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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Li, C."

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Search Summary

This query matches 1,008 Structures.

Refinements

Structure Determination Methodology

experimental (1,008)

Scientific Name of Source Organism

	Homo sapiens (544)
	Mus musculus (61)
	Escherichia coli (45)
	Escherichia coli K-12 (33)
	Rattus norvegicus (22)
	synthetic construct (20)
	Saccharomyces cerevisiae S288C (17)
	Bos taurus (16)
	Gallus gallus (14)
	Escherichia coli O157:H7 (12)

More...

Taxonomy

	Eukaryota (700)
	Bacteria (272)
	Riboviria (44)
	other sequences (20)
	Duplodnaviria (16)
	Archaea (12)
	Eukaryota (eukaryotes) (11)
	Monodnaviria (6)
	environmental samples (5)
	Varidnaviria (4)

More...

Experimental Method

	X-RAY DIFFRACTION (779)
	ELECTRON MICROSCOPY (179)
	SOLUTION NMR (49)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (1,004)
	DNA (40)
	RNA (39)

Refinement Resolution (Å)

	1.0 - 1.5 (58)
	1.5 - 2.0 (252)
	2.0 - 2.5 (266)
	2.5 - 3.0 (210)
	3.0 - 3.5 (96)
	3.5 - 4.0 (44)
	4.0 - 4.5 (20)
	> 4.5 (13)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (5)
	1995 - 1999 (13)
	2000 - 2004 (63)
	2005 - 2009 (158)
	2010 - 2014 (191)
	2015 - 2019 (182)
	2020 - 2024 (361)
	2025 - 2029 (34)

Enzyme Classification Name

	Transferases (251)
	Hydrolases (165)
	Oxidoreductases (49)
	Ligases (45)
	Translocases (18)
	Lyases (40)
	Isomerases (8)

Membrane Protein Annotation

	PDBTM (88)
	MemProtMD (61)
	mpstruc (53)
	OPM (45)

Symmetry Type

	Asymmetric (728)
	Cyclic (243)
	Dihedral (53)
	Helical (15)
	Tetrahedral (2)
	Icosahedral (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (138)
	All beta proteins (127)
	Alpha and beta proteins (a+b) (112)
	Artifacts (66)
	All alpha proteins (59)
	Membrane and cell surface proteins and peptides (16)
	Coiled coil proteins (6)
	Multi-domain proteins (alpha and beta) (21)
	Small proteins (12)
	Peptides (3)

AllSelected

1 to 25 of 1,008 Structures

Page 1 of 41

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1A4I \| pdb_00001a4i	Download File View File

HUMAN TETRAHYDROFOLATE DEHYDROGENASE / CYCLOHYDROLASE

Allaire, M., Li, Y., Mackenzie, R.E., Cygler, M.

(1998) Structure 6: 173-182

Released	1999-02-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	METHYLENETETRAHYDROFOLATE DEHYDROGENASE / METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE (protein)
Unique Ligands	NDP

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1APH \| pdb_00001aph	Download File View File

CONFORMATIONAL CHANGES IN CUBIC INSULIN CRYSTALS IN THE PH RANGE 7-11

Gursky, O., Badger, J., Li, Y., Caspar, D.L.D.

(1992) Biophys J 63: 1210-1220

Released	1993-01-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	INSULIN A CHAIN (PH 7) (protein) INSULIN B CHAIN (PH 7) (protein)
Unique Ligands	DCE

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1BLR \| pdb_00001blr	Download File View File

NMR SOLUTION STRUCTURE OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEIN-TYPE II, 22 STRUCTURES

Wang, L., Li, Y., Abilddard, F., Yan, H., Markely, J.

(1998) Biochemistry 37: 12727-12736

Released	1999-01-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CELLULAR RETINOIC ACID BINDING PROTEIN-TYPE II (protein)

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1BM6 \| pdb_00001bm6	Download File View File

SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN STROMELYSIN-1 COMPLEXED TO A POTENT NON-PEPTIDIC INHIBITOR, NMR, 20 STRUCTURES

Li, Y., Zhang, X., Melton, R., Ganu, V., Gonnella, N.C.

(1998) Biochemistry 37: 14048-14056

Released	1999-07-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	STROMELYSIN-1 (protein)
Unique Ligands	3MP, CA, HAV, MSB, ZN

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1BMV \| pdb_00001bmv	Download File View File

PROTEIN-RNA INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION

Chen, Z., Stauffacher, C., Li, Y., Schmidt, T., Bomu, W., Kamer, G., Shanks, M., Lomonossoff, G., Johnson, J.E.

