RCSB PDB: Search

1TE6 \| pdb_00001te6	Download File View File

Crystal Structure of Human Neuron Specific Enolase at 1.8 angstrom

Chai, G., Brewer, J., Lovelace, L., Aoki, T., Minor, W., Lebioda, L.

(2004) J Mol Biology 341: 1015-1021

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Gamma enolase (protein)
Unique Ligands	CL, MG, PO4, TRS

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1X3X \| pdb_00001x3x	Download File View File

Crystal Structure of Cytochrome b5 from Ascaris suum

Yokota, T., Nakajima, Y., Yamakura, F., Sugio, S., Hashimoto, M., Takamiya, S., Aoki, T.

(2006) Biochem J 394: 437-447

Released	2006-06-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Ascaris suum
Macromolecule	Cytochrome b5 (protein)
Unique Ligands	HEM, SO4

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2DJL \| pdb_00002djl	Download File View File

Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with succinate

Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.

To be published

Released	2007-06-26
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Trypanosoma cruzi
Macromolecule	dihydroorotate dehydrogenase (protein)
Unique Ligands	FMN, GOL, NCO, SIN

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2DJX \| pdb_00002djx	Download File View File

Crystal structure of native Trypanosoma cruzi dihydroorotate dehydrogenase

Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.

To be published

Released	2007-06-26
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Trypanosoma cruzi
Macromolecule	Dihydroorotate Dehydrogenase (protein)
Unique Ligands	FMN, NCO

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2E68 \| pdb_00002e68	Download File View File

Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with dihydroorotate

Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.

To be published

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Trypanosoma cruzi
Macromolecule	Dihydroorotate dehydrogenase (protein)
Unique Ligands	DOR, FMN, GOL, NCO

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2E6A \| pdb_00002e6a	Download File View File

Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with orotate

Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.

To be published

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Trypanosoma cruzi
Macromolecule	Dihydroorotate dehydrogenase (protein)
Unique Ligands	FMN, GOL, NCO, ORO

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2E6D \| pdb_00002e6d	Download File View File

Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with fumarate

Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.

(2008) Biochemistry 47: 10881-10891

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Trypanosoma cruzi
Macromolecule	Dihydroorotate dehydrogenase (protein)
Unique Ligands	FMN, FUM, GOL, NCO

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2E6F \| pdb_00002e6f	Download File View File

Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with oxonate

Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.

To be published

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Trypanosoma cruzi
Macromolecule	Dihydroorotate dehydrogenase (protein)
Unique Ligands	FMN, GOL, NCO, OXC

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3VV9 \| pdb_00003vv9	Download File View File

Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei

Shiba, T., Kido, Y., Sakamoto, K., Inaoka, D.K., Tsuge, C., Tatsumi, R., Balogun, E.O., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Saimoto, H., Moore, A.L., Harada, S., Kita, K.

(2013) Proc Natl Acad Sci U S A 110: 4580-4585

Released	2013-03-13
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Alternative oxidase, mitochondrial (protein)
Unique Ligands	FE, OH

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3VVA \| pdb_00003vva	Download File View File

Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei with ascofuranone derivative

Shiba, T., Kido, Y., Sakamoto, K., Inaoka, D.K., Tsuge, C., Tatsumi, R., Balogun, E.O., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Saimoto, H., Moore, A.L., Harada, S., Kita, K.

(2013) Proc Natl Acad Sci U S A 110: 4580-4585

Released	2013-03-13
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Alternative oxidase, mitochondrial (protein)
Unique Ligands	CHW, FE, OH

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3W1A \| pdb_00003w1a	Download File View File

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-halogenated orotate derivatives

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-11-13
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, FOT, GOL, NCO

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3W1L \| pdb_00003w1l	Download File View File

Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-chloroorotate

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-11-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, GOL, HRO, NCO

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3W1M \| pdb_00003w1m	Download File View File

Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-bromoorotate

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A.

To be published

Released	2013-11-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, GOL, NCO, RRO

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3W1N \| pdb_00003w1n	Download File View File

Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-iodoorotate

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, GOL, IRO, NCO

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3W1P \| pdb_00003w1p	Download File View File

Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-ethenyl-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-11-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	ERO, FMN, GOL, NCO

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3W1Q \| pdb_00003w1q	Download File View File

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with NL-2

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-11-20
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, GOL, NCO, YRO

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3W1R \| pdb_00003w1r	Download File View File

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-045a

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-11-20
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, GOL, MRO, NCO

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3W1T \| pdb_00003w1t	Download File View File

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-095

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, GOL, NCO, WRO

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3W1U \| pdb_00003w1u	Download File View File

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-111

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, GOL, LRO, NCO

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3W1X \| pdb_00003w1x	Download File View File

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-121

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, GOL, NCO, XRO

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3W22 \| pdb_00003w22	Download File View File

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-125

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	2RO, FMN, GOL, NCO

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3W23 \| pdb_00003w23	Download File View File

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-131

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	3RO, FMN, GOL, NCO

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3W2J \| pdb_00003w2j	Download File View File

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-135

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, GOL, NCO, QRO

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3W2K \| pdb_00003w2k	Download File View File

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-165

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, GOL, KRO, NCO

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3W2L \| pdb_00003w2l	Download File View File

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-169

Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.

To be published

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Dihydroorotate dehydrogenase (fumarate) (protein)
Unique Ligands	FMN, GOL, NCO, VRO

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1TE6 | pdb_00001te6

1X3X | pdb_00001x3x

2DJL | pdb_00002djl

2DJX | pdb_00002djx

2E68 | pdb_00002e68

2E6A | pdb_00002e6a

2E6D | pdb_00002e6d

2E6F | pdb_00002e6f

3VV9 | pdb_00003vv9

3VVA | pdb_00003vva

3W1A | pdb_00003w1a

3W1L | pdb_00003w1l

3W1M | pdb_00003w1m

3W1N | pdb_00003w1n

3W1P | pdb_00003w1p

3W1Q | pdb_00003w1q

3W1R | pdb_00003w1r

3W1T | pdb_00003w1t

3W1U | pdb_00003w1u

3W1X | pdb_00003w1x

3W22 | pdb_00003w22

3W23 | pdb_00003w23

3W2J | pdb_00003w2j

3W2K | pdb_00003w2k

3W2L | pdb_00003w2l