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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ji, J."

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Search Summary

This query matches 4 Structures.

Refinements

Structure Determination Methodology

experimental (4)

Scientific Name of Source Organism

	Homo sapiens (1)
	Sinorhizobium meliloti SM11 (1)

Taxonomy

	Bacteria (1)
	Eukaryota (1)

Experimental Method

	SOLUTION NMR (2)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

	DNA (2)
	Protein (2)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.5 - 3.0 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2015 - 2019 (1)
	2025 - 2029 (1)

Enzyme Classification Name

Oxidoreductases (1)

Symmetry Type

Cyclic (2)

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1 to 4 of 4 Structures

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1KVH \| pdb_00001kvh	Download File View File

NCSi-gb-bulge-DNA complex induced formation of a DNA bulge structure by a molecular wedge ligand-post-activated neocarzinostatin chromophore

Gao, X., Stassinopoulos, A., Ji, J., Kwon, Y., Bare, S., Goldberg, I.H.

(2002) Biochemistry 41: 5131-5143

Released	2002-06-19
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPCPGPAPTPGPC)-3' (nucleic acid) 5'-D(GPCPAPAPTPTPCPGPGPG)-3' (nucleic acid)
Unique Ligands	NCS

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2NEO \| pdb_00002neo	Download File View File

SOLUTION NMR STRUCTURE OF A TWO-BASE DNA BULGE COMPLEXED WITH AN ENEDIYNE CLEAVING ANALOG, 11 STRUCTURES

Stassinopoulos, A., Ji, J., Gao, X., Goldberg, I.H.

(1996) Science 272: 1943-1946

Released	1998-01-28
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPCPCPGPAPTPGPCPPGEGPCPAPAPTPTPCPGPGP*G)-3') (nucleic acid)
Unique Ligands	NCS

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4WJA \| pdb_00004wja	Download File View File

Crystal Structure of PAXX

Xing, M., Yang, M., Huo, W., Feng, F., Wei, L., Ning, S., Yan, Z., Li, W., Wang, Q., Hou, M., Dong, C., Guo, R., Gao, G., Ji, J., Lan, L., Liang, H., Xu, D.

(2015) Nat Commun 6: 6233-6233

Released	2015-03-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Uncharacterized protein C9orf142 (protein)

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9D7L \| pdb_00009d7l	Download File View File

Minimal PutA proline dehydrogenase domain (design #2) covalently inactivated by (S)-but-3-yn-2-ylglycine

Tanner, J.J., Meeks, K.R., Ji, J.

(2025) Arch Biochem Biophys 765: 110319-110319

Released	2025-02-05
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Sinorhizobium meliloti SM11
Macromolecule	Bifunctional protein PutA (protein)
Unique Ligands	A1BC6, FMT

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1KVH | pdb_00001kvh

NCSi-gb-bulge-DNA complex induced formation of a DNA bulge structure by a molecular wedge ligand-post-activated neocarzinostatin chromophore

2NEO | pdb_00002neo

SOLUTION NMR STRUCTURE OF A TWO-BASE DNA BULGE COMPLEXED WITH AN ENEDIYNE CLEAVING ANALOG, 11 STRUCTURES

4WJA | pdb_00004wja

Crystal Structure of PAXX

9D7L | pdb_00009d7l

Minimal PutA proline dehydrogenase domain (design #2) covalently inactivated by (S)-but-3-yn-2-ylglycine

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

1KVH | pdb_00001kvh

NCSi-gb-bulge-DNA complex induced formation of a DNA bulge structure by a molecular wedge ligand-post-activated neocarzinostatin chromophore

2NEO | pdb_00002neo

SOLUTION NMR STRUCTURE OF A TWO-BASE DNA BULGE COMPLEXED WITH AN ENEDIYNE CLEAVING ANALOG, 11 STRUCTURES

4WJA | pdb_00004wja

Crystal Structure of PAXX

9D7L | pdb_00009d7l

Minimal PutA proline dehydrogenase domain (design #2) covalently inactivated by (S)-but-3-yn-2-ylglycine