X-RAY DIFFRACTION
Starting Model(s)
Initial Refinement Model(s) | |||
---|---|---|---|
Type | Source | Accession Code | Details |
experimental model | PDB | 4INS | 2ZINC INSULIN DIMER (PDB ENTRY 4INS) |
Crystallization
Crystalization Experiments | ||||
---|---|---|---|---|
ID | Method | pH | Temperature | Details |
1 | batch method | 7.44 | BATCH, 1.7MG/ML INSULIN, 0.02 ZINC ACETATE, 0.7% (V/V) PHENOL, 0.34M SODIUM CHLORIDE, pH 7.44, batch method |
Crystal Properties | |
---|---|
Matthews coefficient | Solvent content |
2.43 | 49.45 |
Crystal Data
Unit Cell | |
---|---|
Length ( Å ) | Angle ( ˚ ) |
a = 61.23 | α = 90 |
b = 61.65 | β = 110.5 |
c = 48.05 | γ = 90 |
Symmetry | |
---|---|
Space Group | P 1 21 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 293 | IMAGE PLATE | RIGAKU | 1992-09-28 |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | ROTATING ANODE | RIGAKU RUH2R |
Data Collection
Overall | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 2 | 30 | 98.6 | 0.079 | 9.3 | 3.1 | 22429 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 2 | 2.07 | 90.1 | 0.227 | 3.3 | 2.5 |
Refinement
Statistics | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diffraction ID | Structure Solution Method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Work (Depositor) | R-Free (Depositor) | Mean Isotropic B | ||||||||
X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | 2ZINC INSULIN DIMER (PDB ENTRY 4INS) | 2 | 8 | 22429 | 22051 | 98.6 | 0.178 |
RMS Deviations | |
---|---|
Key | Refinement Restraint Deviation |
p_staggered_tor | 17.9 |
p_transverse_tor | 15.4 |
p_planar_tor | 2.3 |
p_xyhbond_nbd | 0.286 |
p_multtor_nbd | 0.245 |
p_chiral_restr | 0.18 |
p_singtor_nbd | 0.177 |
p_planar_d | 0.053 |
p_angle_d | 0.048 |
p_bond_d | 0.019 |
Non-Hydrogen Atoms Used in Refinement | |
---|---|
Non-Hydrogen Atoms | Number |
Protein Atoms | 2331 |
Nucleic Acid Atoms | |
Solvent Atoms | 331 |
Heterogen Atoms | 53 |
Software
Software | |
---|---|
Software Name | Purpose |
DENZO | data reduction |
CCP4 | data reduction |
CCP4 | model building |
PROLSQ | refinement |
CCP4 | data scaling |
CCP4 | phasing |