage alpha3 assembly	(Escherichia phage alpha3 ) [TaxId: 10849 ],	SCOPe (2.08)
E [auth F]	d1m0ff_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Bacteriophage alpha3 assembly	(Escherichia phage alpha3 ) [TaxId: 10849 ],	SCOPe (2.08)
F [auth G]	d1m0fg_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Bacteriophage alpha3 assembly	(Escherichia phage alpha3 ) [TaxId: 10849 ],	SCOPe (2.08)
G [auth B]	d1m0fb_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Bacteriophage alpha3 assembly	(Escherichia phage alpha3 ) [TaxId: 10849 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth 1]	SCOP2B Superfamily	Scaffolding protein gpD of bacteriophage procapsid	8032652	3000749	SCOP2B (2022-06-29)
B [auth 2]	SCOP2B Superfamily	Scaffolding protein gpD of bacteriophage procapsid	8032652	3000749	SCOP2B (2022-06-29)
C [auth 3]	SCOP2B Superfamily	Scaffolding protein gpD of bacteriophage procapsid	8032652	3000749	SCOP2B (2022-06-29)
D [auth 4]	SCOP2B Superfamily	Scaffolding protein gpD of bacteriophage procapsid	8032652	3000749	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	ssDNA viruses	8043143	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth 1]	gpD	e1m0f11	A: alpha arrays	X: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	H: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	T: Scaffolding protein gpD of bacteriophage procapsid	F: gpD	ECOD (1.6)
B [auth 2]	gpD	e1m0f21	A: alpha arrays	X: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	H: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	T: Scaffolding protein gpD of bacteriophage procapsid	F: gpD	ECOD (1.6)
C [auth 3]	gpD	e1m0f31	A: alpha arrays	X: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	H: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	T: Scaffolding protein gpD of bacteriophage procapsid	F: gpD	ECOD (1.6)
D [auth 4]	gpD	e1m0f41	A: alpha arrays	X: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	H: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	T: Scaffolding protein gpD of bacteriophage procapsid	F: gpD	ECOD (1.6)
E [auth F]	Phage_F	e1m0fF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_F	ECOD (1.6)
F [auth G]	Phage_G	e1m0fG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_G	ECOD (1.6)
G [auth B]	Phage_B	e1m0fB1	A: a+b complex topology	X: Scaffolding protein GPB (From Topology)	H: Scaffolding protein GPB (From Topology)	T: Scaffolding protein GPB	F: Phage_B	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F [auth G]	PF02306	Major spike protein (G protein) (Phage_G)	Major spike protein (G protein)	This is a family of proteins from single-stranded DNA bacteriophages. Five G proteins, each a tight beta barrel, from twelve surface spikes.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1], B [auth 2], C [auth 3], D [auth 4]	Scaffolding protein D	-	virus maturation viral life cycle viral capsid assembly viral procapsid maturation cellular component biogenesis cellular component organization virion assembly cellular component assembly viral process cellular process cellular component organization or biogenesis	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region
E [auth F]	Capsid Protein F	structural molecule activity	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid
F [auth G]	Major Spike Protein G	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	viral capsid virion component
G [auth B]	Scaffolding Protein B	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1], B [auth 2], C [auth 3], D [auth 4]	IPR036632	Scaffold protein D superfamily	Homologous Superfamily
A [auth 1], B [auth 2], C [auth 3], D [auth 4]	IPR004196	Scaffold protein D	Family
E [auth F]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
E [auth F]	IPR003514	Microviridae F protein	Family
E [auth F]	IPR037002	Microviridae F protein superfamily	Homologous Superfamily
F [auth G]	IPR029053	Viral coat protein subunit	Homologous Superfamily
F [auth G]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
F [auth G]	IPR003515	Major spike protein G	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.