RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Kashima, A."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Homo sapiens (6)
	Bacillus sp. YM-1 (2)
	Bos taurus (2)
	Canis lupus familiaris (2)
	Mus musculus (2)
	Saccharomyces cerevisiae (1)
	Streptomyces sp. X-119-6 (1)

Taxonomy

	Eukaryota (13)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (12)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (6)
	2.5 - 3.0 (6)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (1)
	2005 - 2009 (2)
	2020 - 2024 (7)

Enzyme Classification Name

	Hydrolases (10)
	Oxidoreductases (1)
	Transferases (2)
	Isomerases (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (8)

SCOP Classification

	All beta proteins (3)
	All alpha proteins (2)
	Multi-domain proteins (alpha and beta) (2)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 16 of 16 Structures

Page 1 of 1

Sort by

Explore in 3D

1A0G \| pdb_00001a0g	Download File View File

L201A MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE-5'-PHOSPHATE

Sugio, S., Kashima, A., Kishimoto, K., Peisach, D., Petsko, G.A., Ringe, D., Yoshimura, T., Esaki, N.

(1998) Protein Eng 11: 613-619

Released	1998-06-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus sp. YM-1
Macromolecule	D-AMINO ACID AMINOTRANSFERASE (protein)
Unique Ligands	PMP

Explore in 3D

1AB9 \| pdb_00001ab9	Download File View File

CRYSTAL STRUCTURE OF BOVINE GAMMA-CHYMOTRYPSIN

Sugio, S., Kashima, A., Inoue, Y., Maeda, I., Nose, T., Shimohigashi, Y.

(1998) Eur J Biochem 255: 12-23

Released	1997-08-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bos taurus
Macromolecule	GAMMA-CHYMOTRYPSIN (protein) PENTAPEPTIDE (TPGVY) (protein)
Unique Ligands	SO4

Explore in 3D

1AFQ \| pdb_00001afq	Download File View File

CRYSTAL STRUCTURE OF BOVINE GAMMA-CHYMOTRYPSIN COMPLEXED WITH A SYNTHETIC INHIBITOR

Sugio, S., Kashima, A., Inoue, Y., Maeda, I., Nose, T., Shimohigashi, Y.

(1998) Eur J Biochem 255: 12-23

Released	1997-09-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	BOVINE GAMMA-CHYMOTRYPSIN (protein)
Unique Ligands	0FG, SO4

Explore in 3D

1AO6 \| pdb_00001ao6	Download File View File

CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN

Sugio, S., Mochizuki, S., Noda, M., Kashima, A.

(1999) Protein Eng 12: 439-446

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	SERUM ALBUMIN (protein)

Explore in 3D

1BM0 \| pdb_00001bm0	Download File View File

CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN

Sugio, S., Kashima, A., Mochizuki, S., Noda, M., Kobayashi, K.

(1999) Protein Eng 12: 439-446

Released	1999-07-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	SERUM ALBUMIN (protein)

Explore in 3D

1IST \| pdb_00001ist	Download File View File

Crystal structure of yeast cyclophilin A, CPR1

Konno, M., Kashima, A., Yoshikawa-Fujioka, S.

To be published

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cyclophilin A (protein)

Explore in 3D

1WRM \| pdb_00001wrm	Download File View File

Crystal structure of JSP-1

Yokota, T., Kashima, A., Kato, R., Sugio, S.

(2006) Proteins 66: 272-278

Released	2005-10-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	dual specificity phosphatase 22 (protein)
Unique Ligands	MES

Explore in 3D

2DAB \| pdb_00002dab	Download File View File

L201A MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAL-5'-PHOSPHATE

Sugio, S., Kashima, A., Kishimoto, K., Peisach, D., Petsko, G.A., Ringe, D., Yoshimura, T., Esaki, N.

(1998) Protein Eng 11: 613-619

Released	1998-06-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus sp. YM-1
Macromolecule	D-AMINO ACID AMINOTRANSFERASE (protein)
Unique Ligands	PLP

Explore in 3D

2E1M \| pdb_00002e1m	Download File View File

Crystal Structure of L-Glutamate Oxidase from Streptomyces sp. X-119-6

Sasaki, C., Kashima, A., Sakaguchi, C., Mizuno, H., Arima, J., Kusakabe, H., Tamura, T., Sugio, S., Inagaki, K.

(2009) FEBS J 276: 4318-4327

Released	2007-11-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptomyces sp. X-119-6
Macromolecule	L-glutamate oxidase (protein)
Unique Ligands	FAD, PO4

Explore in 3D

7XGK \| pdb_00007xgk	Download File View File

Human renin in complex with compound1

Kashima, A.

