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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gottipati, K."

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Mus musculus (7)
	Lederbergvirus P22 (5)
	Severe acute respiratory syndrome coronavirus 2 (3)
	Borreliella burgdorferi (2)
	Equus caballus (2)
	Thaumatococcus daniellii (2)
	Vicugna pacos (2)
	Aequorea victoria (1)
	Escherichia coli K-12 (1)
	Homo sapiens (1)

More...

Taxonomy

	Eukaryota (16)
	Duplodnaviria (5)
	Bacteria (3)
	Riboviria (3)

Experimental Method

X-RAY DIFFRACTION (22)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (13)
	2.0 - 2.5 (4)
	2.5 - 3.0 (3)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (6)
	2010 - 2014 (4)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (5)
	Oxidoreductases (2)

Symmetry Type

	Asymmetric (11)
	Cyclic (11)

SCOP Classification

	All beta proteins (16)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (1)
	Artifacts (1)

AllSelected

1 to 22 of 22 Structures

Page 1 of 1

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1P4P \| pdb_00001p4p	Download File View File

Outer Surface Protein B of B. burgdorferi: crystal structure of the C-terminal fragment

Becker, M., Bunikis, J., Lade, B.D., Dunn, J.J., Barbour, A.G., Lawson, C.L.

(2005) J Biological Chem 280: 17363-17370

Released	2004-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Borreliella burgdorferi
Macromolecule	Outer surface protein B (protein)

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1RJL \| pdb_00001rjl	Download File View File

Structure of the complex between OspB-CT and bactericidal Fab-H6831

Becker, M., Bunikis, J., Lade, B.D., Dunn, J.J., Barbour, A.G., Lawson, C.L.

(2005) J Biological Chem 280: 17363-17370

Released	2004-11-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Borreliella burgdorferi Mus musculus
Macromolecule	Fab H6831 H-chain (protein) Fab H6831 L-chain (protein) Outer surface protein B (protein)

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1U36 \| pdb_00001u36	Download File View File

Crystal structure of WLAC mutant of dimerisation domain of NF-kB p50 transcription factor

Chirgadze, D.Y., Demydchuk, M., Becker, M., Moran, S., Paoli, M.

(2004) Structure 12: 1489-1494

Released	2004-08-17
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Mus musculus
Macromolecule	Nuclear factor NF-kappa-B p105 subunit (protein)

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1U3J \| pdb_00001u3j	Download File View File

Crystal structure of MLAV mutant of dimerisation domain of NF-kB p50 transcription factor

Chirgadze, D.Y., Demydchuk, M., Becker, M., Moran, S., Paoli, M.

(2004) Structure 12: 1489-1494

Released	2004-08-17
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Mus musculus
Macromolecule	Nuclear factor NF-kappa-B p105 subunit (protein)

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1U3Y \| pdb_00001u3y	Download File View File

Crystal structure of ILAC mutant of dimerisation domain of NF-kB p50 transcription factor

Chirgadze, D.Y., Demydchuk, M., Becker, M., Moran, S., Paoli, M.

(2004) Structure 12: 1489-1494

Released	2004-08-17
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Mus musculus
Macromolecule	Nuclear factor NF-kappa-B p105 subunit (protein)

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1U3Z \| pdb_00001u3z	Download File View File

Crystal structure of MLAC mutant of dimerisation domain of NF-kB p50 transcription factor

Chirgadze, D.Y., Demydchuk, M., Becker, M., Moran, S., Paoli, M.

(2004) Structure 12: 1489-1494

Released	2004-08-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	Nuclear factor NF-kappa-B p105 subunit (protein)

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1U41 \| pdb_00001u41	Download File View File

Crystal structure of YLGV mutant of dimerisation domain of NF-kB p50 transcription factor

Chirgadze, D.Y., Demydchuk, M., Becker, M., Moran, S., Paoli, M.

(2004) Structure 12: 1489-1494

Released	2004-08-17
Method	X-RAY DIFFRACTION 2.202 Å
Organisms	Mus musculus
Macromolecule	Nuclear factor NF-kappa-B p105 subunit (protein)

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1U42 \| pdb_00001u42	Download File View File

Crystal structure of MLAM mutant of dimerisation domain of NF-kB p50 transcription factor

Chirgadze, D.Y., Demydchuk, M., Becker, M., Moran, S., Paoli, M.

(2004) Structure 12: 1489-1494

Released	2004-08-17
Method	X-RAY DIFFRACTION 2.699 Å
Organisms	Mus musculus
Macromolecule	Nuclear factor NF-kappa-B p105 subunit (protein)

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1Z40 \| pdb_00001z40	Download File View File

AMA1 from Plasmodium falciparum

Bai, T., Becker, M., Gupta, A., Strike, P., Murphy, V.J., Anders, R.F., Batchelor, A.H.

(2005) Proc Natl Acad Sci U S A 102: 12736-12741

Released	2005-08-16
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	apical membrane antigen 1 precursor (protein)
Unique Ligands	CL

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2VFM \| pdb_00002vfm	Download File View File

Low Temperature Structure of P22 Tailspike Protein Fragment (109-666)

Becker, M., Mueller, J.J., Heinemann, U., Seckler, R.

To be published

Released	2008-12-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lederbergvirus P22
Macromolecule	BIFUNCTIONAL TAIL PROTEIN (protein)
Unique Ligands	CA, GOL, SO4

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2VFN \| pdb_00002vfn	Download File View File

Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V125A

Becker, M., Mueller, J.J., Heinemann, U., Seckler, R.

