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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Akasaka, K."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Bos taurus (5)
	Gallus gallus (2)
	Streptococcus sp. (2)
	Gymnema sylvestre (1)
	Moritella profunda (1)
	Staphylococcus carnosus (1)

Taxonomy

	Eukaryota (8)
	Bacteria (4)

Experimental Method

	SOLUTION NMR (12)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

	Protein (12)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	2.0 - 2.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (5)
	2005 - 2009 (7)
	2010 - 2014 (1)

Enzyme Classification Name

	Hydrolases (2)
	Oxidoreductases (1)

Symmetry Type

Asymmetric (12)

SCOP Classification

	Alpha and beta proteins (a+b) (8)
	Small proteins (3)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 14 of 14 Structures

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1GUR \| pdb_00001gur	Download File View File

GURMARIN, A SWEET TASTE-SUPPRESSING POLYPEPTIDE, NMR, 10 STRUCTURES

Arai, K., Ishima, R., Morikawa, S., Imoto, T., Yoshimura, S., Aimoto, S., Akasaka, K.

(1995) J Biomol NMR 5: 297-305

Released	1996-08-01
Method	SOLUTION NMR
Organisms	Gymnema sylvestre
Macromolecule	GURMARIN (protein)

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1GXV \| pdb_00001gxv	Download File View File

Solution structure of lysozyme at low and high pressure

Refaee, M., Akasaka, K., Williamson, M.

(2003) J Mol Biology 327: 857

Released	2003-03-27
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	LYSOZYME C (protein)

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1GXX \| pdb_00001gxx	Download File View File

Solution structure of lysozyme at low and high pressure

Refaee, M., Akasaka, K., Williamson, M.

(2003) J Mol Biology 327: 857

Released	2003-03-27
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	LYSOZYME C (protein)

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1OA5 \| pdb_00001oa5	Download File View File

The solution structure of bovine pancreatic trypsin inhibitor at high pressure

Williamson, M.P., Akasaka, K., Refaee, M.

(2003) Protein Sci 12: 1971

Released	2003-08-28
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	PANCREATIC TRYPSIN INHIBITOR (protein)

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1OA6 \| pdb_00001oa6	Download File View File

The solution structure of bovine pancreatic trypsin inhibitor at high pressure

Williamson, M.P., Akasaka, K., Refaee, M.

(2003) Protein Sci 12: 1971

Released	2003-08-28
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	PANCREATIC TRYPSIN INHIBITOR (protein)

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1QR5 \| pdb_00001qr5	Download File View File

SOLUTION STRUCTURE OF HISTIDINE CONTAINING PROTEIN (HPR) FROM STAPHYLOCOCCUS CARNOSUS

Kalbitzer, H.R., Gorler, A., Li, H., Dubovskii, P.V., Hengstenberg, W., Kowolik, C., Yamada, H., Akasaka, K.

(2000) Protein Sci 9: 693-703

Released	2000-06-21
Method	SOLUTION NMR
Organisms	Staphylococcus carnosus
Macromolecule	PHOSPHOCARRIER PROTEIN HPR (protein)

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1V80 \| pdb_00001v80	Download File View File

Solution structures of ubiquitin at 30 bar and 3 kbar

Kitahara, R., Yokoyama, S., Akasaka, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Mol Biology 347: 277-285

Released	2005-02-15
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	Ubiquitin/60s ribosomal protein L40 fusion (protein)

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1V81 \| pdb_00001v81	Download File View File

Solution structures of ubiquitin at 30 bar and 3 kbar

Kitahara, R., Yokoyama, S., Akasaka, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Mol Biology 347: 277-285

Released	2005-02-15
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	Ubiquitin/60s ribosomal protein L40 fusion (protein)

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2J52 \| pdb_00002j52	Download File View File

Solution Structure of GB1 domain Protein G and low and high pressure.

Wilton, D.J., Tunnicliffe, R.B., Kamatari, Y.O., Akasaka, K., Williamson, M.P.

(2008) Proteins 71: 1432

Released	2007-09-25
Method	SOLUTION NMR
Organisms	Streptococcus sp.
Macromolecule	IMMUNOGLOBULIN G-BINDING PROTEIN G (protein)

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2J53 \| pdb_00002j53	Download File View File

Solution Structure of GB1 domain Protein G and low and high pressure.

