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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gao, N."

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Search Summary

This query matches 154 Structures.

Refinements

Structure Determination Methodology

experimental (154)

Scientific Name of Source Organism

	Homo sapiens (47)
	Escherichia coli K-12 (21)
	Escherichia coli (15)
	Saccharomyces cerevisiae S288C (15)
	Xenopus laevis (14)
	Bacillus subtilis subsp. subtilis str. 168 (12)
	Saccharomyces cerevisiae (11)
	Mus musculus (9)
	Geobacillus thermodenitrificans NG80-2 (7)
	synthetic construct (7)

More...

Taxonomy

	Eukaryota (96)
	Bacteria (64)
	other sequences (7)
	Varidnaviria (4)
	Archaea (1)

Experimental Method

	ELECTRON MICROSCOPY (144)
	X-RAY DIFFRACTION (10)

Polymer Entity Type

	Protein (144)
	RNA (52)
	DNA (29)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (4)
	2.5 - 3.0 (16)
	3.0 - 3.5 (50)
	3.5 - 4.0 (33)
	4.0 - 4.5 (4)
	> 4.5 (42)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (28)
	2015 - 2019 (40)
	2020 - 2024 (77)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (51)
	Transferases (13)
	Lyases (8)
	Oxidoreductases (4)
	Translocases (6)
	Ligases (2)

Membrane Protein Annotation

	PDBTM (21)
	MemProtMD (16)
	OPM (6)
	mpstruc (8)

Symmetry Type

	Asymmetric (101)
	Cyclic (39)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	All beta proteins (3)
	Alpha and beta proteins (a/b) (2)
	All alpha proteins (3)
	Membrane and cell surface proteins and peptides (1)
	Low resolution protein structures (1)
	Small proteins (1)

AllSelected

1 to 25 of 154 Structures

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1ZN0 \| pdb_00001zn0	Download File View File

Coordinates of RRF and EF-G fitted into Cryo-EM map of the 50S subunit bound with both EF-G (GDPNP) and RRF

Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.

(2005) Mol Cell 18: 663-674

Released	2005-06-14
Method	ELECTRON MICROSCOPY 15.5 Å
Organisms	Escherichia coli
Macromolecule	ELONGATION FACTOR G (protein) Ribosome recycling factor (protein) 16S RIBOSOMAL RNA (nucleic acid)

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1ZN1 \| pdb_00001zn1	Download File View File

Coordinates of RRF fitted into Cryo-EM map of the 70S post-termination complex

Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.

(2005) Mol Cell 18: 663-674

Released	2005-06-14
Method	ELECTRON MICROSCOPY 14.1 Å
Organisms	Escherichia coli
Macromolecule	30S ribosomal protein S12 (protein) Ribosome recycling factor (protein) ribosomal 16S RNA (nucleic acid) ribosomal 23S RNA (nucleic acid)

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2RDO \| pdb_00002rdo	Download File View File

50S subunit with EF-G(GDPNP) and RRF bound

Gao, N., Zavialov, A.V., Ehrenberg, M., Frank, J.

(2007) J Mol Biology 374: 1345-1358

Released	2008-03-04
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 32 Unique nucleic acid chains: 2

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2YKR \| pdb_00002ykr	Download File View File

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Guo, Q., Yuan, Y., Xu, Y., Feng, B., Liu, L., Chen, K., Lei, J., Gao, N.

(2011) Proc Natl Acad Sci U S A 108: 13100

Released	2011-08-24
Method	ELECTRON MICROSCOPY 9.8 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	Unique protein chains: 21 Unique nucleic acid chains: 1

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3J28 \| pdb_00003j28	Download File View File

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 2609-2620

Released	2013-01-16
Method	ELECTRON MICROSCOPY 12.9 Å
Organisms	Escherichia coli K-12
Macromolecule	16S rRNA (nucleic acid)

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3J29 \| pdb_00003j29	Download File View File

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 2609-2620

Released	2013-01-16
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Escherichia coli K-12
Macromolecule	16S rRNA (nucleic acid)

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3J2A \| pdb_00003j2a	Download File View File

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 2609-2620

Released	2013-01-16
Method	ELECTRON MICROSCOPY 13.1 Å
Organisms	Escherichia coli K-12
Macromolecule	16S rRNA (nucleic acid)

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3J2B \| pdb_00003j2b	Download File View File

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 2609-2620

Released	2013-01-16
Method	ELECTRON MICROSCOPY 13.6 Å
Organisms	Escherichia coli K-12
Macromolecule	16S rRNA (nucleic acid)

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3J2C \| pdb_00003j2c	Download File View File

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 2609-2620

Released	2013-01-16
Method	ELECTRON MICROSCOPY 13.2 Å
Organisms	Escherichia coli
Macromolecule	16S rRNA body domain (nucleic acid) 16S rRNA head domain (nucleic acid)

