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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kim, E.E."

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Search Summary

This query matches 62 Structures.

Refinements

Structure Determination Methodology

experimental (62)

Scientific Name of Source Organism

	Homo sapiens (23)
	Mus musculus (13)
	Bacillus subtilis (4)
	Bos taurus (4)
	Caenorhabditis elegans (4)
	Streptococcus pyogenes M1 GAS (4)
	Bacillus cereus ATCC 14579 (3)
	Bacillus cereus (2)
	Enterococcus faecalis (2)
	Saccharomyces cerevisiae S288C (2)

More...

Taxonomy

	Eukaryota (41)
	Bacteria (20)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (62)

Polymer Entity Type

Protein (62)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (22)
	2.0 - 2.5 (13)
	2.5 - 3.0 (15)
	3.0 - 3.5 (6)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (3)
	2005 - 2009 (11)
	2010 - 2014 (15)
	2015 - 2019 (20)
	2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (37)
	Oxidoreductases (10)
	Isomerases (6)
	Transferases (5)
	Lyases (3)

Symmetry Type

	Asymmetric (38)
	Cyclic (21)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (15)
	Alpha and beta proteins (a+b) (20)
	Artifacts (11)
	All beta proteins (7)
	All alpha proteins (2)

AllSelected

1 to 25 of 62 Structures

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1ALK \| pdb_00001alk	Download File View File

REACTION MECHANISM OF ALKALINE PHOSPHATASE BASED ON CRYSTAL STRUCTURES. TWO METAL ION CATALYSIS

Kim, E.E., Wyckoff, W.

(1991) J Mol Biology 218: 449-464

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	ALKALINE PHOSPHATASE (protein)
Unique Ligands	MG, PO4, ZN

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1HPV \| pdb_00001hpv	Download File View File

CRYSTAL STRUCTURE OF HIV-1 PROTEASE IN COMPLEX WITH VX-478, A POTENT AND ORALLY BIOAVAILABLE INHIBITOR OF THE ENZYME

Kim, E.E.

(1995) J Am Chem Soc 117: 1181-1182

Released	1995-03-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	478

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1ICE \| pdb_00001ice	Download File View File

STRUCTURE AND MECHANISM OF INTERLEUKIN-1BETA CONVERTING ENZYME

Wilson, K.P., Griffith, J.P., Kim, E.E., Navia, M.A.

(1994) Nature 370: 270-275

Released	1995-07-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	INTERLEUKIN-1 BETA CONVERTING ENZYME (protein) TETRAPEPTIDE ALDEHYDE (protein)

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1RNU \| pdb_00001rnu	Download File View File

REFINEMENT OF THE CRYSTAL STRUCTURE OF RIBONUCLEASE S. COMPARISON WITH AND BETWEEN THE VARIOUS RIBONUCLEASE A STRUCTURES

Kim, E.E., Varadarajan, R., Wyckoff, H.W., Richards, F.M.

(1992) Biochemistry 31: 12304-12314

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE S (protein)
Unique Ligands	SO4

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1RNV \| pdb_00001rnv	Download File View File

REFINEMENT OF THE CRYSTAL STRUCTURE OF RIBONUCLEASE S. COMPARISON WITH AND BETWEEN THE VARIOUS RIBONUCLEASE A STRUCTURES

Kim, E.E., Varadarajan, R., Wyckoff, H.W., Richards, F.M.

(1992) Biochemistry 31: 12304-12314

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE S (protein)
Unique Ligands	SO4

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1TCO \| pdb_00001tco	Download File View File

TERNARY COMPLEX OF A CALCINEURIN A FRAGMENT, CALCINEURIN B, FKBP12 AND THE IMMUNOSUPPRESSANT DRUG FK506 (TACROLIMUS)

Griffith, J.P., Kim, J.L., Kim, E.E., Sintchak, M.D., Thomson, J.A., Fitzgibbon, M.J., Fleming, M.A., Caron, P.R., Hsiao, K., Navia, M.A.

