2LS0
Solution Structure of the Target Recognition Domain of Zoocin A
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 1] | SCOP2 Family | Zoocin TRD-like | 8046138 | 4004898 | SCOP2 (2022-06-29) |
A [auth 1] | SCOP2 Superfamily | Zoocin TRD-like | 8092959 | 3002648 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | ZoocinA_TRD | e2ls011 | A: beta barrels | X: Target recognition domain of zoocin A (From Topology) | H: Target recognition domain of zoocin A (From Topology) | T: Target recognition domain of zoocin A | F: ZoocinA_TRD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth 1] | 2.40.50.670 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Target recognition domain of lytic exoenzyme | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 1] | PF16775 | Target recognition domain of lytic exoenzyme (ZoocinA_TRD) | Target recognition domain of lytic exoenzyme | ZoocinA_TRD is domain found downstream of various lytic enzymes, such as peptidase M23 and phage lysins. The domain is composed of strands of antiparallel beta sheet with one short alpha helix at the C-terminal end [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth 1] | Zoocin A endopeptidase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth 1] | IPR050570 | Bacterial cell wall metabolism enzyme | Family |
A [auth 1] | IPR031898 | Lytic exoenzyme, target recognition domain | Domain |
A [auth 1] | IPR016047 | Peptidase M23 | Domain |
A [auth 1] | IPR038263 | Lytic exoenzyme, target recognition domain superfamily | Homologous Superfamily |
A [auth 1] | IPR011055 | Duplicated hybrid motif | Homologous Superfamily |