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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kim, H.W."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Oryza sativa Japonica Group (5)
	Paenibacillus sp. (4)
	Globisporangium ultimum (2)
	Deschampsia antarctica (1)
	Dictyostelium discoideum (1)
	Escherichia coli (1)
	Hordeum vulgare (1)
	Staphylococcus aureus (1)
	Sus scrofa (1)

Taxonomy

	Eukaryota (10)
	Bacteria (6)

Experimental Method

	X-RAY DIFFRACTION (15)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (8)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2015 - 2019 (7)
	2020 - 2024 (6)

Enzyme Classification Name

	Oxidoreductases (6)
	Hydrolases (2)
	Transferases (2)

Symmetry Type

	Asymmetric (12)
	Cyclic (4)

SCOP Classification

	All beta proteins (1)
	Small proteins (2)
	Alpha and beta proteins (a/b) (2)
	Alpha and beta proteins (a+b) (1)
	Artifacts (1)

AllSelected

1 to 16 of 16 Structures

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1Q1Y \| pdb_00001q1y	Download File View File

Crystal Structures of Peptide Deformylase from Staphylococcus aureus Complexed with Actinonin

Yoon, H.J., Lee, S.K., Kim, H.L., Kim, H.W., Kim, H.W., Lee, J.Y., Mikami, B., Suh, S.W.

(2004) Proteins 57: 639-642

Released	2004-07-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus
Macromolecule	Peptide deformylase (protein)
Unique Ligands	BB2, ZN

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1TX6 \| pdb_00001tx6	Download File View File

trypsin:BBI complex

Song, H.K., Park, E.Y., Kim, J.A., Kim, H.W., Kim, Y.S.

(2004) J Mol Biology 343: 173-186

Released	2005-03-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Hordeum vulgare Sus scrofa
Macromolecule	Bowman-Birk type trypsin inhibitor (protein) Trypsin (protein)
Unique Ligands	CA

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2DS8 \| pdb_00002ds8	Download File View File

Structure of the ZBD-XB complex

Park, E.Y., Lee, B.G., Hong, S.B., Kim, H.W., Song, H.K.

(2007) J Mol Biology 367: 514-526

Released	2007-02-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent Clp protease ATP-binding subunit clpX (protein) SspB-tail peptide (protein)
Unique Ligands	ZN

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5JCI \| pdb_00005jci	Download File View File

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica

Park, A.K., Kim, H.W.

(2016) Sci Rep 6: 33903-33903

Released	2016-10-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Os09g0567300 protein (protein)
Unique Ligands	FAD

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5JCK \| pdb_00005jck	Download File View File

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica

Park, A.K., Kim, H.W.

Sci Rep 6: 33903-33903

Released	2016-10-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Os09g0567300 protein (protein)
Unique Ligands	FAD, NAD

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5JCL \| pdb_00005jcl	Download File View File

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica

Park, A.K., Kim, H.W.

(2016) Sci Rep 6: 33903-33903

Released	2016-10-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Os09g0567300 protein (protein)
Unique Ligands	FAD, NDP

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5JCM \| pdb_00005jcm	Download File View File

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica

Park, A.K., Kim, H.W.

(2016) Sci Rep 6: 33903-33903

Released	2016-10-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Os09g0567300 protein (protein)
Unique Ligands	FAD, ISD, NAD

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5JCN \| pdb_00005jcn	Download File View File

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica

Park, A.K., Kim, H.W.

(2016) Sci Rep 6: 33903-33903

Released	2016-10-12
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Os09g0567300 protein (protein)
Unique Ligands	ASC, FAD, NAD

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6KRT \| pdb_00006krt	Download File View File

monodehydroascorbate reductase, MDHAR, from Antarctic hairgrass Deschampsia antarctica

Park, A.K., Do, H., Lee, J.H., Kim, H., Choi, W., Kim, I.S., Kim, H.W.

To be published

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Deschampsia antarctica
Macromolecule	monodehydroascorbate reductase (protein)
Unique Ligands	FAD

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6MW5 \| pdb_00006mw5	Download File View File

UDP-galactose:glucoside-Skp1 alpha-D-galactosyltransferase with bound UDP and Platinum

Kim, H.W., Wood, Z.A., West, C.M.

(2020) J Biological Chem 295: 9223-9243

Released	2019-10-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Globisporangium ultimum
Macromolecule	UDP-galactose:glucoside-Skp1 alpha-D-galactosyltransferase (protein)
Unique Ligands	EDO, PT, UDP

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6MW8 \| pdb_00006mw8	Download File View File

UDP-galactose:glucoside-Skp1 alpha-D-galactosyltransferase with bound UDP and Manganese

Kim, H.W., Wood, Z.A., West, C.M.