(1989) Science 245: 154-159

Released	1989-10-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bean pod mottle virus
Macromolecule	PROTEIN (ICOSAHEDRAL VIRUS - A DOMAIN) (protein) PROTEIN (ICOSAHEDRAL VIRUS - B AND C DOMAIN) (protein) RNA (5'-R(GPGPUPCPAPAPAPAPUPGP*C)-3') (nucleic acid)

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1BNL \| pdb_00001bnl	Download File View File

ZINC DEPENDENT DIMERS OBSERVED IN CRYSTALS OF HUMAN ENDOSTATIN

Ding, Y.-H., Javaherian, K., Lo, K.-M., Chopra, R., Boehm, T., Lanciotti, J., Harris, B.A., Li, Y., Shapiro, R., Hohenester, E., Timpl, R., Folkman, J., Wiley, D.C.

(1998) Proc Natl Acad Sci U S A 95: 10443-10448

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	COLLAGEN XVIII (protein)
Unique Ligands	ZN

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1BPH \| pdb_00001bph	Download File View File

CONFORMATIONAL CHANGES IN CUBIC INSULIN CRYSTALS IN THE PH RANGE 7-11

Gursky, O., Badger, J., Li, Y., Caspar, D.L.D.

(1992) Biophys J 63: 1210-1220

Released	1993-01-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	INSULIN A CHAIN (PH 9) (protein) INSULIN B CHAIN (PH 9) (protein)
Unique Ligands	DCE, NA

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1BVM \| pdb_00001bvm	Download File View File

SOLUTION NMR STRUCTURE OF BOVINE PANCREATIC PHOSPHOLIPASE A2, 20 STRUCTURES

Yuan, C.-H., Byeon, I.-J.L., Li, Y., Tsai, M.-D.

(1999) Biochemistry 38: 2909-2918

Released	1999-09-16
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	PROTEIN (PHOSPHOLIPASE A2) (protein)

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1C6V \| pdb_00001c6v	Download File View File

SIV INTEGRASE (CATALYTIC DOMAIN + DNA BIDING DOMAIN COMPRISING RESIDUES 50-293) MUTANT WITH PHE 185 REPLACED BY HIS (F185H)

Chen, Z., Yan, Y., Munshi, S., Li, Y., Zruygay-Murphy, J., Xu, B., Witmer, M., Felock, P., Wolfe, A., Sardana, V., Emini, E.A., Hazuda, D., Kuo, L.C.

(2000) J Mol Biology 296: 521-533

Released	2000-12-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Simian immunodeficiency virus
Macromolecule	PROTEIN (SIU89134) (protein) PROTEIN (SIV INTEGRASE) (protein)

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1CPH \| pdb_00001cph	Download File View File

CONFORMATIONAL CHANGES IN CUBIC INSULIN CRYSTALS IN THE PH RANGE 7-11

Gursky, O., Badger, J., Li, Y., Caspar, D.L.D.

(1992) Biophys J 63: 1210-1220

Released	1993-01-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	INSULIN (PH 10) (protein)
Unique Ligands	DCE, NA

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1DBG \| pdb_00001dbg	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B

Huang, W., Matte, A., Li, Y., Kim, Y.S., Linhardt, R.J., Su, H., Cygler, M.

(1999) J Mol Biology 294: 1257-1269

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE B (protein)
Unique branched monosaccharides	BGC, G4D, GCU, MAN, MXY, RAM, XYP

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1DBO \| pdb_00001dbo	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B

Huang, W., Matte, A., Li, Y., Kim, Y.S., Linhardt, R.J., Su, H., Cygler, M.

(1999) J Mol Biology 294: 1257-1269

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE B (protein)
Unique branched monosaccharides	ASG, BGC, G4D, GC4, GCU, MAN, MXY, RAM, XYP

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1DPH \| pdb_00001dph	Download File View File

CONFORMATIONAL CHANGES IN CUBIC INSULIN CRYSTALS IN THE PH RANGE 7-11

Gursky, O., Badger, J., Li, Y., Caspar, D.L.D.

(1992) Biophys J 63: 1210-1220

Released	1993-01-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	INSULIN A CHAIN (PH 11) (protein) INSULIN B CHAIN (PH 11) (protein)
Unique Ligands	DCE, NA

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1DTL \| pdb_00001dtl	Download File View File

CRYSTAL STRUCTURE OF CALCIUM-SATURATED (3CA2+) CARDIAC TROPONIN C COMPLEXED WITH THE CALCIUM SENSITIZER BEPRIDIL AT 2.15 A RESOLUTION

Li, Y., Love, M.L., Putkey, J.A., Cohen, C.

(2000) Proc Natl Acad Sci U S A 97: 5140-5145

Released	2000-05-12
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Gallus gallus
Macromolecule	CARDIAC TROPONIN C (protein)
Unique Ligands	BEP, CA

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1EOJ \| pdb_00001eoj	Download File View File

Design of P1' and P3' residues of trivalent thrombin inhibitors and their crystal structures

Slon-Usakiewicz, J.J., Sivaraman, J., Li, Y., Cygler, M., Konishi, Y.