To be published

Released	2008-12-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lederbergvirus P22
Macromolecule	BIFUNCTIONAL TAIL PROTEIN (protein)
Unique Ligands	CA, GOL, SO4

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2VFO \| pdb_00002vfo	Download File View File

Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V125L

Becker, M., Mueller, J.J., Heinemann, U., Seckler, R.

To be published

Released	2008-12-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lederbergvirus P22
Macromolecule	P22 TAILSPIKE PROTEIN, MUTANT V125L (protein)
Unique Ligands	CA, GOL, SO4

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2VFP \| pdb_00002vfp	Download File View File

Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V349L

Becker, M., Mueller, J.J., Heinemann, U., Seckler, R.

To be published

Released	2008-12-16
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Lederbergvirus P22
Macromolecule	P22 TAILSPIKE PROTEIN (protein)
Unique Ligands	CA, GOL, SO4

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2VFQ \| pdb_00002vfq	Download File View File

Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V450A

Becker, M., Mueller, J.J., Heinemann, U., Seckler, R.

To be published

Released	2008-12-16
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Lederbergvirus P22
Macromolecule	P22 TAILSPIKE PROTEIN, (protein)
Unique Ligands	CA, GOL, SO4

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4DC5 \| pdb_00004dc5	Download File View File

Crystal Structure of Thaumatin Unexposed to Excessive SONICC Imaging Laser Dose.

Mulichak, A.M., Becker, M., Kissick, D.J., Keefe, L.J., Fischetti, R.F., Simpson, G.J.

(2013) Acta Crystallogr D Biol Crystallogr 69: 843-851

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin I (protein)
Unique Ligands	GOL, TLA

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4DC6 \| pdb_00004dc6	Download File View File

Crystal Structure of Thaumatin Exposed to Excessive SONICC Imaging Laser Dose.

Mulichak, A.M., Becker, M., Kissick, D.J., Keefe, L.J., Fischetti, R.F., Simpson, G.J.

(2013) Acta Crystallogr D Biol Crystallogr 69: 843-851

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin I (protein)
Unique Ligands	GOL, TLA

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4DC7 \| pdb_00004dc7	Download File View File

Crystal Structure of Myoglobin Exposed to Excessive SONICC Imaging Laser Dose.

Becker, M., Mulichak, A.M., Kissick, D.J., Fischetti, R.F., Keefe, L.J., Simpson, G.J.

(2013) Acta Crystallogr D Biol Crystallogr 69: 843-851

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, SO4

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4DC8 \| pdb_00004dc8	Download File View File

Crystal Structure of Myoglobin Unexposed to Excessive SONICC Imaging Laser Dose.

Becker, M., Mulichak, A.M., Kissick, D.J., Fischetti, R.F., Keefe, L.J., Simpson, D.J.

(2013) Acta Crystallogr D Biol Crystallogr 69: 843-851

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, SO4

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7B27 \| pdb_00007b27	Download File View File

RBD domain SARS-CoV2 in complex with neutralizing nanobody NM1230

Ostertag, E., Zocher, G., Stehle, T.

(2021) EMBO Rep 22: e52325-e52325

Released	2021-05-12
Method	X-RAY DIFFRACTION 2.902 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Vicugna pacos
Macromolecule	Surface glycoprotein (protein) neutralizing nanobody NM1230 (protein)
Unique Ligands	NAG

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7B3O \| pdb_00007b3o	Download File View File

Crystal structure of the SARS-CoV-2 RBD in complex with STE90-C11 Fab

Kluenemann, T., Van den Heuvel, J.

(2021) Cell Rep 36: 109433-109433

Released	2020-12-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy Chain of Fab Fragment (protein) Light Chain of Fab Fragment (protein) Spike protein S1 (protein)
Unique branched monosaccharides	NAG

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7NKT \| pdb_00007nkt	Download File View File

RBD domain of SARS-CoV2 in complex with neutralizing nanobody NM1226

Ostertag, E., Zocher, G., Stehle, T.

(2021) EMBO Rep 22: e52325-e52325

Released	2021-05-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Vicugna pacos
Macromolecule	Spike protein S1 (protein) neutralizing nanobody NM1226 (protein)
Unique Ligands	NAG, PEG, PO4

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7VCM \| pdb_00007vcm	Download File View File

crystal structure of GINKO1

Wen, Y., Campbell, R.E., Lemieux, M.J.

(2022) PLoS Biol 20: e3001772-e3001772

Released	2022-07-27
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Aequorea victoria Escherichia coli K-12
Macromolecule	Green fluorescent protein,Potassium binding protein Kbp,Green fluorescent protein (protein)
Unique Ligands	K

1 to 22 of 22 Structures

Page 1 of 1

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1P4P | pdb_00001p4p

1RJL | pdb_00001rjl

1U36 | pdb_00001u36

1U3J | pdb_00001u3j

1U3Y | pdb_00001u3y

1U3Z | pdb_00001u3z

1U41 | pdb_00001u41

1U42 | pdb_00001u42

1Z40 | pdb_00001z40

2VFM | pdb_00002vfm

2VFN | pdb_00002vfn

2VFO | pdb_00002vfo

2VFP | pdb_00002vfp

2VFQ | pdb_00002vfq

4DC5 | pdb_00004dc5

4DC6 | pdb_00004dc6

4DC7 | pdb_00004dc7

4DC8 | pdb_00004dc8

7B27 | pdb_00007b27

7B3O | pdb_00007b3o

7NKT | pdb_00007nkt

7VCM | pdb_00007vcm