1VF5
Crystal Structure of Cytochrome b6f Complex from M.laminosus
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8032842 | 3000966 | SCOP2B (2022-06-29) |
J [auth O] | SCOP2B Superfamily | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8032842 | 3000966 | SCOP2B (2022-06-29) |
C | SCOP2 Family | cytochrome f, large domain | 8023329 | 4002080 | SCOP2 (2022-06-29) |
C | SCOP2 Family | Cytochrome f, small domain | 8023330 | 4002935 | SCOP2 (2022-06-29) |
C | SCOP2 Family | Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor | 8023332 | 4001680 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | cytochrome f, large domain | 8035709 | 3000800 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Rudiment single hybrid motif | 8035710 | 3001910 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor | 8035712 | 3000244 | SCOP2 (2022-06-29) |
K [auth P] | SCOP2B Superfamily | cytochrome f, large domain | 8035709 | 3000800 | SCOP2B (2022-06-29) |
K [auth P] | SCOP2B Superfamily | Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor | 8035712 | 3000244 | SCOP2B (2022-06-29) |
K [auth P] | SCOP2B Superfamily | Rudiment single hybrid motif | 8035710 | 3001910 | SCOP2B (2022-06-29) |
K [auth P] | SCOP2B Superfamily | cytochrome f, large domain | 8035709 | 3000800 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ISP transmembrane anchor | 8039996 | 3000753 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ISP domain | 8039995 | 3000233 | SCOP2B (2022-06-29) |
L [auth Q] | SCOP2B Superfamily | ISP domain | 8039995 | 3000233 | SCOP2B (2022-06-29) |
L [auth Q] | SCOP2B Superfamily | ISP transmembrane anchor | 8039996 | 3000753 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | PetL subunit of the cytochrome b6f complex | 8032843 | 3000253 | SCOP2B (2022-06-29) |
M [auth R] | SCOP2B Superfamily | PetL subunit of the cytochrome b6f complex | 8032843 | 3000253 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | PetM subunit of the cytochrome b6f complex | 8039998 | 3000262 | SCOP2B (2022-06-29) |
N [auth S] | SCOP2B Superfamily | PetM subunit of the cytochrome b6f complex | 8039998 | 3000262 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | PetG subunit of the cytochrome b6f complex | 8039999 | 3000270 | SCOP2B (2022-06-29) |
O [auth T] | SCOP2B Superfamily | PetG subunit of the cytochrome b6f complex | 8039999 | 3000270 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | PetN subunit of the cytochrome b6f complex | 8032844 | 3000279 | SCOP2B (2022-06-29) |
P [auth U] | SCOP2B Superfamily | PetN subunit of the cytochrome b6f complex | 8032844 | 3000279 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Transmembrane di-heme cytochromes | 8039994 | 3000517 | SCOP2B (2022-06-29) |
I [auth N] | SCOP2B Superfamily | Transmembrane di-heme cytochromes | 8039994 | 3000517 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Cytochrom_B_C | e1vf5B1 | A: alpha bundles | X: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: Cytochrom_B_C | ECOD (1.6) |
J [auth O] | Cytochrom_B_C | e1vf5O1 | A: alpha bundles | X: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: Cytochrom_B_C | ECOD (1.6) |
C | Apocytochr_F_N | e1vf5C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Apocytochr_F_N | ECOD (1.6) |
C | Apocytochr_F_C_N | e1vf5C3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: Apocytochr_F_C_N | ECOD (1.6) |
C | Apocytochr_F_C_C | e1vf5C2 | A: extended segments | X: Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor (From Topology) | H: Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor (From Topology) | T: Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor | F: Apocytochr_F_C_C | ECOD (1.6) |
K [auth P] | Apocytochr_F_N | e1vf5P1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Apocytochr_F_N | ECOD (1.6) |
K [auth P] | Apocytochr_F_C_N | e1vf5P3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: Apocytochr_F_C_N | ECOD (1.6) |
