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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Horiuchi, M."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Homo sapiens (10)
	Streptomyces sp. MSC090213JE08 (3)
	Bombyx mori (1)
	Mus musculus (1)
	Saccharomyces cerevisiae (1)

Taxonomy

	Eukaryota (13)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (9)
	SOLUTION NMR (7)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (6)
	2010 - 2014 (3)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (4)
	Transferases (4)

Symmetry Type

	Asymmetric (15)
	Cyclic (1)

SCOP Classification

	All beta proteins (5)
	Alpha and beta proteins (a/b) (5)
	All alpha proteins (2)
	Artifacts (4)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 16 of 16 Structures

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1J2F \| pdb_00001j2f	Download File View File

X-ray crystal structure of IRF-3 and its functional implications

Takahasi, K., Noda, N., Horiuchi, M., Mori, M., Okabe, Y., Fukuhara, Y., Terasawa, H., Fujita, T., Inagaki, F.

(2003) Nat Struct Biol 10: 922-927

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Interferon regulatory factor 3 (protein)

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1K1Z \| pdb_00001k1z	Download File View File

Solution structure of N-terminal SH3 domain mutant(P33G) of murine Vav

Ogura, K., Nagata, K., Horiuchi, M., Ebisui, E., Hasuda, T., Yuzawa, S., Nishida, M., Hatanaka, H., Inagaki, F.

(2002) J Biomol NMR 22: 37-46

Released	2001-10-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	vav (protein)

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1UCF \| pdb_00001ucf	Download File View File

The Crystal Structure of DJ-1, a Protein Related to Male Fertility and Parkinson's Disease

Honbou, K., Suzuki, N.N., Horiuchi, M., Niki, T., Taira, T., Ariga, H., Inagaki, F.

(2003) J Biological Chem 278: 31380-31384

Released	2003-08-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	RNA-binding protein regulatory subunit (protein)

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1WLZ \| pdb_00001wlz	Download File View File

Crystal structure of DJBP fragment which was obtained by limited proteolysis

Honbou, K., Suzuki, N., Horiuchi, M., Taira, T., Niki, T., Ariga, H., Inagaki, F.

To be published

Released	2005-08-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	CAP-binding protein complex interacting protein 1 isoform a (protein)

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1WMH \| pdb_00001wmh	Download File View File

Crystal structure of a PB1 domain complex of Protein kinase c iota and Par6 alpha

Hirano, Y., Yoshinaga, S., Suzuki, N.N., Horiuchi, M., Kohjima, M., Takeya, R., Sumimoto, H., Inagaki, F.

(2005) J Biological Chem 280: 9653-9661

Released	2004-12-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Partitioning defective-6 homolog alpha (protein) Protein kinase C, iota type (protein)

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2CZO \| pdb_00002czo	Download File View File

Solution Structure of the PX Domain of Bem1p

Maeda, A., Ogura, K., Horiuchi, M., Kumeta, H., Fujioka, Y., Inagaki, F.

To be published

Released	2006-10-03
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Bud emergence protein 1 (protein)

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2D5R \| pdb_00002d5r	Download File View File

Crystal Structure of a Tob-hCaf1 Complex

Horiuchi, M., Suzuki, N.N., Muroya, N., Takahasi, K., Nishida, M., Yoshida, Y., Ikematsu, N., Nakamura, T., Kawamura-Tsuzuku, J., Yamamoto, T., Inagaki, F.

(2009) J Biological Chem 284: 13244-13255

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	CCR4-NOT transcription complex subunit 7 (protein) Tob1 protein (protein)

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2M1W \| pdb_00002m1w	Download File View File

TICAM-2 TIR domain

Enokizono, Y., Kumeta, H., Funami, K., Horiuchi, M., Sarmiento, J., Yamashita, K., Standley, D.M., Matsumoto, M., Seya, T., Inagaki, F.

(2013) Proc Natl Acad Sci U S A 110: 19908-19913

Released	2014-01-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TIR domain-containing adapter molecule 2 (protein)

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2M1X \| pdb_00002m1x	Download File View File

TICAM-1 TIR domain structure

Enokizono, Y., Kumeta, H., Funami, K., Horiuchi, M., Sarmiento, J., Yamashita, K., Standley, D.M., Matsumoto, M., Seya, T., Inagaki, F.

(2013) Proc Natl Acad Sci U S A 110: 19908-19913

Released	2014-01-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TIR domain-containing adapter molecule 1 (protein)

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2RQA \| pdb_00002rqa	Download File View File

Solution structure of LGP2 CTD

Takahasi, K., Kumeta, H., Tsuduki, N., Narita, R., Shigemoto, T., Hirai, R., Yoneyama, M., Horiuchi, M., Ogura, K., Fujita, T., Fuyuhiko, I.

