Ligand validation:4IN7


GGD: NONADEC-10-ENOIC ACID 2-[3,4-DIHYDROXY-6-HYDROXYMETHYL-5-(3,4,5-TRIHYDROXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-2-YLOXY)-TETRAHYDRO-PYRAN-2-YLOXY] -1-OCTADEC-9-ENOYLOXYMETHYL-ETHYL ESTER

GGD is a Ligand Of Interest in 4IN7 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4IN7_GGD_H_307Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4IN7_GGD_H_307Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4IN7_GGD_H_307 2% 29% 0.411 0.7491.15 1.68 3 143085%0.8507
1M3X_GGD_M_902 2% 1% 0.358 0.6582.92 4.32 20 33 15085%0.8507
4IN6_GGD_H_301 1% 31% 0.392 0.6171.13 1.6 3 110085%0.8507
4N7K_GGD_H_305 0% 35% 0.538 0.6211.04 1.52 3 122085%0.8507
2J8C_GGD_M_1313 0% 13% 0.364 0.432 2.14 1.79 12 18 2085%0.8507
4N7L_GGD_H_306 0% 39% 0.563 0.6231.01 1.37 3 101085%0.8507