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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Chen, D.-H."

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Search Summary

This query matches 382 Structures.

Refinements

Structure Determination Methodology

experimental (382)

Scientific Name of Source Organism

	Homo sapiens (174)
	Escherichia coli (26)
	Sus scrofa (12)
	Mus musculus (11)
	Pseudonocardia thermophila (11)
	synthetic construct (11)
	Human immunodeficiency virus 1 (10)
	Coxsackievirus A16 (9)
	Rattus norvegicus (9)
	Bacillus subtilis (6)

More...

Taxonomy

	Eukaryota (229)
	Bacteria (117)
	Riboviria (39)
	other sequences (11)
	Duplodnaviria (6)
	Archaea (2)
	Varidnaviria (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (291)
	ELECTRON MICROSCOPY (67)
	SOLUTION NMR (24)

Polymer Entity Type

	Protein (375)
	RNA (11)
	DNA (2)
	NA-hybrid (2)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (47)
	1.5 - 2.0 (105)
	2.0 - 2.5 (82)
	2.5 - 3.0 (56)
	3.0 - 3.5 (39)
	3.5 - 4.0 (15)
	4.0 - 4.5 (5)
	> 4.5 (7)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (20)
	2005 - 2009 (31)
	2010 - 2014 (32)
	2015 - 2019 (137)
	2020 - 2024 (150)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (99)
	Transferases (98)
	Lyases (33)
	Oxidoreductases (23)
	Ligases (12)
	Isomerases (7)

Membrane Protein Annotation

	mpstruc (22)
	PDBTM (22)
	OPM (20)
	MemProtMD (7)

Symmetry Type

	Asymmetric (208)
	Cyclic (129)
	Dihedral (21)
	Icosahedral (19)
	Tetrahedral (6)
	Helical (1)

SCOP Classification

	All alpha proteins (56)
	Alpha and beta proteins (a/b) (70)
	All beta proteins (38)
	Alpha and beta proteins (a+b) (45)
	Artifacts (33)
	Coiled coil proteins (4)
	Small proteins (4)
	Multi-domain proteins (alpha and beta) (1)
	Membrane and cell surface proteins and peptides (1)
	Peptides (1)

AllSelected

1 to 25 of 382 Structures

Page 1 of 16

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1A4O \| pdb_00001a4o	Download File View File

14-3-3 PROTEIN ZETA ISOFORM

Liu, D., Bienkowska, J., Petosa, C., Collier, R.J., Fu, H., Liddington, R.C.

(1995) Nature 376: 191-194

Released	1999-03-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus
Macromolecule	14-3-3 PROTEIN ZETA (protein)

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1BNO \| pdb_00001bno	Download File View File

NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA, MINIMIZED AVERAGE STRUCTURE

Liu, D.-J., Prasad, R., Wilson, S.H., Derose, E.F., Mullen, G.P.

(1996) Biochemistry 35: 6188-6200

Released	1996-12-07
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein)

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1BNP \| pdb_00001bnp	Download File View File

NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA, 55 STRUCTURES

Liu, D.-J., Prasad, R., Wilson, S.H., Derose, E.F., Mullen, G.P.

(1996) Biochemistry 35: 6188-6200

Released	1996-12-07
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein)

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1BXD \| pdb_00001bxd	Download File View File

NMR STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF THE E. COLI OSMOSENSOR ENVZ

Tanaka, T., Saha, S.K., Tomomori, C., Ishima, R., Liu, D., Tong, K.I., Park, H., Dutta, R., Qin, L., Swindells, M.B., Yamazaki, T., Ono, A.M., Kainosho, M., Inouye, M., Ikura, M.

(1998) Nature 396: 88-92

Released	1999-10-02
Method	SOLUTION NMR
Organisms	Escherichia coli BL21(DE3)
Macromolecule	PROTEIN (OSMOLARITY SENSOR PROTEIN (ENVZ)) (protein)
Unique Ligands	ANP

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1DK2 \| pdb_00001dk2	Download File View File

REFINED SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA

Maciejewski, M.W., Prasad, R., Liu, D.-J., Wilson, S.H., Mullen, G.P.

(2000) J Mol Biology 296: 229-253

Released	2000-02-14
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein)

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1DK3 \| pdb_00001dk3	Download File View File

REFINED SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA

Maciejewski, M.W., Prasad, R., Liu, D.-J., Wilson, S.H., Mullen, G.P.

(2000) J Mol Biology 296: 229-253

Released	2000-02-14
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein)

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1F30 \| pdb_00001f30	Download File View File

THE STRUCTURAL BASIS FOR DNA PROTECTION BY E. COLI DPS PROTEIN

Luo, J., Liu, D., White, M.A., Fox, R.O.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli
Macromolecule	DNA PROTECTION DURING STARVATION PROTEIN (protein)
Unique Ligands	TRS, ZN

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1F33 \| pdb_00001f33	Download File View File

THE STRUCTURAL BASIS FOR DNA PROTECTION BY E. COLI DPS PROTEIN

Luo, J., Liu, D., White, M.A., Fox, R.O.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	DNA PROTECTION DURING STARVATION PROTEIN (protein)
Unique Ligands	TRS

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1I5Z \| pdb_00001i5z	Download File View File

STRUCTURE OF CRP-CAMP AT 1.9 A

White, M.A., Lee, J.C., Fox, R.O.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein)
Unique Ligands	CMP, TRS

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1I6X \| pdb_00001i6x	Download File View File

STRUCTURE OF A STAR MUTANT CRP-CAMP AT 2.2 A

White, M.A., Lee, J.C., Fox, R.O.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein)
Unique Ligands	CMP, TRS

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1JOY \| pdb_00001joy	Download File View File

SOLUTION STRUCTURE OF THE HOMODIMERIC DOMAIN OF ENVZ FROM ESCHERICHIA COLI BY MULTI-DIMENSIONAL NMR.