(2022) ACS Med Chem Lett 13: 1351-1357

Released	2022-08-31
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Renin (protein)
Unique Ligands	NAG, UNL

Explore in 3D

7XGO \| pdb_00007xgo	Download File View File

Human renin in complex with compound2

Kashima, A.

(2022) ACS Med Chem Lett 13: 1351-1357

Released	2022-08-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Renin (protein)
Unique Ligands	NAG, UNL

Explore in 3D

7XGP \| pdb_00007xgp	Download File View File

Human renin in complex with compound3

Kashima, A.

(2022) J Med Chem 65: 10882-10897

Released	2022-09-07
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Renin (protein)
Unique Ligands	NAG, UNL

Explore in 3D

8YPK \| pdb_00008ypk	Download File View File

mouse proteasome 20S subunit in complex with compound 1

Kashima, A., Arai, Y.

(2024) Bioorg Med Chem 109: 117790-117790

Released	2024-07-31
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Mus musculus
Macromolecule	Unique protein chains: 14
Unique Ligands	A1L0C

Explore in 3D

8YSX \| pdb_00008ysx	Download File View File

canine immunoproteasome 20S subunit in complex with compound 2

Kashima, A., Arai, Y.

(2024) Bioorg Med Chem 109: 117790-117790

Released	2024-07-31
Method	ELECTRON MICROSCOPY 2.2 Å
Organisms	Canis lupus familiaris
Macromolecule	Unique protein chains: 14
Unique Ligands	A1L0D

Explore in 3D

8YVG \| pdb_00008yvg	Download File View File

canine immunoproteasome 20S subunit in complex with compound 1

Kashima, A., Arai, Y.

(2024) Bioorg Med Chem 109: 117790-117790

Released	2024-07-31
Method	ELECTRON MICROSCOPY 2 Å
Organisms	Canis lupus familiaris
Macromolecule	Unique protein chains: 14
Unique Ligands	A1L0C

Explore in 3D

8YVP \| pdb_00008yvp	Download File View File

canine immunoproteasome 20S subunit in complex with compound 1

Kashima, A., Arai, Y.

(2024) Bioorg Med Chem 109: 117790-117790

Released	2024-07-31
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Mus musculus
Macromolecule	Unique protein chains: 14
Unique Ligands	A1L0D, THR

1 to 16 of 16 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1A0G | pdb_00001a0g

L201A MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE-5'-PHOSPHATE

1AB9 | pdb_00001ab9

CRYSTAL STRUCTURE OF BOVINE GAMMA-CHYMOTRYPSIN

1AFQ | pdb_00001afq

CRYSTAL STRUCTURE OF BOVINE GAMMA-CHYMOTRYPSIN COMPLEXED WITH A SYNTHETIC INHIBITOR

1AO6 | pdb_00001ao6

CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN

1BM0 | pdb_00001bm0

CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN

1IST | pdb_00001ist

Crystal structure of yeast cyclophilin A, CPR1

1WRM | pdb_00001wrm

Crystal structure of JSP-1

2DAB | pdb_00002dab

L201A MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAL-5'-PHOSPHATE

2E1M | pdb_00002e1m

Crystal Structure of L-Glutamate Oxidase from Streptomyces sp. X-119-6

7XGK | pdb_00007xgk

Human renin in complex with compound1

7XGO | pdb_00007xgo

Human renin in complex with compound2

7XGP | pdb_00007xgp

Human renin in complex with compound3

8YPK | pdb_00008ypk

mouse proteasome 20S subunit in complex with compound 1

8YSX | pdb_00008ysx

canine immunoproteasome 20S subunit in complex with compound 2

8YVG | pdb_00008yvg

canine immunoproteasome 20S subunit in complex with compound 1

8YVP | pdb_00008yvp

canine immunoproteasome 20S subunit in complex with compound 1

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A0G | pdb_00001a0g

1AB9 | pdb_00001ab9

1AFQ | pdb_00001afq

1AO6 | pdb_00001ao6

1BM0 | pdb_00001bm0

1IST | pdb_00001ist

1WRM | pdb_00001wrm

2DAB | pdb_00002dab

2E1M | pdb_00002e1m

7XGK | pdb_00007xgk

7XGO | pdb_00007xgo

7XGP | pdb_00007xgp

8YPK | pdb_00008ypk

8YSX | pdb_00008ysx

8YVG | pdb_00008yvg

8YVP | pdb_00008yvp