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3J2D \| pdb_00003j2d	Download File View File

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 2609-2620

Released	2013-01-16
Method	ELECTRON MICROSCOPY 18.7 Å
Organisms	Escherichia coli
Macromolecule	16S rRNA (nucleic acid)

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3J2E \| pdb_00003j2e	Download File View File

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 2609-2620

Released	2013-01-16
Method	ELECTRON MICROSCOPY 15.3 Å
Organisms	Escherichia coli
Macromolecule	16S rRNA (nucleic acid)

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3J2F \| pdb_00003j2f	Download File View File

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 2609-2620

Released	2013-01-16
Method	ELECTRON MICROSCOPY 17.6 Å
Organisms	Escherichia coli
Macromolecule	16S rRNA (nucleic acid)

Explore in 3D

3J2G \| pdb_00003j2g	Download File View File

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 2609-2620

Released	2013-01-16
Method	ELECTRON MICROSCOPY 16.5 Å
Organisms	Escherichia coli
Macromolecule	16S rRNA (nucleic acid)

Explore in 3D

3J2H \| pdb_00003j2h	Download File View File

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 2609-2620

Released	2013-01-16
Method	ELECTRON MICROSCOPY 18.8 Å
Organisms	Escherichia coli
Macromolecule	16S rRNA (nucleic acid)

Explore in 3D

3J3R \| pdb_00003j3r	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 9.4 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3S \| pdb_00003j3s	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 11 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3T \| pdb_00003j3t	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3U \| pdb_00003j3u	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 10 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3V \| pdb_00003j3v	Download File View File

Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)

Li, N., Guo, Q., Zhang, Y., Yuan, Y., Ma, C., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 7073-7083

Released	2013-06-12
Method	ELECTRON MICROSCOPY 13.3 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Unique protein chains: 22 Unique nucleic acid chains: 2

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3J3W \| pdb_00003j3w	Download File View File

Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a)

Li, N., Guo, Q., Zhang, Y., Yuan, Y., Ma, C., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 7073-7083

Released	2013-06-12
Method	ELECTRON MICROSCOPY 10.7 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Unique protein chains: 19 Unique nucleic acid chains: 1

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3J8G \| pdb_00003j8g	Download File View File

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Zhang, X., Yan, K., Zhang, Y., Li, N., Ma, C., Li, Z., Zhang, Y., Feng, B., Liu, J., Sun, Y., Xu, Y., Lei, J., Gao, N.

(2014) Nucleic Acids Res

Released	2014-11-26
Method	ELECTRON MICROSCOPY 5 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2

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3JA8 \| pdb_00003ja8	Download File View File

Cryo-EM structure of the MCM2-7 double hexamer

Li, N., Zhai, Y., Zhang, Y., Li, W., Yang, M., Lei, J., Tye, B.K., Gao, N.

(2015) Nature 524: 186-191

Released	2015-08-05
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 6
Unique Ligands	ADP

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3JAC \| pdb_00003jac	Download File View File

Cryo-EM study of a channel

Ge, J., Li, W., Zhao, Q., Li, N., Xiao, B., Gao, N., Yang, M.

(2015) Nature 527: 64-69

Released	2015-09-23
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Mus musculus
Macromolecule	Piezo-type mechanosensitive ion channel component 1 (protein)

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3JBU \| pdb_00003jbu	Download File View File

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Zhang, J., Pan, X.J., Yan, K.G., Sun, S., Gao, N., Sui, S.F.

(2015) Elife 4:

Released	2016-01-27
Method	ELECTRON MICROSCOPY 3.64 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5

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3JBV \| pdb_00003jbv	Download File View File

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Zhang, J., Pan, X.J., Yan, K.G., Sun, S., Gao, N., Sui, S.F.

(2015) Elife 4:

Released	2016-01-27
Method	ELECTRON MICROSCOPY 3.32 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	CLM

1 to 25 of 154 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ZN0 | pdb_00001zn0

1ZN1 | pdb_00001zn1

2RDO | pdb_00002rdo

2YKR | pdb_00002ykr

3J28 | pdb_00003j28

3J29 | pdb_00003j29

3J2A | pdb_00003j2a

3J2B | pdb_00003j2b

3J2C | pdb_00003j2c

3J2D | pdb_00003j2d

3J2E | pdb_00003j2e

3J2F | pdb_00003j2f

3J2G | pdb_00003j2g

3J2H | pdb_00003j2h

3J3R | pdb_00003j3r

3J3S | pdb_00003j3s

3J3T | pdb_00003j3t

3J3U | pdb_00003j3u

3J3V | pdb_00003j3v

3J3W | pdb_00003j3w

3J8G | pdb_00003j8g

3JA8 | pdb_00003ja8

3JAC | pdb_00003jac

3JBU | pdb_00003jbu

3JBV | pdb_00003jbv