(1995) Cell 82: 507-522

Released	1997-02-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus
Macromolecule	FK506-BINDING PROTEIN (protein) SERINE/THREONINE PHOSPHATASE B2 (protein)
Unique Ligands	CA, FE, FK5, MYR, PO4, ZN

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1WS0 \| pdb_00001ws0	Download File View File

Structure analysis of peptide deformylase from Bacillus cereus

Moon, J.H., Park, J.K., Kim, E.E.

(2005) Proteins 61: 217-220

Released	2005-09-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus cereus
Macromolecule	peptide deformylase 1 (protein)
Unique Ligands	NI

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1WS1 \| pdb_00001ws1	Download File View File

Structure analysis of peptide deformylase from Bacillus cereus

Moon, J.H., Park, J.K., Kim, E.E.

(2005) Proteins 61: 217-220

Released	2005-09-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus cereus
Macromolecule	Peptide deformylase 1 (protein)
Unique Ligands	BB2, NI

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2OHG \| pdb_00002ohg	Download File View File

Structural Basis for Glutamte Racemase Inhibition

Kim, E.E.

(2007) J Mol Biology 372: 434-443

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptococcus pyogenes M1 GAS
Macromolecule	Glutamate racemase (protein)

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2OHO \| pdb_00002oho	Download File View File

Structural Basis for Glutamate Racemase Inhibitor

Kim, E.E.

(2007) J Mol Biology 372: 434-443

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Streptococcus pyogenes M1 GAS
Macromolecule	Glutamate Racemase (protein)
Unique Ligands	SO4

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2OHV \| pdb_00002ohv	Download File View File

Structural Basis for Glutamate Racemase Inhibition

Kim, E.E.

(2007) J Mol Biology 372: 434-443

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptococcus pyogenes M1 GAS
Macromolecule	Glutamate Racemase (protein)
Unique Ligands	NHL

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2OKL \| pdb_00002okl	Download File View File

Crystal structure of Peptide Deformylase 2 with actinonin from Bacillus cereus

Kim, E.E.

(2007) J Biochem Mol Biol 40: 1050-1057

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus cereus ATCC 14579
Macromolecule	Peptide deformylase 2 (protein)
Unique Ligands	BB2, CIT, ZN

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2OS0 \| pdb_00002os0	Download File View File

Structures of actinonin bound peptide deformylases from E. faecalis and S. pyogenes

Kim, E.E., Kim, K.-H., Moon, J.H., Choi, K., Lee, H.K., Park, H.S.

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Enterococcus faecalis
Macromolecule	Peptide deformylase (protein)
Unique Ligands	NI, SO4

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2OS1 \| pdb_00002os1	Download File View File

Structures of actinonin bound peptide deformylases from E. faecalis and S. pyogenes

Kim, E.E., Kim, K.-H., Moon, J.H., Choi, K., Lee, H.K., Park, H.S.

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Enterococcus faecalis
Macromolecule	Peptide deformylase (protein)
Unique Ligands	BB2, NI, SO4

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2OS3 \| pdb_00002os3	Download File View File

Structures of actinonin bound peptide deformylases from E. faecalis and S. pyogenes

Kim, E.E., Kim, K.-H., Moon, J.H., Choi, K., Lee, H.K., Parh, H.S.

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Streptococcus pyogenes M1 GAS
Macromolecule	Peptide deformylase (protein)
Unique Ligands	BB2, CO

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2RNS \| pdb_00002rns	Download File View File

REFINEMENT OF THE CRYSTAL STRUCTURE OF RIBONUCLEASE S. COMPARISON WITH AND BETWEEN THE VARIOUS RIBONUCLEASE A STRUCTURES

Kim, E.E., Varadarajan, R., Wyckoff, H.W., Richards, F.M.

(1992) Biochemistry 31: 12304-12314

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE S (protein)
Unique Ligands	SO4

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2Z84 \| pdb_00002z84	Download File View File

Insights from crystal and solution structures of mouse UfSP1

Ha, B.H., Ahn, H.C., Kang, S.H., Tanaka, K., Chung, C.H., Kim, E.E.

(2008) J Biological Chem 283: 14893-14900

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Ufm1-specific protease 1 (protein)

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3E21 \| pdb_00003e21	Download File View File

Crystal structure of FAF-1 UBA Domain

Park, J.K., Kim, E.E.

