TR-SMX open state structure (10-15ms) of bacteriorhodopsin
Serial Crystallography (SX)
Serial Crystallography (SX)
Serial Crystallography (SX)
Crystallization
Crystalization Experiments |
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ID | Method | pH | Temperature | Details |
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1 | LIPIDIC CUBIC PHASE | 5.6 | 294 | 100 mM Na/K Phosphate buffer pH 5.6 30 % PEG 2000 |
Crystal Properties |
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Matthews coefficient | Solvent content |
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2.47 | 50.28 |
Crystal Data
Unit Cell |
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Length ( Å ) | Angle ( ˚ ) |
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a = 62 | α = 90 |
b = 62 | β = 90 |
c = 110.3 | γ = 120 |
Diffraction
Diffraction Experiment |
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol |
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1 | 1 | x-ray | 298 | PIXEL | DECTRIS EIGER X 16M | | 2018-07-22 | M | SINGLE WAVELENGTH |
2 | 1 | x-ray | 298 | PIXEL | DECTRIS EIGER X 16M | | 2018-07-22 | M | SINGLE WAVELENGTH |
3 | 1 | x-ray | 298 | PIXEL | DECTRIS EIGER X 16M | | 2018-07-22 | M | SINGLE WAVELENGTH |
Radiation Source |
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
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1 | SYNCHROTRON | SLS BEAMLINE X06SA | 1.0 | SLS | X06SA |
2 | SYNCHROTRON | SLS BEAMLINE X06SA | 1.0 | SLS | X06SA |
3 | SYNCHROTRON | SLS BEAMLINE X06SA | 1.0 | SLS | X06SA |
Serial Crystallography
Sample delivery method |
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Diffraction ID | Description | Sample Delivery Method |
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1 | | injection |
2 | | injection |
3 | | injection |
Injection |
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Diffraction ID | Description | Flow Rate | Injector Diameter | Injection Power | Injector Nozzle | Filter Size | Carrier Solvent |
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1 | | undefined (µl/min) | undefined (µm) | | | | LCP |
2 | | undefined (µl/min) | undefined (µm) | | | | LCP |
3 | | undefined (µl/min) | undefined (µm) | | | | LCP |
Data Collection
Overall |
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | CC (Half) | R Split (All) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot |
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3 | 2.1 | 38.5 | 100 | 0.99 | 0.034 | 13.3 | 984.9 | | 13882 | | | |
Highest Resolution Shell |
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | CC (Half) | R Split (All) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) |
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3 | 2.1 | 2.18 | 100 | | 0.52 | 0.86 | 1.33 | 24.6 | |
Refinement
Statistics |
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Cut-off Sigma (F) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | Mean Isotropic B |
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X-RAY DIFFRACTION | | FREE R-VALUE | 2.6 | 31 | 0.02 | 6477 | 410 | 87.33 | 0.3202 | 0.3173 | 0.3599 | 92.17 |
Temperature Factor Modeling |
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] |
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| | | | | |
RMS Deviations |
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Key | Refinement Restraint Deviation |
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f_dihedral_angle_d | 8.4725 |
f_angle_d | 0.3682 |
f_chiral_restr | 0.0341 |
f_plane_restr | 0.0033 |
f_bond_d | 0.0016 |
Non-Hydrogen Atoms Used in Refinement |
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Non-Hydrogen Atoms | Number |
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Protein Atoms | 1748 |
Nucleic Acid Atoms | |
Solvent Atoms | 7 |
Heterogen Atoms | |
Software
Software |
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Software Name | Purpose |
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PHENIX | refinement |
PHENIX | refinement |
CrystFEL | data reduction |
CrystFEL | data scaling |
PHASER | phasing |