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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Jordan, D.B."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Pyricularia grisea (15)
	Tetradesmus obliquus (4)
	Escherichia coli (3)
	Rhodotorula toruloides (2)
	Selenomonas ruminantium (1)
	Spinacia oleracea (1)

Taxonomy

	Eukaryota (22)
	Bacteria (4)

Experimental Method

X-RAY DIFFRACTION (26)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (4)
	1.5 - 2.0 (11)
	2.0 - 2.5 (7)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (20)
	2005 - 2009 (1)

Enzyme Classification Name

	Lyases (14)
	Isomerases (7)
	Hydrolases (4)
	Oxidoreductases (3)
	Transferases (3)

Symmetry Type

	Cyclic (16)
	Dihedral (8)
	Asymmetric (5)
	Icosahedral (1)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (10)
	Alpha and beta proteins (a+b) (12)
	All beta proteins (6)
	Artifacts (4)
	All alpha proteins (2)

AllSelected

1 to 25 of 26 Structures

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1C2Y \| pdb_00001c2y	Download File View File

CRYSTAL STRUCTURES OF A PENTAMERIC FUNGAL AND AN ICOSAHEDRAL PLANT LUMAZINE SYNTHASE REVEALS THE STRUCTURAL BASIS FOR DIFFERENCES IN ASSEMBLY

Persson, K., Schneider, G., Jordan, D.B., Viitanen, P.V., Sandalova, T.

(1999) Protein Sci 8: 2355-2365

Released	2000-07-30
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Spinacia oleracea
Macromolecule	PROTEIN (LUMAZINE SYNTHASE) (protein)
Unique Ligands	LMZ

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1C41 \| pdb_00001c41	Download File View File

CRYSTAL STRUCTURES OF A PENTAMERIC FUNGAL AND AN ICOSAHEDRAL PLANT LUMAZINE SYNTHASE REVEALS THE STRUCTURAL BASIS FOR DIFFERENCES IN ASSEMBLY

Persson, K., Schneider, G., Jordan, D.B., Viitanen, P.V., Sandalova, T.

(1999) Protein Sci 8: 2355-2365

Released	2000-08-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Pyricularia grisea
Macromolecule	LUMAZINE SYNTHASE (protein)
Unique Ligands	LMZ, SO4

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1DOH \| pdb_00001doh	Download File View File

STRUCTURE OF TRIHYDROXYNAPHTHALENE REDUCTASE IN COMPLEX WITH NADPH AND 4-NITRO-INDEN-1-ONE

Liao, D.I., Basarab, G.S., Gatenby, A.A., Jordan, D.B.

(2001) Structure 9: 19-28

Released	2001-06-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyricularia grisea
Macromolecule	TRIHYDROXYNAPHTHALENE REDUCTASE (protein)
Unique Ligands	NDP, NID

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1FC6 \| pdb_00001fc6	Download File View File

PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE

Liao, D.I., Qian, J., Chisholm, D.A., Jordan, D.B., Diner, B.A.

(2000) Nat Struct Biol 7: 749-753

Released	2001-01-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tetradesmus obliquus
Macromolecule	PHOTOSYSTEM II D1 PROTEASE (protein)

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1FC7 \| pdb_00001fc7	Download File View File

PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE

Liao, D.I., Qian, J., Chisholm, D.A., Jordan, D.B., Diner, B.A.

(2000) Nat Struct Biol 7: 749-753

Released	2001-01-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tetradesmus obliquus
Macromolecule	PHOTOSYSTEM II D1 PROTEASE (protein)

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1FC9 \| pdb_00001fc9	Download File View File

PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE

Liao, D.I., Qian, J., Chisholm, D.A., Jordan, D.B., Diner, B.A.

(2000) Nat Struct Biol 7: 749-753

Released	2001-01-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Tetradesmus obliquus
Macromolecule	PHOTOSYSTEM II D1 PROTEASE (protein)

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1FCF \| pdb_00001fcf	Download File View File

PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE

Liao, D.I., Qian, J., Chisholm, D.A., Jordan, D.B., Diner, B.A.

(2000) Nat Struct Biol 7: 749-753

Released	2001-01-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Tetradesmus obliquus
Macromolecule	PHOTOSYSTEM II D1 PROTEASE (protein)
Unique Ligands	SO4

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1G0N \| pdb_00001g0n	Download File View File

STRUCTURE OF TRIHYDROXYNAPHTHALENE REDUCTASE IN COMPLEX WITH NADPH AND 4,5,6,7-TETRACHLORO-PHTHALIDE

Liao, D., Basarab, G.S., Gatenby, A.A., Valent, B., Jordan, D.B.

(2001) Structure 9: 19-28

Released	2001-06-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyricularia grisea
Macromolecule	TRIHYDROXYNAPHTHALENE REDUCTASE (protein)
Unique Ligands	NDP, PHH

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1G0O \| pdb_00001g0o	Download File View File

STRUCTURE OF TRIHYDROXYNAPHTHALENE REDUCTASE IN COMPLEX WITH NADPH AND PYROQUILON

Liao, D., Basarab, G.S., Gatenby, A.A., Valent, B., Jordan, D.B.

(2001) Structure 9: 19-28

Released	2001-06-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pyricularia grisea
Macromolecule	TRIHYDROXYNAPHTHALENE REDUCTASE (protein)
Unique Ligands	NDP, PYQ

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1G57 \| pdb_00001g57	Download File View File

CRYSTAL STRUCTURE OF 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE

Liao, D.-I., Calabrese, J.C., Wawrzak, Z., Viitanen, P.V., Jordan, D.B.

