RCSB PDB: Search

1ZUO \| pdb_00001zuo	Download File View File

Structure of Human Ubiquitin-Conjugating Enzyme (UBCi) Involved in Embryo Attachment and Implantation

Walker, J.R., Avvakumov, G.V., Cui, H., Newman, E.M., Mackenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Hypothetical protein LOC92912 (protein)
Unique Ligands	BME

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2Z5D \| pdb_00002z5d	Download File View File

Human ubiquitin-conjugating enzyme E2 H

Bochkarev, A., Cui, H., Walker, J.R., Newman, E.M., Mackenzie, F., Battaile, K.P., Sundstrom, M., Arrowsmith, C., Edwards, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2007-10-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 H (protein)
Unique Ligands	NA

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3CNV \| pdb_00003cnv	Download File View File

Crystal structure of the ligand-binding domain of a putative GntR-family transcriptional regulator from Bordetella bronchiseptica

Zimmerman, M.D., Xu, X., Cui, H., Filippova, E.V., Savchenko, A., Edwards, A.M., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Putative GntR-family transcriptional regulator (protein)
Unique Ligands	CL, FLC

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3CQV \| pdb_00003cqv	Download File View File

Crystal structure of Reverb beta in complex with heme

Xu, X., Dong, A., Pardee, K.I., Reinking, J., Krause, H., Schuetz, A., Zhang, R., Cui, H., Edwards, A., Arrowsmith, C.H., Weigelt, J., Bountra, C., Savchenko, A., Botchkarev, A., Structural Genomics Consortium (SGC)

(2009) PLoS Biol 7: e43-e43

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 1 group D member 2 (protein)
Unique Ligands	HEM

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3DED \| pdb_00003ded	Download File View File

C-terminal domain of Probable hemolysin from Chromobacterium violaceum

Chang, C., Xu, X., Cui, H., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-08-05
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Chromobacterium violaceum
Macromolecule	Probable hemolysin (protein)
Unique Ligands	CA

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3E6Q \| pdb_00003e6q	Download File View File

Putative 5-carboxymethyl-2-hydroxymuconate isomerase from Pseudomonas aeruginosa.

Osipiuk, J., Xu, X., Cui, H., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-08-26
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	putative 5-carboxymethyl-2-hydroxymuconate isomerase (protein)
Unique Ligands	ACT, EDO, FMT, GOL, IMD, NA

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3E9Q \| pdb_00003e9q	Download File View File

Crystal Structure of the Short Chain Dehydrogenase from Shigella flexneri

Kim, Y., Xu, X., Cui, H., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Shigella flexneri 2a str. 301
Macromolecule	Short-chain dehydrogenase (protein)
Unique Ligands	EDO, GOL, SO4, ZN

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3EC6 \| pdb_00003ec6	Download File View File

Crystal structure of the General Stress Protein 26 from Bacillus anthracis str. Sterne

Kim, Y., Xu, X., Cui, H., Savchenko, A., Edwards, A., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2008-09-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus anthracis
Macromolecule	General stress protein 26 (protein)
Unique Ligands	FAD, SO4

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3EFE \| pdb_00003efe	Download File View File

The crystal structure of the thiJ/pfpI family protein from Bacillus anthracis

Zhang, R., Xu, X., Cui, H., Savchenko, A., Edwards, A., Anderson, W., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus anthracis
Macromolecule	ThiJ/pfpI family protein (protein)
Unique Ligands	SO4

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3EFG \| pdb_00003efg	Download File View File

Structure of SlyX protein from Xanthomonas campestris pv. campestris str. ATCC 33913

Cuff, M.E., Xu, X., Cui, H., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-12-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Xanthomonas campestris pv. campestris
Macromolecule	Protein slyX homolog (protein)
Unique Ligands	EDO

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3EY7 \| pdb_00003ey7	Download File View File

Structure from the mobile metagenome of V. Cholerae. Integron cassette protein VCH_CASS1

Harrop, S.J., Deshpande, C.N., Sureshan, V., Boucher, Y., Xu, X., Cui, H., Chang, C., Edwards, A., Joachimiak, A., Savchenko, A., Curmi, P.M.G., Mabbutt, B.C., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Vibrio cholerae
Macromolecule	Biphenyl-2,3-diol 1,2-dioxygenase III-related protein (protein)
Unique Ligands	CA

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3EY8 \| pdb_00003ey8	Download File View File

Structure from the mobile metagenome of V. Pseudocholerae. VPC_CASS1

Harrop, S.J., Deshpande, C.N., Sureshan, V., Boucher, Y., Xu, X., Cui, H., Chang, C., Edwards, A., Joachimiak, A., Savchenko, A., Curmi, P.M.G., Mabbutt, B.C., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Vibrio cholerae
Macromolecule	Biphenyl-2,3-diol 1,2-dioxygenase III-related protein (protein)
Unique Ligands	SO4

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3F3K \| pdb_00003f3k	Download File View File

The structure of uncharacterized protein YKR043C from Saccharomyces cerevisiae.

Cuff, M., Xu, X., Cui, H., Edwards, A., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2010) J Biological Chem 285: 21049-21059

Released	2008-12-09
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Uncharacterized protein YKR043C (protein)
Unique Ligands	GOL

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3F4A \| pdb_00003f4a	Download File View File

Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family

Singer, A.U., Xu, X., Cui, H., Osipiuk, J., Joachimiak, A., Edwards, A.M., Yakunin, A.F., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Uncharacterized protein YGR203W (protein)
Unique Ligands	CL, NH4, SO4

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3F5R \| pdb_00003f5r	Download File View File

The crystal structure of a subunit of the heterodimeric FACT complex (Spt16p-Pob3p).