(2009) J Biological Chem 284: 17465-17474

Released	2009-05-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	ATP-dependent RNA helicase DHX58 (protein)
Unique Ligands	ZN

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2RQB \| pdb_00002rqb	Download File View File

Solution structure of MDA5 CTD

Takahasi, K., Kumeta, H., Tsuduki, N., Narita, R., Shigemoto, T., Hirai, R., Yoneyama, M., Horiuchi, M., Ogura, K., Fujita, T., Fuyuhiko, I.

(2009) J Biological Chem 284: 17465-17474

Released	2009-05-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Interferon-induced helicase C domain-containing protein 1 (protein)
Unique Ligands	ZN

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2RQE \| pdb_00002rqe	Download File View File

Solution structure of the silkworm bGRP/GNBP3 N-terminal domain reveals the mechanism for b-1,3-glucan specific recognition

Takahasi, K., Ochiai, M., Horiuchi, M., Kumeta, H., Ogura, K., Ashida, M., Inagaki, F.

(2009) Proc Natl Acad Sci U S A 106: 11679-11684

Released	2009-06-23
Method	SOLUTION NMR
Organisms	Bombyx mori
Macromolecule	Beta-1,3-glucan-binding protein (protein)

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3A77 \| pdb_00003a77	Download File View File

The crystal structure of phosphorylated IRF-3

Takahasi, K., Horiuchi, M., Noda, N.N., Inagaki, F.

(2010) Genes Cells 15: 901-910

Released	2010-08-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Interferon regulatory factor 3 (protein)
Unique Ligands	ACY, MPD

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6KXD \| pdb_00006kxd	Download File View File

The ishigamide ketosynthase/chain length factor

Du, D., Katsuyama, Y., Horiuchi, M., Fushinobu, S., Chen, A., Davis, T., Burkart, M., Ohnishi, Y.

(2020) Nat Chem Biol 16: 776-782

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptomyces sp. MSC090213JE08
Macromolecule	Ketosynthase (protein)
Unique Ligands	ACT, EDO, PO4

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6KXE \| pdb_00006kxe	Download File View File

The ishigamide ketosynthase/chain length factor

Du, D., Katsuyama, Y., Horiuchi, M., Fushinobu, S., Chen, A., Davis, T., Burkart, M., Ohnishi, Y.

(2020) Nat Chem Biol 16: 776-782

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Streptomyces sp. MSC090213JE08
Macromolecule	Ketosynthase (protein)
Unique Ligands	ACT, EDO, PO4, PPI

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6KXF \| pdb_00006kxf	Download File View File

The ishigamide ketosynthase/chain length factor

Du, D., Katsuyama, Y., Horiuchi, M., Fushinobu, S., Chen, A., Davis, T., Burkart, M., Ohnishi, Y.

(2020) Nat Chem Biol 16: 776-782

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Streptomyces sp. MSC090213JE08
Macromolecule	ACP (protein) Ketosynthase (protein)
Unique Ligands	DYF

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1J2F | pdb_00001j2f

X-ray crystal structure of IRF-3 and its functional implications

1K1Z | pdb_00001k1z

Solution structure of N-terminal SH3 domain mutant(P33G) of murine Vav

1UCF | pdb_00001ucf

The Crystal Structure of DJ-1, a Protein Related to Male Fertility and Parkinson's Disease

1WLZ | pdb_00001wlz

Crystal structure of DJBP fragment which was obtained by limited proteolysis

1WMH | pdb_00001wmh

Crystal structure of a PB1 domain complex of Protein kinase c iota and Par6 alpha

2CZO | pdb_00002czo

Solution Structure of the PX Domain of Bem1p

2D5R | pdb_00002d5r

Crystal Structure of a Tob-hCaf1 Complex

2M1W | pdb_00002m1w

TICAM-2 TIR domain

2M1X | pdb_00002m1x

TICAM-1 TIR domain structure

2RQA | pdb_00002rqa

Solution structure of LGP2 CTD

2RQB | pdb_00002rqb

Solution structure of MDA5 CTD

2RQE | pdb_00002rqe

Solution structure of the silkworm bGRP/GNBP3 N-terminal domain reveals the mechanism for b-1,3-glucan specific recognition

3A77 | pdb_00003a77

The crystal structure of phosphorylated IRF-3

6KXD | pdb_00006kxd

The ishigamide ketosynthase/chain length factor

6KXE | pdb_00006kxe

The ishigamide ketosynthase/chain length factor

6KXF | pdb_00006kxf

The ishigamide ketosynthase/chain length factor

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1J2F | pdb_00001j2f

1K1Z | pdb_00001k1z

1UCF | pdb_00001ucf

1WLZ | pdb_00001wlz

1WMH | pdb_00001wmh

2CZO | pdb_00002czo

2D5R | pdb_00002d5r

2M1W | pdb_00002m1w

2M1X | pdb_00002m1x

2RQA | pdb_00002rqa

2RQB | pdb_00002rqb

2RQE | pdb_00002rqe

3A77 | pdb_00003a77

6KXD | pdb_00006kxd

6KXE | pdb_00006kxe

6KXF | pdb_00006kxf