RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Barabas, O."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 52 Structures.

Refinements

Structure Determination Methodology

experimental (52)

Scientific Name of Source Organism

	Mason-Pfizer monkey virus (16)
	Escherichia coli (8)
	Helicobacter pylori (6)
	Homo sapiens (6)
	Enterococcus faecalis (5)
	Deinococcus radiodurans (4)
	Clostridioides difficile (3)
	synthetic construct (3)
	Drosophila melanogaster (2)
	Helicobacter pylori 26695 (2)

More...

Taxonomy

	Bacteria (27)
	Riboviria (16)
	Eukaryota (8)
	other sequences (3)

Experimental Method

X-RAY DIFFRACTION (52)

Polymer Entity Type

	Protein (52)
	DNA (17)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (4)
	1.5 - 2.0 (24)
	2.0 - 2.5 (14)
	2.5 - 3.0 (9)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (15)
	2010 - 2014 (19)
	2015 - 2019 (12)
	2020 - 2024 (2)

Enzyme Classification Name

Hydrolases (31)

Symmetry Type

	Cyclic (46)
	Asymmetric (5)
	Dihedral (2)

SCOP Classification

	All beta proteins (28)
	Alpha and beta proteins (a+b) (9)
	Artifacts (7)
	Small proteins (1)

AllSelected

1 to 25 of 52 Structures

Page 1 of 3

Sort by

Explore in 3D

1RN8 \| pdb_00001rn8	Download File View File

Crystal structure of dUTPase complexed with substrate analogue imido-dUTP

Barabas, O., Pongracz, V., Kovari, J., Wilmanns, M., Vertessy, B.G.

(2004) J Biological Chem 279: 42907-42915

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Escherichia coli
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase (protein)
Unique Ligands	ACT, DUP, MG, TRS

Explore in 3D

1RNJ \| pdb_00001rnj	Download File View File

Crystal structure of inactive mutant dUTPase complexed with substrate analogue imido-dUTP

Barabas, O., Pongracz, V., Kovari, J., Wilmanns, M., Vertessy, B.G.

(2004) J Biological Chem 279: 42907-42915

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase (protein)
Unique Ligands	DUP, MG, TRS

Explore in 3D

1SEH \| pdb_00001seh	Download File View File

Crystal structure of E. coli dUTPase complexed with the product dUMP

Barabas, O., Kovari, J., Pongracz, V., Wilmanns, M., Vertessy, B.G.

(2004) J Biological Chem 279: 42907-42915

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Escherichia coli
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase (protein)
Unique Ligands	TRS, UMP

Explore in 3D

1SYL \| pdb_00001syl	Download File View File

Crystal structure of inactive mutant dUTPase complexed with substrate dUTP

Barabas, O., Kovari, J., Pongracz, V., Wilmanns, M., Vertessy, B.G.

(2004) J Biological Chem 279: 42907-42915

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase (protein)
Unique Ligands	DUT, MG, TRS

Explore in 3D

2D4L \| pdb_00002d4l	Download File View File

Crystal structure of truncated in C-terminal M-PMV dUTPase

Nemeth, V., Barabas, O., Vertessy, G.B.

(2007) Nucleic Acids Res 35: 495-505

Released	2006-11-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mason-Pfizer monkey virus
Macromolecule	DU (protein)

Explore in 3D

2D4M \| pdb_00002d4m	Download File View File

Crystal Structure of apo M-PMV dUTPase

Nemeth, V., Barabas, O., Vertessy, G.B.

(2007) Nucleic Acids Res 35: 495-505

Released	2006-11-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mason-Pfizer monkey virus
Macromolecule	DU (protein)

Explore in 3D

2D4N \| pdb_00002d4n	Download File View File

Crystal Structure of M-PMV dUTPase complexed with dUPNPP, substrate analogue

Nemeth, V., Barabas, O., Vertessy, G.B.

(2007) Nucleic Acids Res 35: 495-505

Released	2006-11-21
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Mason-Pfizer monkey virus
Macromolecule	DU (protein)
Unique Ligands	DUP, MG, TRS

Explore in 3D

2HQU \| pdb_00002hqu	Download File View File

Human dUTPase in complex with alpha,beta-iminodUTP and magnesium ion

Barabas, O., Varga, B., Vertessy, B.G.

(2007) FEBS Lett 581: 4783-4788

Released	2007-07-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase (protein)
Unique Ligands	CL, DUP, MG

Explore in 3D

2HR6 \| pdb_00002hr6	Download File View File

Crystal structure of dUTPase in complex with substrate analogue dUDP and manganese

Barabas, O., Kovari, J., Tapai, R., Vertessy, B.G.

