3DED | pdb_00003ded

C-terminal domain of Probable hemolysin from Chromobacterium violaceum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3deda1	Alpha and beta proteins (a+b)	FAD-binding/transporter-associated domain-like	FAD-binding/transporter-associated domain-like	CorC/HlyC domain-like	Probable hemolysin CV0231	(Chromobacterium violaceum ) [TaxId: 536 ],	SCOPe (2.08)
B	d3dedb_	Alpha and beta proteins (a+b)	FAD-binding/transporter-associated domain-like	FAD-binding/transporter-associated domain-like	CorC/HlyC domain-like	Probable hemolysin CV0231	(Chromobacterium violaceum ) [TaxId: 536 ],	SCOPe (2.08)
C	d3dedc_	Alpha and beta proteins (a+b)	FAD-binding/transporter-associated domain-like	FAD-binding/transporter-associated domain-like	CorC/HlyC domain-like	Probable hemolysin CV0231	(Chromobacterium violaceum ) [TaxId: 536 ],	SCOPe (2.08)
D	d3dedd_	Alpha and beta proteins (a+b)	FAD-binding/transporter-associated domain-like	FAD-binding/transporter-associated domain-like	CorC/HlyC domain-like	Probable hemolysin CV0231	(Chromobacterium violaceum ) [TaxId: 536 ],	SCOPe (2.08)
E	d3dede_	Alpha and beta proteins (a+b)	FAD-binding/transporter-associated domain-like	FAD-binding/transporter-associated domain-like	CorC/HlyC domain-like	Probable hemolysin CV0231	(Chromobacterium violaceum ) [TaxId: 536 ],	SCOPe (2.08)
F	d3dedf_	Alpha and beta proteins (a+b)	FAD-binding/transporter-associated domain-like	FAD-binding/transporter-associated domain-like	CorC/HlyC domain-like	Probable hemolysin CV0231	(Chromobacterium violaceum ) [TaxId: 536 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	CorC/HlyC domain-like	8017487	4002490	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FAD-binding/transporter-associated domain-like	8054385	3000913	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	FAD-binding/transporter-associated domain-like	8054385	3000913	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	FAD-binding/transporter-associated domain-like	8054385	3000913	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	FAD-binding/transporter-associated domain-like	8054385	3000913	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	FAD-binding/transporter-associated domain-like	8054385	3000913	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	FAD-binding/transporter-associated domain-like	8054385	3000913	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CorC_HlyC	e3dedA1	A: a+b complex topology	X: FAD-binding domain-like	H: CorC/HlyC domain-like (From Topology)	T: CorC/HlyC domain-like	F: CorC_HlyC	ECOD (1.6)
B	CorC_HlyC	e3dedB1	A: a+b complex topology	X: FAD-binding domain-like	H: CorC/HlyC domain-like (From Topology)	T: CorC/HlyC domain-like	F: CorC_HlyC	ECOD (1.6)
C	CorC_HlyC	e3dedC1	A: a+b complex topology	X: FAD-binding domain-like	H: CorC/HlyC domain-like (From Topology)	T: CorC/HlyC domain-like	F: CorC_HlyC	ECOD (1.6)
D	CorC_HlyC	e3dedD1	A: a+b complex topology	X: FAD-binding domain-like	H: CorC/HlyC domain-like (From Topology)	T: CorC/HlyC domain-like	F: CorC_HlyC	ECOD (1.6)
E	CorC_HlyC	e3dedE1	A: a+b complex topology	X: FAD-binding domain-like	H: CorC/HlyC domain-like (From Topology)	T: CorC/HlyC domain-like	F: CorC_HlyC	ECOD (1.6)
F	CorC_HlyC	e3dedF1	A: a+b complex topology	X: FAD-binding domain-like	H: CorC/HlyC domain-like (From Topology)	T: CorC/HlyC domain-like	F: CorC_HlyC	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 3	CATH (4.3.0)
B	3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 3	CATH (4.3.0)
C	3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 3	CATH (4.3.0)
D	3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 3	CATH (4.3.0)
E	3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 3	CATH (4.3.0)
F	3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF03471	Transporter associated domain (CorC_HlyC)	Transporter associated domain	This small domain is found in a family of proteins with the Pfam:PF01595 domain and two CBS domains with this domain found at the C-terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also f ...	This small domain is found in a family of proteins with the Pfam:PF01595 domain and two CBS domains with this domain found at the C-terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Probable hemolysin	cation binding ion binding binding metal ion binding small molecule binding flavin adenine dinucleotide binding nucleoside phosphate binding anion binding nucleotide binding heterocyclic compound binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR046342	CBS domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR044751	Ion transporter-like, CBS domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR000644	CBS domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR002550	CNNM, transmembrane domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR036318	FAD-binding, type PCMH-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR005170	Transporter-associated domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR016169	FAD-binding, type PCMH, subdomain 2	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.