RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Levy, C."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 127 Structures.

Refinements

Structure Determination Methodology

experimental (127)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (24)
	Mycobacterium tuberculosis (20)
	Homo sapiens (15)
	Gallus gallus (13)
	Saccharomyces cerevisiae S288C (7)
	Desulfitobacterium hafniense DCB-2 (6)
	Staphylococcus aureus (6)
	synthetic construct (4)
	Jeotgalicoccus sp. ATCC 8456 (3)
	Mycobacterium tuberculosis CDC1551 (3)

More...

Taxonomy

	Bacteria (79)
	Eukaryota (40)
	Duplodnaviria (5)
	other sequences (4)

Experimental Method

	X-RAY DIFFRACTION (126)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (127)
	DNA (3)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (62)
	2.0 - 2.5 (37)
	2.5 - 3.0 (11)
	3.0 - 3.5 (4)

Release Date

	1995 - 1999 (1)
	2005 - 2009 (20)
	2010 - 2014 (20)
	2015 - 2019 (34)
	2020 - 2024 (49)
	2025 - 2029 (3)

Enzyme Classification Name

	Oxidoreductases (69)
	Hydrolases (27)
	Transferases (6)
	Lyases (3)

Symmetry Type

	Asymmetric (104)
	Cyclic (19)
	Dihedral (5)

SCOP Classification

	All alpha proteins (40)
	All beta proteins (7)
	Alpha and beta proteins (a+b) (13)
	Alpha and beta proteins (a/b) (9)
	Artifacts (7)

AllSelected

1 to 25 of 127 Structures

Page 1 of 6

Sort by

Explore in 3D

1D7O \| pdb_00001d7o	Download File View File

CRYSTAL STRUCTURE OF BRASSICA NAPUS ENOYL ACYL CARRIER PROTEIN REDUCTASE COMPLEXED WITH NAD AND TRICLOSAN

Roujeinikova, A., Levy, C., Rowsell, S., Sedelnikova, S., Baker, P.J., Minshull, C.A., Mistry, A., Colls, J.G., Camble, R., Stuitje, A.R., Slabas, A.R., Rafferty, J.B., Pauptit, R.A., Viner, R., Rice, D.W.

(1999) J Mol Biology 294: 527-535

Released	1999-11-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Brassica napus
Macromolecule	ENOYL-[ACYL-CARRIER PROTEIN] REDUCTASE (NADH) PRECURSOR (protein)
Unique Ligands	NAD, TCL

Explore in 3D

2CG8 \| pdb_00002cg8	Download File View File

The bifunctional dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase from Streptococcus pneumoniae

Garcon, A., Levy, C., Derrick, J.P.

(2006) J Mol Biology 360: 644

Released	2006-06-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Streptococcus pneumoniae
Macromolecule	DIHYDRONEOPTERIN ALDOLASE 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN SYNTHASE (protein)

Explore in 3D

2H6B \| pdb_00002h6b	Download File View File

Crystal structure of oxidized CprK in complex with o-chlorophenolacetic acid

Joyce, M.G., Levy, C., Leys, D.

(2006) J Biological Chem 281: 28318-28325

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Desulfitobacterium hafniense
Macromolecule	ChloroPhenol Reduction gene K (protein)
Unique Ligands	3C4, SO4

Explore in 3D

2H6C \| pdb_00002h6c	Download File View File

Crystal structure of reduced CprK in absence of any ligand

Levy, C., Leys, D.

(2006) J Biological Chem 281: 28318-28325

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Desulfitobacterium dehalogenans
Macromolecule	ChloroPhenol Reduction gene K (protein)

Explore in 3D

2VEF \| pdb_00002vef	Download File View File

Dihydropteroate synthase from Streptococcus pneumoniae

Derrick, J.P., Levy, C.

(2008) Biochem J 412: 379

Released	2008-03-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus pneumoniae
Macromolecule	DIHYDROPTEROATE SYNTHASE (protein)
Unique Ligands	PO4

Explore in 3D

2VEG \| pdb_00002veg	Download File View File

Dihydropteroate synthase from Streptococcus pneumoniae: complex with 6-hydroxymethyl-7,8-dihydropterin monophosphate

Derrick, J., Levy, C.

(2008) Biochem J 412: 379

Released	2008-03-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus pneumoniae
Macromolecule	DIHYDROPTEROATE SYNTHASE (protein)
Unique Ligands	PMM, PO4

Explore in 3D

3DG9 \| pdb_00003dg9	Download File View File

Crystal Structure of Malonate Decarboxylase from Bordatella bronchiseptica

Okrasa, K., Levy, C., Baudendistel, N., Leys, D., Micklefield, J.

(2008) Chemistry 14: 6609-6613

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bordetella bronchiseptica
Macromolecule	Arylmalonate decarboxylase (protein)
Unique Ligands	PO4

Explore in 3D

3E5Q \| pdb_00003e5q	Download File View File

Unbound Oxidised CprK

Levy, C.

(2008) Mol Microbiol 70: 151-167

Released	2008-09-30
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Desulfitobacterium hafniense DCB-2
Macromolecule	Cyclic nucleotide-binding protein (protein)

Explore in 3D

3E5U \| pdb_00003e5u	Download File View File

OCPA complexed CprK (C200S)

Levy, C.