Wilton, D.J., Tunnicliffe, R.B., Kamatari, Y.O., Akasaka, K., Williamson, M.P.

(2008) Proteins 71: 1432

Released	2007-09-25
Method	SOLUTION NMR
Organisms	Streptococcus sp.
Macromolecule	IMMUNOGLOBULIN G-BINDING PROTEIN G (protein)

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2VAH \| pdb_00002vah	Download File View File

Solution structure of a B-DNA hairpin at low pressure.

Williamson, M.P., Wilton, D.J., Ghosh, M., Chary, K.V.A., Akasaka, K.

(2008) Nucleic Acids Res 36: 4032

Released	2007-09-11
Method	SOLUTION NMR
Macromolecule	5'-D(APGPGPAPTPCPCPTPUPTP TPGPGPAPTPCPCPT)-3' (nucleic acid)

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2VAI \| pdb_00002vai	Download File View File

Solution structure of a B-DNA hairpin at high pressure

Williamson, M.P., Wilton, D.J., Ghosh, M., Chary, K.V.A., Akasaka, K.

(2008) Nucleic Acids Res 36: 4032-4037

Released	2007-09-11
Method	SOLUTION NMR
Macromolecule	5'-D(APGPGPAPTPCPCPTPUPTP TPGPGPAPTPCPCPT)-3' (nucleic acid)

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2ZCC \| pdb_00002zcc	Download File View File

Ubiquitin crystallized under high pressure

Kitahara, R., Tanaka, T., Yamashita, M., Araya, K., Yokoyama, S., Akasaka, K., Taniguchi, Y., Kato, M.

To be published

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Bos taurus
Macromolecule	Ubiquitin (protein)
Unique Ligands	ZN

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2ZZA \| pdb_00002zza	Download File View File

Moritella profunda Dihydrofolate reductase complex with NADP+ and Folate

Hata, K., Tanaka, T., Murakami, C., Ohmae, E., Gekko, K., Shiro, Y., Akasaka, K.

To be published

Released	2010-02-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Moritella profunda
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	1PE, FOL, NAP

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1GUR | pdb_00001gur

GURMARIN, A SWEET TASTE-SUPPRESSING POLYPEPTIDE, NMR, 10 STRUCTURES

1GXV | pdb_00001gxv

Solution structure of lysozyme at low and high pressure

1GXX | pdb_00001gxx

Solution structure of lysozyme at low and high pressure

1OA5 | pdb_00001oa5

The solution structure of bovine pancreatic trypsin inhibitor at high pressure

1OA6 | pdb_00001oa6

The solution structure of bovine pancreatic trypsin inhibitor at high pressure

1QR5 | pdb_00001qr5

SOLUTION STRUCTURE OF HISTIDINE CONTAINING PROTEIN (HPR) FROM STAPHYLOCOCCUS CARNOSUS

1V80 | pdb_00001v80

Solution structures of ubiquitin at 30 bar and 3 kbar

1V81 | pdb_00001v81

Solution structures of ubiquitin at 30 bar and 3 kbar

2J52 | pdb_00002j52

Solution Structure of GB1 domain Protein G and low and high pressure.

2J53 | pdb_00002j53

Solution Structure of GB1 domain Protein G and low and high pressure.

2VAH | pdb_00002vah

Solution structure of a B-DNA hairpin at low pressure.

2VAI | pdb_00002vai

Solution structure of a B-DNA hairpin at high pressure

2ZCC | pdb_00002zcc

Ubiquitin crystallized under high pressure

2ZZA | pdb_00002zza

Moritella profunda Dihydrofolate reductase complex with NADP+ and Folate

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1GUR | pdb_00001gur

1GXV | pdb_00001gxv

1GXX | pdb_00001gxx

1OA5 | pdb_00001oa5

1OA6 | pdb_00001oa6

1QR5 | pdb_00001qr5

1V80 | pdb_00001v80

1V81 | pdb_00001v81

2J52 | pdb_00002j52

2J53 | pdb_00002j53

2VAH | pdb_00002vah

2VAI | pdb_00002vai

2ZCC | pdb_00002zcc

2ZZA | pdb_00002zza