Tan, K., Xu, X., Cui, H., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-11-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	FACT complex subunit POB3 (protein)
Unique Ligands	CL, FMT, GOL

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3FBU \| pdb_00003fbu	Download File View File

The crystal structure of the acetyltransferase (GNAT family) from Bacillus anthracis

Zhang, R., Xu, X., Cui, H., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus anthracis str. Sterne
Macromolecule	Acetyltransferase, GNAT family (protein)
Unique Ligands	COA

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3FG8 \| pdb_00003fg8	Download File View File

Crystal structure of PAS domain of RHA05790

Chang, C., Xu, X., Cui, H., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-01-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	uncharacterized protein RHA05790 (protein)
Unique Ligands	3PB

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3FHM \| pdb_00003fhm	Download File View File

Crystal structure of the CBS-domain containing protein ATU1752 from Agrobacterium tumefaciens

Singer, A.U., Xu, X., Zhang, R., Cui, H., Kudritsdka, M., Edwards, A.M., Joachimiak, A., Yakunin, A.F., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-01-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	uncharacterized protein ATU1752 (protein)
Unique Ligands	AMP, NAI, SO4

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3FTT \| pdb_00003ftt	Download File View File

Crystal Structure of the galactoside O-acetyltransferase from Staphylococcus aureus

Knapik, A.A., Shumilin, I.A., Cui, H., Xu, X., Chruszcz, M., Zimmerman, M.D., Cymborowski, M., Anderson, W.F., Savchenko, A., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

(2013) J Struct Funct Genomics 14: 97-108

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Staphylococcus aureus subsp. aureus COL
Macromolecule	Putative acetyltransferase SACOL2570 (protein)

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3FY6 \| pdb_00003fy6	Download File View File

Structure from the mobile metagenome of V. Cholerae. Integron cassette protein VCH_CASS3

Deshpande, C.N., Sureshan, V., Harrop, S.J., Boucher, Y., Xu, X., Cui, H., Edwards, A., Savchenko, A., Joachimiak, A., Tan, K., Stokes, H.W., Curmi, P.M.G., Mabbutt, B.C., Midwest Center for Structural Genomics (MCSG)

(2013) PLoS One 8: e52934-e52934

Released	2009-02-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vibrio cholerae
Macromolecule	Integron cassette protein (protein)

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3G1J \| pdb_00003g1j	Download File View File

Structure from the mobile metagenome of Vibrio cholerae. Integron cassette protein VCH_CASS4.

Deshpande, C.N., Sureshan, V., Harrop, S.J., Boucher, Y., Xu, X., Cui, H., Edwards, A., Savchenko, A., Joachimiak, A., Tan, K., Stokes, H.W., Curmi, P.M.G., Mabbutt, B.C., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-02-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Vibrio cholerae
Macromolecule	Integron cassette protein (protein)

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3G64 \| pdb_00003g64	Download File View File

Crystal structure of putative enoyl-CoA hydratase from Streptomyces coelicolor A3(2)

Kim, Y., Xu, X., Cui, H., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-03-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Putative enoyl-CoA hydratase (protein)
Unique Ligands	EDO, GOL, SO4, ZN

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3GEM \| pdb_00003gem	Download File View File

Crystal structure of short-chain dehydrogenase from Pseudomonas syringae

Osipiuk, J., Xu, X., Cui, H., Nocek, B., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-03-10
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Pseudomonas savastanoi pv. phaseolicola 1448A
Macromolecule	Short chain dehydrogenase (protein)
Unique Ligands	ACT

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3GK6 \| pdb_00003gk6	Download File View File

Crystal structure from the mobile metagenome of Vibrio cholerae. Integron cassette protein VCH_CASS2.

Deshpande, C.N., Sureshan, V., Harrop, S.J., Boucher, Y., Xu, X., Cui, H., Edwards, A.M., Savchenko, A., Joachimiak, A., Chang, C., Stokes, H.W., Curmi, P.M.G., Mabbutt, B.C., Midwest Center for Structural Genomics (MCSG)

(2011) PLoS One 6: e16934-e16934

Released	2009-03-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vibrio cholerae
Macromolecule	Integron cassette protein VCH_CASS2 (protein)
Unique Ligands	PE4

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3GL5 \| pdb_00003gl5	Download File View File

Crystal structure of probable DsbA oxidoreductase SCO1869 from Streptomyces coelicolor

Chang, C., Xu, X., Cui, H., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Putative DsbA oxidoreductase SCO1869 (protein)
Unique Ligands	ACT, NA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ZUO | pdb_00001zuo

2Z5D | pdb_00002z5d

3CNV | pdb_00003cnv

3CQV | pdb_00003cqv

3DED | pdb_00003ded

3E6Q | pdb_00003e6q

3E9Q | pdb_00003e9q

3EC6 | pdb_00003ec6

3EFE | pdb_00003efe

3EFG | pdb_00003efg

3EY7 | pdb_00003ey7

3EY8 | pdb_00003ey8

3F3K | pdb_00003f3k

3F4A | pdb_00003f4a

3F5R | pdb_00003f5r

3FBU | pdb_00003fbu

3FG8 | pdb_00003fg8

3FHM | pdb_00003fhm

3FTT | pdb_00003ftt

3FY6 | pdb_00003fy6

3G1J | pdb_00003g1j

3G64 | pdb_00003g64

3GEM | pdb_00003gem

3GK6 | pdb_00003gk6

3GL5 | pdb_00003gl5