Association of subunit d (Vma6p) and E (Vma4p) with G (Vma10p) and the NMR solution structure of subunit G (G1-59) of the Saccharomyces cerevisiae V1VO ATPase
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 25 mM sodium phosphate | 90% H2O/10% D2O | 0 | 6.8 | AMBIENT | 288 | |
2 | 2D 1H-13C HSQC | 25 mM sodium phosphate | 90% H2O/10% D2O | 0 | 6.8 | AMBIENT | 288 | |
3 | 3D CBCA(CO)NH | 25 mM sodium phosphate | 90% H2O/10% D2O | 0 | 6.8 | AMBIENT | 288 | |
4 | 3D HNCACB | 25 mM sodium phosphate | 90% H2O/10% D2O | 0 | 6.8 | AMBIENT | 288 | |
5 | 3D HNCO | 25 mM sodium phosphate | 90% H2O/10% D2O | 0 | 6.8 | AMBIENT | 288 | |
6 | 3D H(CCO)NH | 25 mM sodium phosphate | 90% H2O/10% D2O | 0 | 6.8 | AMBIENT | 288 | |
7 | 3D C(CO)NH | 25 mM sodium phosphate | 90% H2O/10% D2O | 0 | 6.8 | AMBIENT | 288 | |
8 | 3D 1H-15N NOESY | 25 mM sodium phosphate | 90% H2O/10% D2O | 0 | 6.8 | AMBIENT | 288 | |
9 | 3D 1H-13C NOESY | 25 mM sodium phosphate | 90% H2O/10% D2O | 0 | 6.8 | AMBIENT | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | 3.0 | GUNTERT, P. ET AL. |
2 | collection | TopSpin | Bruker Biospin | |
3 | data analysis | Sparky | Goddard, T. et al. | |
4 | data analysis | MOLMOL | Koradi, R. et al. |