(2008) Proteins 71: 308-319

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Escherichia coli
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase (protein)
Unique Ligands	DUD, EDO, MN

Explore in 3D

2HRM \| pdb_00002hrm	Download File View File

Crystal structure of dUTPase complexed with substrate analogue methylene-dUTP

Barabas, O., Kovari, J., Tapai, R., Vertessy, B.G.

(2008) Proteins 71: 308-319

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase (protein)
Unique Ligands	EDO, UC5

Explore in 3D

2PY4 \| pdb_00002py4	Download File View File

Full length structure of the Mycobacterium tuberculosis dUTPase complexed with magnesium and alpha,beta-imido-dUTP.

Barabas, O., Nagy, N., Takacs, E., Vertessy, B.G.

(2008) Biochem Biophys Res Commun 373: 8-13

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase (protein)
Unique Ligands	DUP, MG, TRS

Explore in 3D

2QY0 \| pdb_00002qy0	Download File View File

Active dimeric structure of the catalytic domain of C1r reveals enzyme-product like contacts

Kardos, J., Harmat, V., Pallo, A., Barabas, O., Szilagyi, K., Graf, L., Naray-Szabo, G., Goto, Y., Zavodszky, P., Gal, P.

(2008) Mol Immunol 45: 1752-1760

Released	2008-02-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Complement C1r subcomponent (protein)
Unique Ligands	GOL

Explore in 3D

2VHG \| pdb_00002vhg	Download File View File

Crystal Structure of the ISHp608 Transposase in Complex with Right End 31-mer DNA

Barabas, O., Ronning, D.R., Guynet, C., Hickman, A.B., Ton-Hoang, B., Chandler, M., Dyda, F.

(2008) Cell 132: 208

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Helicobacter pylori
Macromolecule	TRANSPOSASE ORFA (protein) RIGHT END 31-MER (nucleic acid)
Unique Ligands	MN

Explore in 3D

2VIC \| pdb_00002vic	Download File View File

CRYSTAL STRUCTURE OF THE ISHP608 TRANSPOSASE IN COMPLEX with Left end 26- mer DNA and manganese

Barabas, O., Ronning, D.R., Guynet, C., Hickman, A.B., Ton-Hoang, B., Chandler, M., Dyda, F.

(2008) Cell 132: 208

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Helicobacter pylori
Macromolecule	TRANSPOSASE ORFA (protein) 5'-D(APAPAPGPCPCPCPCPTPAP GPCPTPTPTPTPAPGPCPTPAPTPGPGPGPG)-3' (nucleic acid)
Unique Ligands	MN

Explore in 3D

2VIH \| pdb_00002vih	Download File View File

CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH Left END 26-MER DNA

Barabas, O., Ronning, D.R., Guynet, C., Hickman, A.B., Ton-Hoang, B., Chandler, M., Dyda, F.

(2008) Cell 132: 208

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Helicobacter pylori
Macromolecule	TRANSPOSASE ORFA (protein) 5'-D(APAPAPGPCPCPCPCPTPAP GPCPTPTPTPTPAPGPCPTPAPTPGPGPGPG)-3' (nucleic acid)

Explore in 3D

2VJU \| pdb_00002vju	Download File View File

Crystal structure of the IS608 transposase in complex with the complete Right end 35-mer DNA and manganese

Barabas, O., Ronning, D.R., Guynet, C., Hickman, A.B., Ton-Hoang, B., Chandler, M., Dyda, F.

(2008) Cell 132: 208

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Helicobacter pylori
Macromolecule	TRANSPOSASE ORFA (protein) RIGHT END 35-MER (nucleic acid)
Unique Ligands	MN

Explore in 3D

2VJV \| pdb_00002vjv	Download File View File

Crystal structure of the IS608 transposase in complex with left end 26-mer DNA hairpin and a 6-mer DNA representing the left end cleavage site

Barabas, O., Ronning, D.R., Guynet, C., Hickman, A.B., Ton-Hoang, B., Chandler, M., Dyda, F.

(2008) Cell 132: 208

Released	2008-02-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Helicobacter pylori
Macromolecule	TRANSPOSASE ORFA (protein) 5'-D(DADADADGDCDCDCDCDTDADGDCDTPDT DTDTDADGDCDTDADTDGDGDGDGP)-3' (nucleic acid) 5'-D(DTDADTDTDADCP)-3' (nucleic acid)
Unique Ligands	MG

Explore in 3D

2XM3 \| pdb_00002xm3	Download File View File

Deinococcus radiodurans ISDra2 Transposase Left end DNA complex

Hickman, A.B., James, J.A., Barabas, O., Pasternak, C., Ton-Hoang, B., Chandler, M., Sommer, S., Dyda, F.