To be published

Released	2009-08-11
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	FAS-associated factor 1 (protein)

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3IM8 \| pdb_00003im8	Download File View File

Crystal structure of MCAT from Streptococcus pneumoniae

Hong, S.K., Kim, K.H., Park, J.K., Kim, Y.M., Kim, E.E.

(2010) FEBS Lett 584: 1240-1244

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus pneumoniae R6
Macromolecule	Malonyl acyl carrier protein transacylase (protein)
Unique Ligands	ACT

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3IM9 \| pdb_00003im9	Download File View File

Crystal structure of MCAT from Staphylococcus aureus

Hong, S.K., Kim, K.H., Park, J.K., Kim, Y.M., Kim, E.E.

(2010) FEBS Lett 584: 1240-1244

Released	2010-06-16
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Malonyl CoA-acyl carrier protein transacylase (protein)
Unique Ligands	ACT, CA, SO4

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3OIC \| pdb_00003oic	Download File View File

Crystal Structure of Enoyl-ACP Reductases III (FabL) from B. subtilis (apo form)

Kim, K.-H., Ha, B.H., Kim, S.J., Hong, S.K., Hwang, K.Y., Kim, E.E.

(2011) J Mol Biology 406: 403-415

Released	2011-01-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADPH] (protein)
Unique Ligands	SO4

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3OID \| pdb_00003oid	Download File View File

Crystal Structure of Enoyl-ACP Reductases III (FabL) from B. subtilis (complex with NADP and TCL)

Kim, K.-H., Ha, B.H., Kim, S.J., Hong, S.K., Hwang, K.Y., Kim, E.E.

(2011) J Mol Biology 406: 403-415

Released	2011-01-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus subtilis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADPH] (protein)
Unique Ligands	NDP, TCL

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3OIF \| pdb_00003oif	Download File View File

Crystal Structure of Enoyl-ACP Reductases I (FabI) from B. subtilis (complex with NAD and TCL)

Kim, K.-H., Ha, B.H., Kim, S.J., Hong, S.K., Hwang, K.Y., Kim, E.E.

(2011) J Mol Biology 406: 403-415

Released	2011-01-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus subtilis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	NAD, TCL

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3OIG \| pdb_00003oig	Download File View File

Crystal Structure of Enoyl-ACP Reductases I (FabI) from B. subtilis (complex with NAD and INH)

Kim, K.-H., Ha, B.H., Kim, S.J., Hong, S.K., Hwang, K.Y., Kim, E.E.

(2011) J Mol Biology 406: 403-415

Released	2011-01-05
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Bacillus subtilis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	IMJ, NAD

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3OJE \| pdb_00003oje	Download File View File

Crystal Structure of the Bacillus cereus Enoyl-Acyl Carrier Protein Reductase (Apo form)

Kim, S.J., Ha, B.H., Kim, K.H., Hong, S.K., Suh, S.W., Kim, E.E.

(2010) Biochem Biophys Res Commun 400: 517-522

Released	2010-09-08
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Bacillus cereus ATCC 14579
Macromolecule	Enoyl-[acyl-carrier-protein] reductase (FabL) (NADPH) (protein)

1 to 25 of 62 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ALK | pdb_00001alk

1HPV | pdb_00001hpv

1ICE | pdb_00001ice

1RNU | pdb_00001rnu

1RNV | pdb_00001rnv

1TCO | pdb_00001tco

1WS0 | pdb_00001ws0

1WS1 | pdb_00001ws1

2OHG | pdb_00002ohg

2OHO | pdb_00002oho

2OHV | pdb_00002ohv

2OKL | pdb_00002okl

2OS0 | pdb_00002os0

2OS1 | pdb_00002os1

2OS3 | pdb_00002os3

2RNS | pdb_00002rns

2Z84 | pdb_00002z84

3E21 | pdb_00003e21

3IM8 | pdb_00003im8

3IM9 | pdb_00003im9

3OIC | pdb_00003oic

3OID | pdb_00003oid

3OIF | pdb_00003oif

3OIG | pdb_00003oig

3OJE | pdb_00003oje