(2008) Mol Microbiol 70: 151-167

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Desulfitobacterium hafniense DCB-2
Macromolecule	Cyclic nucleotide-binding protein (protein)
Unique Ligands	3C4, NA, PO4

Explore in 3D

3E5X \| pdb_00003e5x	Download File View File

OCPA complexed CprK

Levy, C.

(2008) Mol Microbiol 70: 151-167

Released	2008-12-09
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Desulfitobacterium hafniense DCB-2
Macromolecule	Cyclic nucleotide-binding protein (protein)
Unique Ligands	3C4

Explore in 3D

3E6B \| pdb_00003e6b	Download File View File

OCPA complexed CprK (C200S)

Levy, C.

(2008) Mol Microbiol 70: 151-167

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Desulfitobacterium hafniense DCB-2
Macromolecule	Cyclic nucleotide-binding protein (protein)
Unique Ligands	3C4

Explore in 3D

3E6C \| pdb_00003e6c	Download File View File

CprK OCPA DNA Complex

Levy, C.

(2008) Mol Microbiol 70: 151-167

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Desulfitobacterium hafniense DCB-2
Macromolecule	Cyclic nucleotide-binding protein (protein) DNA (5'-D(PDGPDCPDAPDTPDTPDAPDAPDCPDAPDTPDGPDCPDC)-3') (nucleic acid) DNA (5'-D(PDGPDGPDCPDAPDTPDGPDTPDTPDAPDAPDTPDGPDC)-3') (nucleic acid)
Unique Ligands	3C4

Explore in 3D

3E6D \| pdb_00003e6d	Download File View File

Crystal Structure of CprK C200S

Levy, C.

(2008) Mol Microbiol 70: 151-167

Released	2008-09-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Desulfitobacterium hafniense DCB-2
Macromolecule	Cyclic nucleotide-binding protein (protein)

Explore in 3D

3GSI \| pdb_00003gsi	Download File View File

Crystal structure of D552A dimethylglycine oxidase mutant of Arthrobacter globiformis in complex with tetrahydrofolate

Tralau, T., Lafite, P., Levy, C., Combe, J.P., Scrutton, N.S., Leys, D.

(2009) J Biological Chem 284: 17826-17834

Released	2009-04-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arthrobacter globiformis
Macromolecule	N,N-dimethylglycine oxidase (protein)
Unique Ligands	FAD, MG, THG

Explore in 3D

3IA4 \| pdb_00003ia4	Download File View File

Moritella profunda dihydrofolate reductase (DHFR) in complex with NADPH and methotrexate (MTX)

Levy, C.

(2009) Chembiochem 10: 2348-2353

Released	2009-07-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Moritella profunda
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	MTX, NDP

Explore in 3D

3IA5 \| pdb_00003ia5	Download File View File

Moritella profunda dihydrofolate reductase (DHFR)

Hay, S., Evans, R.M., Levy, C., Wang, X., Loveridge, E.J., Leys, D., Allemann, R.K., Scrutton, N.S.

(2009) Chembiochem 10: 2348-2353

Released	2009-07-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Moritella profunda
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	PO4

Explore in 3D

3IP8 \| pdb_00003ip8	Download File View File

Crystal structure of arylmalonate decarboxylase (AMDase) from Bordatella bronchiseptic in complex with benzylphosphonate

Okrasa, K., Levy, C., Leys, D., Micklefield, J.

(2009) Angew Chem Int Ed Engl 48: 7691-7694

Released	2009-10-06
Method	X-RAY DIFFRACTION 1.498 Å
Organisms	Bordetella bronchiseptica
Macromolecule	Arylmalonate decarboxylase (protein)
Unique Ligands	B85

Explore in 3D

3IVY \| pdb_00003ivy	Download File View File

Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP125, p212121 crystal form

McLean, K.J., Levy, C., Munro, A.W., Leys, D.

(2009) J Biological Chem 284: 35524-35533

Released	2009-11-03
Method	X-RAY DIFFRACTION 1.352 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Cytochrome P450 CYP125 (protein)
Unique Ligands	HEM

Explore in 3D

3IW0 \| pdb_00003iw0	Download File View File

Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP125, C2221 crystal form

McLean, K.J., Levy, C., Munro, A.W., Leys, D.

(2009) J Biological Chem 284: 35524-35533

Released	2009-11-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Cytochrome P450 CYP125 (protein)
Unique Ligands	HEM, PO4

Explore in 3D

3IW1 \| pdb_00003iw1	Download File View File

Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP125 in complex with androstenedione

McLean, K.J., Levy, C., Munro, A.W., Leys, D.

(2009) J Biological Chem 284: 35524-35533

Released	2009-11-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Cytochrome P450 CYP125 (protein)
Unique Ligands	ASD, HEM

Explore in 3D

3IW2 \| pdb_00003iw2	Download File View File

Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP125 in complex with econazole

McLean, K.J., Levy, C., Munro, A.W., Leys, D.

(2009) J Biological Chem 284: 35524-35533

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Cytochrome P450 CYP125 (protein)
Unique Ligands	EKO, HEM