K [auth P] | Apocytochr_F_C_C | e1vf5P2 | A: extended segments | X: Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor (From Topology) | H: Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor (From Topology) | T: Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor | F: Apocytochr_F_C_C | ECOD (1.6) |
D | Rieske_cytochrome_b6f | e1vf5D6 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: Rieske_cytochrome_b6f | ECOD (1.6) |
D | Rieske_4 | e1vf5D4 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: Rieske_4 | ECOD (1.6) |
D | CytB6-F_Fe-S | e1vf5D5 | A: extended segments | X: iron-sulfur subunit (ISP) transmembrane anchor (From Topology) | H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology) | T: iron-sulfur subunit (ISP) transmembrane anchor | F: CytB6-F_Fe-S | ECOD (1.6) |
L [auth Q] | Rieske_cytochrome_b6f | e1vf5Q6 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: Rieske_cytochrome_b6f | ECOD (1.6) |
L [auth Q] | Rieske_4 | e1vf5Q4 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: Rieske_4 | ECOD (1.6) |
L [auth Q] | CytB6-F_Fe-S | e1vf5Q5 | A: extended segments | X: iron-sulfur subunit (ISP) transmembrane anchor (From Topology) | H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology) | T: iron-sulfur subunit (ISP) transmembrane anchor | F: CytB6-F_Fe-S | ECOD (1.6) |
E | PetL_1 | e1vf5E1 | A: extended segments | X: PetL subunit of the cytochrome b6f complex (From Topology) | H: PetL subunit of the cytochrome b6f complex (From Topology) | T: PetL subunit of the cytochrome b6f complex | F: PetL_1 | ECOD (1.6) |
M [auth R] | PetL_1 | e1vf5R1 | A: extended segments | X: PetL subunit of the cytochrome b6f complex (From Topology) | H: PetL subunit of the cytochrome b6f complex (From Topology) | T: PetL subunit of the cytochrome b6f complex | F: PetL_1 | ECOD (1.6) |
F | PetM | e1vf5F1 | A: extended segments | X: PetM subunit of the cytochrome b6f complex (From Topology) | H: PetM subunit of the cytochrome b6f complex (From Topology) | T: PetM subunit of the cytochrome b6f complex | F: PetM | ECOD (1.6) |
N [auth S] | PetM | e1vf5S1 | A: extended segments | X: PetM subunit of the cytochrome b6f complex (From Topology) | H: PetM subunit of the cytochrome b6f complex (From Topology) | T: PetM subunit of the cytochrome b6f complex | F: PetM | ECOD (1.6) |
H | PetN | e1vf5H1 | A: extended segments | X: PetN subunit of the cytochrome b6f complex (From Topology) | H: PetN subunit of the cytochrome b6f complex (From Topology) | T: PetN subunit of the cytochrome b6f complex | F: PetN | ECOD (1.6) |
P [auth U] | PetN | e1vf5U1 | A: extended segments | X: PetN subunit of the cytochrome b6f complex (From Topology) | H: PetN subunit of the cytochrome b6f complex (From Topology) | T: PetN subunit of the cytochrome b6f complex | F: PetN | ECOD (1.6) |
A | Cytochrome_B | e1vf5A1 | A: alpha bundles | X: Transmembrane heme-binding four-helical bundle (From Homology) | H: Transmembrane heme-binding four-helical bundle | T: Transmembrane di-heme cytochromes | F: Cytochrome_B | ECOD (1.6) |
I [auth N] | Cytochrome_B | e1vf5N1 | A: alpha bundles | X: Transmembrane heme-binding four-helical bundle (From Homology) | H: Transmembrane heme-binding four-helical bundle | T: Transmembrane di-heme cytochromes | F: Cytochrome_B | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B, J [auth O] | PF00032 | Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C) | Cytochrome b(C-terminal)/b6/petD | - | Domain |
C, K [auth P] | PF16639 | Apocytochrome F, N-terminal (Apocytochr_F_N) | Apocytochrome F, N-terminal | This is the N-terminal domain of cytochrome f. It is a soluble lumen-side domain [1]. | Domain |
C, K [auth P] | PF01333 | Apocytochrome F, C-terminal (Apocytochr_F_C) | Apocytochrome F, C-terminal | This is a sub-family of cytochrome C. See Pfam:PF00034. | Domain |
D, L [auth Q] | PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain |
F, N [auth S] | PF08041 | PetM family of cytochrome b6f complex subunit 7 (PetM) | PetM family of cytochrome b6f complex subunit 7 | - | Family |
A, I [auth N] | PF00033 | Cytochrome b/b6/petB (Cytochrome_B) | Cytochrome b/b6/petB | - | Domain |