Tomomori, C., Tanaka, T., Dutta, R., Park, H., Saha, S.K., Zhu, Y., Ishima, R., Liu, D., Tong, K.I., Kurokawa, H., Qian, H., Inouye, M., Ikura, M.

(1999) Nat Struct Biol 6: 729-734

Released	2000-01-12
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	PROTEIN (ENVZ_ECOLI) (protein)

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1JR6 \| pdb_00001jr6	Download File View File

Solution Structure of an Engineered Arginine-rich Subdomain 2 of the Hepatitis C Virus NS3 RNA Helicase

Liu, D., Wyss, D.F., Wang, Y.S., Gesell, J.J.

(2001) J Mol Biology 314: 543-561

Released	2002-08-10
Method	SOLUTION NMR
Organisms	Hepacivirus hominis
Macromolecule	Helicase NS3 (protein)

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1JRE \| pdb_00001jre	Download File View File

DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN

Luo, J., Liu, D., White, M.A., Fox, R.O.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli
Macromolecule	DNA PROTECTION DURING STARVATION PROTEIN (protein)
Unique Ligands	CD, TRS

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1JTS \| pdb_00001jts	Download File View File

DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN

Luo, J., Liu, D., White, M.A., Fox, R.O.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	DNA PROTECTION DURING STARVATION PROTEIN (protein)
Unique Ligands	TRS

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1L8H \| pdb_00001l8h	Download File View File

DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN

Luo, J., Liu, D., White, M.A., Fox, R.O.

To be published

Released	2003-06-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	DNA PROTECTION DURING STARVATION PROTEIN (protein)
Unique Ligands	K, TRS

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1L8I \| pdb_00001l8i	Download File View File

Dna Protection and Binding by E. Coli DPS Protein

Luo, J., Liu, D., White, M.A., Fox, R.O.

To be published

Released	2003-06-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	DNA PROTECTION DURING STARVATION PROTEIN (protein)
Unique Ligands	K, TRS

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1ONB \| pdb_00001onb	Download File View File

Solution structure of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA helicase

Liu, D., Wang, Y.S., Gesell, J.J., Wyss, D.F.

(2001) J Mol Biology 314: 543-561

Released	2003-03-11
Method	SOLUTION NMR
Organisms	Hepacivirus hominis
Macromolecule	helicase NS3 (protein)

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1ONS \| pdb_00001ons	Download File View File

Crystal structure of Escherichia coli heat shock protein YedU

Zhao, Y., Fox, R.O.

(2003) Protein Sci 12: 2303-2311

Released	2004-01-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Chaperone protein hchA (protein)
Unique Ligands	ZN

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1OVQ \| pdb_00001ovq	Download File View File

Solution structure of the hypothetical protein YqgF from Escherichia coli

Liu, D., Wang, Y.S., Wyss, D.F.

(2003) J Biomol NMR 27: 389-392

Released	2003-11-04
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Hypothetical protein yqgF (protein)

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1PXZ \| pdb_00001pxz	Download File View File

1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen

Czerwinski, E.W., White, M.A., Midoro-Horiuti, T., Brooks, E.G., Goldblum, R.M.

(2005) J Biological Chem 280: 3740-3746

Released	2004-11-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Juniperus ashei
Macromolecule	Major pollen allergen Jun a 1 (protein)

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1R8T \| pdb_00001r8t	Download File View File

Solution structures of high affinity miniprotein ligands to Streptavidin

Luo, J., Mukherjee, M., Fan, X., Yang, H., Liu, D., Khan, R., White, M., Fox, R.O.

To be published

Released	2005-02-15
Method	SOLUTION NMR
Macromolecule	MP1 (protein)

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1RKN \| pdb_00001rkn	Download File View File

Solution structure of 1-110 fragment of Staphylococcal Nuclease with G88W mutation

Liu, D.S., Feng, Y.G., Ye, K.Q., Shan, L., Wang, J.F.

(2007) Biophys J 92: 2090-2107

Released	2004-12-07
Method	SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	Thermonuclease (protein)

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1RQ8 \| pdb_00001rq8	Download File View File

Solution structure of the hypothetical protein SAV1595 from Staphylococcus aureus, a putative RNA binding protein

Liu, D., Wyss, D.F.

(2004) J Biomol NMR 29: 391-394

Released	2004-07-06
Method	SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	conserved hypothetical protein (protein)

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1TBA \| pdb_00001tba	Download File View File

SOLUTION STRUCTURE OF A TBP-TAFII230 COMPLEX: PROTEIN MIMICRY OF THE MINOR GROOVE SURFACE OF THE TATA BOX UNWOUND BY TBP, NMR, 25 STRUCTURES

Liu, D., Ishima, R., Tong, K.I., Bagby, S., Kokubo, T., Muhandiram, D.R., Kay, L.E., Nakatani, Y., Ikura, M.

(1998) Cell 94: 573-583

Released	1999-08-16
Method	SOLUTION NMR
Organisms	Drosophila melanogaster Saccharomyces cerevisiae
Macromolecule	TRANSCRIPTION INITIATION FACTOR IID 230K CHAIN (protein) TRANSCRIPTION INITIATION FACTOR TFIID (protein)