(2010) EMBO J 29: 3840

Released	2010-10-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Deinococcus radiodurans synthetic construct
Macromolecule	TRANSPOSASE (protein) 5'-D(TPTPAPGP*T)-3' (nucleic acid) DRA2 TRANSPOSASE BINDING ELEMENT (nucleic acid)
Unique Ligands	ACT, GOL, MG

Explore in 3D

2XMA \| pdb_00002xma	Download File View File

DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE RIGHT END DNA COMPLEX

Hickman, A.B., James, J.A., Barabas, O., Pasternak, C., Ton-Hoang, B., Chandler, M., Sommer, S., Dyda, F.

(2010) EMBO J 29: 3840

Released	2010-10-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Deinococcus radiodurans
Macromolecule	TRANSPOSASE (protein) DRA2 TRANSPOSASE RIGHT END RECOGNITION SITE (nucleic acid)
Unique Ligands	MG

Explore in 3D

2XO6 \| pdb_00002xo6	Download File View File

DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE Y132F MUTANT COMPLEXED WITH LEFT END RECOGNITION AND CLEAVAGE SITE

Hickman, A.B., James, J.A., Barabas, O., Pasternak, C., Ton-Hoang, B., Chandler, M., Sommer, S., Dyda, F.

(2010) EMBO J 29: 3840

Released	2010-10-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Deinococcus radiodurans synthetic construct
Macromolecule	TRANSPOSASE (protein) 5'-D(TPTPGPAPTPG)-3' (nucleic acid) DRA2 TRANSPOSASE LEFT END RECOGNITION SEQUENCE (nucleic acid)
Unique Ligands	ACT, CD, MG

Explore in 3D

2XQC \| pdb_00002xqc	Download File View File

DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE COMPLEXED WITH LEFT END RECOGNITION AND CLEAVAGE SITE AND ZN

Hickman, A.B., James, J.A., Barabas, O., Pasternak, C., Ton-Hoang, B., Chandler, M., Sommer, S., Dyda, F.

(2010) EMBO J 29: 3840

Released	2010-10-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Deinococcus radiodurans
Macromolecule	TRANSPOSASE (protein) 5'-D(TPTPGPAPTP*GP)-3' (nucleic acid) DRA2 TRANSPOSASE LEFT END RECOGNITION SEQUENCE (nucleic acid)
Unique Ligands	ZN

Explore in 3D

3ECY \| pdb_00003ecy	Download File View File

Crystal structural analysis of Drosophila melanogaster dUTPase

Takacs, E., Barabas, O., Vertessy, B.G.

(2009) FEBS Lett 583: 865-871

Released	2008-10-07
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Drosophila melanogaster
Macromolecule	CG4584-PA, isoform A (BcDNA.LD08534) (protein)

Explore in 3D

3EHW \| pdb_00003ehw	Download File View File

Human dUTPase in complex with alpha,beta-imido-dUTP and Mg2+: visualization of the full-length C-termini in all monomers and suggestion for an additional metal ion binding site

Takacs, E., Barabas, O., Vertessy, B.G.

To be published

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	dUTP pyrophosphatase (protein)
Unique Ligands	DUP, MG

Explore in 3D

3TP1 \| pdb_00003tp1	Download File View File

Crystal Structure of the precatalytic M-PMV dUTPase - substrate (dUPNPP) complex

Barabas, O., Nemeth, V., Vertessy, B.G.

To be published

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mason-Pfizer monkey virus
Macromolecule	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE (protein)
Unique Ligands	DUP, MG

Explore in 3D

3TPN \| pdb_00003tpn	Download File View File

Crystal structure of M-PMV dUTPASE complexed with dUPNPP, substrate

Nemeth, V., Barabas, O., Vertessy, G.B.

To be published

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mason-Pfizer monkey virus
Macromolecule	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE (protein)
Unique Ligands	DTT, DUP, MG, TRS

1 to 25 of 52 Structures

Page 1 of 3

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1RN8 | pdb_00001rn8

1RNJ | pdb_00001rnj

1SEH | pdb_00001seh

1SYL | pdb_00001syl

2D4L | pdb_00002d4l

2D4M | pdb_00002d4m

2D4N | pdb_00002d4n

2HQU | pdb_00002hqu

2HR6 | pdb_00002hr6

2HRM | pdb_00002hrm

2PY4 | pdb_00002py4

2QY0 | pdb_00002qy0

2VHG | pdb_00002vhg

2VIC | pdb_00002vic

2VIH | pdb_00002vih

2VJU | pdb_00002vju

2VJV | pdb_00002vjv

2XM3 | pdb_00002xm3

2XMA | pdb_00002xma

2XO6 | pdb_00002xo6

2XQC | pdb_00002xqc

3ECY | pdb_00003ecy

3EHW | pdb_00003ehw

3TP1 | pdb_00003tp1

3TPN | pdb_00003tpn