(2020) J Biological Chem 295: 9223-9243

Released	2019-10-09
Method	X-RAY DIFFRACTION 1.756 Å
Organisms	Globisporangium ultimum
Macromolecule	UDP-galactose:glucoside-Skp1 alpha-D-galactosyltransferase (protein)
Unique Ligands	ACT, EDO, MN, UDP

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6V88 \| pdb_00006v88	Download File View File

Solution NMR structure of Dictyostelium discoideum Skp1A (truncated) dimer

Kim, H.W., Eletsky, A., West, C.M.

(2020) Biochemistry 59: 1527-1536

Released	2020-04-15
Method	SOLUTION NMR
Organisms	Dictyostelium discoideum
Macromolecule	SCF ubiquitin ligase complex protein SKP1a (protein)

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7V8U \| pdb_00007v8u	Download File View File

Crystal structure of PsEst3 wild-type

Son, J., Kim, H., Kim, H.W.

(2023) IUCrJ 10: 220-232

Released	2022-08-31
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Paenibacillus sp.
Macromolecule	Esterase (protein)
Unique Ligands	NBZ, SO4

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7V8V \| pdb_00007v8v	Download File View File

Crystal structure of PsEst3 S128A mutant

Son, J., Kim, H., Kim, H.W.

(2023) IUCrJ 10: 220-232

Released	2022-08-31
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Paenibacillus sp.
Macromolecule	esterase (protein)

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7V8W \| pdb_00007v8w	Download File View File

Crystal structure of PsEst3 S128A variant complexed with malonate

Son, J., Kim, H., Kim, H.W.

(2023) IUCrJ 10: 220-232

Released	2022-08-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Paenibacillus sp.
Macromolecule	esterase (protein)
Unique Ligands	ACT, EDO, MLA

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7V8X \| pdb_00007v8x	Download File View File

Crystal structure of PsEst3 complexed with Phenylmethylsulfonyl fluoride (PMSF)

Son, J., Kim, H., Kim, H.W.

(2023) IUCrJ 10: 220-232

Released	2022-08-31
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Paenibacillus sp.
Macromolecule	esterase (protein)
Unique Ligands	PMS

1 to 16 of 16 Structures

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1Q1Y | pdb_00001q1y

Crystal Structures of Peptide Deformylase from Staphylococcus aureus Complexed with Actinonin

1TX6 | pdb_00001tx6

trypsin:BBI complex

2DS8 | pdb_00002ds8

Structure of the ZBD-XB complex

5JCI | pdb_00005jci

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica

5JCK | pdb_00005jck

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica

5JCL | pdb_00005jcl

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica

5JCM | pdb_00005jcm

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica

5JCN | pdb_00005jcn

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica

6KRT | pdb_00006krt

monodehydroascorbate reductase, MDHAR, from Antarctic hairgrass Deschampsia antarctica

6MW5 | pdb_00006mw5

UDP-galactose:glucoside-Skp1 alpha-D-galactosyltransferase with bound UDP and Platinum

6MW8 | pdb_00006mw8

UDP-galactose:glucoside-Skp1 alpha-D-galactosyltransferase with bound UDP and Manganese

6V88 | pdb_00006v88

Solution NMR structure of Dictyostelium discoideum Skp1A (truncated) dimer

7V8U | pdb_00007v8u

Crystal structure of PsEst3 wild-type

7V8V | pdb_00007v8v

Crystal structure of PsEst3 S128A mutant

7V8W | pdb_00007v8w

Crystal structure of PsEst3 S128A variant complexed with malonate

7V8X | pdb_00007v8x

Crystal structure of PsEst3 complexed with Phenylmethylsulfonyl fluoride (PMSF)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1Q1Y | pdb_00001q1y

1TX6 | pdb_00001tx6

2DS8 | pdb_00002ds8

5JCI | pdb_00005jci

5JCK | pdb_00005jck

5JCL | pdb_00005jcl

5JCM | pdb_00005jcm

5JCN | pdb_00005jcn

6KRT | pdb_00006krt

6MW5 | pdb_00006mw5

6MW8 | pdb_00006mw8

6V88 | pdb_00006v88

7V8U | pdb_00007v8u

7V8V | pdb_00007v8v

7V8W | pdb_00007v8w

7V8X | pdb_00007v8x