(2001) Structure 9: 11-18

Released	2001-04-30
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli
Macromolecule	3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE (protein)
Unique Ligands	CS

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1G58 \| pdb_00001g58	Download File View File

CRYSTAL STRUCTURE OF 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE GOLD DERIVATIVE

Liao, D.-I., Calabrese, J.C., Wawrzak, Z., Viitanen, P.V., Jordan, D.B.

(2001) Structure 9: 11-18

Released	2001-04-30
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli
Macromolecule	3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE (protein)
Unique Ligands	AU

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1I8D \| pdb_00001i8d	Download File View File

CRYSTAL STRUCTURE OF RIBOFLAVIN SYNTHASE

Liao, D.-I., Wawrzak, Z., Calabrese, J.C., Viitanen, P.V., Jordan, D.B.

(2001) Structure 9: 399-408

Released	2001-09-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	RIBOFLAVIN SYNTHASE (protein)

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1JA9 \| pdb_00001ja9	Download File View File

Crystal structure of 1,3,6,8-tetrahydroxynaphthalene reductase in complex with NADPH and pyroquilon

Liao, D.-I., Thompson, J.E., Fahnestock, S., Valent, B., Jordan, D.B.

(2001) Biochemistry 40: 8696-8704

Released	2001-09-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pyricularia grisea
Macromolecule	1,3,6,8-tetrahydroxynaphthalene reductase (protein)
Unique Ligands	NDP, PYQ

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1K49 \| pdb_00001k49	Download File View File

Crystal Structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase (cation free form)

Liao, D.-I., Zheng, Y.-J., Viitanen, P.V., Jordan, D.B.

(2002) Biochemistry 41: 1795-1806

Released	2002-03-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pyricularia grisea
Macromolecule	3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase (protein)
Unique Ligands	SO4

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1K4I \| pdb_00001k4i	Download File View File

Crystal Structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase in complex with two Magnesium ions

Liao, D.-I., Zheng, Y.-J., Viitanen, P.V., Jordan, D.B.

(2002) Biochemistry 41: 1795-1806

Released	2002-03-06
Method	X-RAY DIFFRACTION 0.98 Å
Organisms	Pyricularia grisea
Macromolecule	3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase (protein)
Unique Ligands	MG, SO4

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1K4L \| pdb_00001k4l	Download File View File

Crystal Structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase in complex with two Manganese ions

Liao, D.-I., Zheng, Y.-J., Viitanen, P.V., Jordan, D.B.

(2002) Biochemistry 41: 1795-1806

Released	2002-03-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyricularia grisea
Macromolecule	3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase (protein)
Unique Ligands	MN, SO4

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1K4O \| pdb_00001k4o	Download File View File

Crystal Structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase in complex with one Manganese, and a glycerol

Liao, D.-I., Zheng, Y.-J., Viitanen, P.V., Jordan, D.B.

(2002) Biochemistry 41: 1795-1806

Released	2002-03-06
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Pyricularia grisea
Macromolecule	3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase (protein)
Unique Ligands	GOL, MN, SO4

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1K4P \| pdb_00001k4p	Download File View File

Crystal Structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase in complex with zinc ions

Liao, D.-I., Zheng, Y.-J., Viitanen, P.V., Jordan, D.B.

(2002) Biochemistry 41: 1795-1806

Released	2002-03-06
Method	X-RAY DIFFRACTION 1 Å
Organisms	Pyricularia grisea
Macromolecule	3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase (protein)
Unique Ligands	SO4, ZN

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1T6J \| pdb_00001t6j	Download File View File

Crystal Structure of Phenylalanine Ammonia Lyase from Rhodosporidium toruloides

Calabrese, J.C., Jordan, D.B.

(2004) Biochemistry 43: 11403-11416

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rhodotorula toruloides
Macromolecule	phenylalanine ammonia-lyase (protein)
Unique Ligands	CIN

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1T6P \| pdb_00001t6p	Download File View File

Crystal Structure of Phenylalanine Ammonia Lyase from Rhodosporidium toruloides

Calabrese, J.C., Jordan, D.B.

(2004) Biochemistry 43: 11403-11416

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Rhodotorula toruloides
Macromolecule	phenylalanine ammonia-lyase (protein)

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3C2U \| pdb_00003c2u	Download File View File

Structure of the two subsite D-xylosidase from Selenomonas ruminantium in complex with 1,3-bis[tris(hydroxymethyl)methylamino]propane

Brunzelle, J.S., Jordan, D.B., McCaslin, D.R., Olczak, A., Wawrzak, A.

(2008) Arch Biochem Biophys 474: 157-166

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Selenomonas ruminantium
Macromolecule	Xylosidase/arabinosidase (protein)
Unique Ligands	B3P

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3STD \| pdb_00003std	Download File View File

SCYTALONE DEHYDRATASE AND CYANOCINNOLINE INHIBITOR

Chen, J.M., Xu, S.L., Wawrzak, Z., Basarab, G.S., Jordan, D.B.

(1998) Biochemistry 37: 17735-17744

Released	1999-10-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pyricularia grisea
Macromolecule	PROTEIN (SCYTALONE DEHYDRATASE) (protein)
Unique Ligands	CA, MQ0