(2000) Biochemistry 39: 2384-2391

Released	2000-05-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ALPHA THROMBIN (protein) THROMBIN INHIBITOR P798 (protein)

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1EOL \| pdb_00001eol	Download File View File

Design of P1' and P3' residues of trivalent thrombin inhibitors and their crystal structures

Slon-Usakiewicz, J.J., Sivaraman, J., Li, Y., Cygler, M., Konishi, Y.

(2000) Biochemistry 39: 2384-2391

Released	2000-05-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ALPHA THROMBIN (protein) THROMBIN INHIBITOR P628 (protein)

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1EPT \| pdb_00001ept	Download File View File

REFINED 1.8 ANGSTROMS RESOLUTION CRYSTAL STRUCTURE OF PORCINE EPSILON-TRYPSIN

Huang, Q., Wang, Z., Li, Y., Liu, S., Tang, Y.

(1994) Biochim Biophys Acta 1209: 77-82

Released	1995-02-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sus scrofa
Macromolecule	PORCINE E-TRYPSIN (protein)
Unique Ligands	CA

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1F1Z \| pdb_00001f1z	Download File View File

TNSA, a catalytic component of the TN7 transposition system

Hickman, A.B., Li, Y., Mathew, S.V., May, E.W., Craig, N.L., Dyda, F.

(2000) Mol Cell 5: 1025-1034

Released	2000-06-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	TNSA ENDONUCLEASE (protein)
Unique Ligands	CL, MG

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1F2E \| pdb_00001f2e	Download File View File

STRUCTURE OF SPHINGOMONAD, GLUTATHIONE S-TRANSFERASE COMPLEXED WITH GLUTATHIONE

Nishio, T., Watanabe, T., Patel, A., Wang, Y., Lau, P.C.K., Grochulski, P., Li, Y., Cygler, M.

To be published

Released	2000-06-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	GSH

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1FC4 \| pdb_00001fc4	Download File View File

2-AMINO-3-KETOBUTYRATE COA LIGASE

Schmidt, A., Matte, A., Li, Y., Sivaraman, J., Larocque, R., Schrag, J.D., Smith, C., Sauve, V., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2001) Biochemistry 40: 5151-5160

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	2-AMINO-3-KETOBUTYRATE CONENZYME A LIGASE (protein)
Unique Ligands	AKB, PLP

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1FV1 \| pdb_00001fv1	Download File View File

STRUCTURAL BASIS FOR THE BINDING OF AN IMMUNODOMINANT PEPTIDE FROM MYELIN BASIC PROTEIN IN DIFFERENT REGISTERS BY TWO HLA-DR2 ALLELES

Li, H., Mariuzza, A.R., Li, Y., Martin, R.

(2000) J Mol Biology 304: 177-188

Released	2000-09-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	MAJOR HISTOCOMPATIBILITY COMPLEX ALPHA CHAIN (protein) MAJOR HISTOCOMPATIBILITY COMPLEX BETA CHAIN (protein) MYELIN BASIC PROTEIN (protein)
Unique Ligands	GOL, SO4

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1G91 \| pdb_00001g91	Download File View File

SOLUTION STRUCTURE OF MYELOID PROGENITOR INHIBITORY FACTOR-1 (MPIF-1)

Rajarathnam, K., Li, Y., Rohrer, T., Gentz, R.

(2001) J Biological Chem 276: 4909-4916

Released	2001-03-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MYELOID PROGENITOR INHIBITORY FACTOR-1 (protein)

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1G9I \| pdb_00001g9i	Download File View File

CRYSTAL STRUCTURE OF BETA-TRYSIN COMPLEX IN CYCLOHEXANE

Zhu, G., Huang, Q., Zhu, Y., Li, Y., Chi, C., Tang, Y.

(2001) Biochim Biophys Acta 1546: 98-106

Released	2000-12-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus Vigna radiata var. radiata
Macromolecule	BOWMAN-BIRK TYPE TRYPSIN INHIBITOR (protein) TRYPSINOGEN, CATIONIC (protein)
Unique Ligands	CA, SO4

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1HQR \| pdb_00001hqr	Download File View File

CRYSTAL STRUCTURE OF A SUPERANTIGEN BOUND TO THE HIGH-AFFINITY, ZINC-DEPENDENT SITE ON MHC CLASS II

Li, Y., Li, H., Dimasi, N., Schlievert, P., Mariuzza, R.

(2001) Immunity 14: 93-104

Released	2001-01-03
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Streptococcus pyogenes
Macromolecule	HLA-DR ALPHA CHAIN (protein) HLA-DR BETA CHAIN (protein) MYELIN BASIC PROTEIN (protein) STREPTOCOCCAL PYROGENIC EXOTOXIN C (protein)
Unique Ligands	ZN