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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Li, Z."

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Search Summary

This query matches 463 Structures.

Refinements

Structure Determination Methodology

experimental (463)

Scientific Name of Source Organism

	Homo sapiens (153)
	Severe acute respiratory syndrome coronavirus 2 (52)
	synthetic construct (40)
	Mus musculus (21)
	Enterobacteria phage T6 (11)
	Paenibacillus sp. 453mf (10)
	Severe acute respiratory syndrome coronavirus (10)
	Thogoto virus (isolate SiAr 126) (10)
	Escherichia coli (9)
	Human betaherpesvirus 5 (9)

More...

Taxonomy

	Eukaryota (239)
	Bacteria (131)
	Riboviria (99)
	other sequences (40)
	Duplodnaviria (28)
	unclassified sequences (9)
	Viruses incertae sedis (4)
	Archaea (2)
	Monodnaviria (2)
	Riboviria (RNA viruses and viroids) (2)

More...

Experimental Method

	ELECTRON MICROSCOPY (232)
	X-RAY DIFFRACTION (220)
	SOLUTION NMR (10)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (457)
	RNA (65)
	DNA (27)
	NA-hybrid (4)

Refinement Resolution (Å)

	1.0 - 1.5 (21)
	1.5 - 2.0 (64)
	2.0 - 2.5 (67)
	2.5 - 3.0 (96)
	3.0 - 3.5 (87)
	3.5 - 4.0 (54)
	4.0 - 4.5 (31)
	> 4.5 (33)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (13)
	2005 - 2009 (14)
	2010 - 2014 (48)
	2015 - 2019 (114)
	2020 - 2024 (269)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (71)
	Hydrolases (74)
	Oxidoreductases (26)
	Ligases (9)
	Isomerases (7)
	Lyases (3)

Membrane Protein Annotation

	PDBTM (45)
	MemProtMD (32)
	OPM (23)
	mpstruc (23)

Symmetry Type

	Asymmetric (306)
	Cyclic (122)
	Dihedral (26)
	Helical (5)
	Icosahedral (4)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (27)
	Alpha and beta proteins (a/b) (18)
	All alpha proteins (23)
	Alpha and beta proteins (a+b) (23)
	Artifacts (14)
	Small proteins (10)
	Multi-domain proteins (alpha and beta) (7)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 463 Structures

Page 1 of 19

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1DBU \| pdb_00001dbu	Download File View File

Crystal structure of cysteinyl-tRNA(Pro) deacylase protein from H. influenzae (HI1434)

Zhang, H., Huang, K., Li, Z., Herzberg, O., Structure 2 Function Project (S2F)

(2000) Proteins 40: 86-97

Released	2000-06-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	cysteinyl-tRNA(Pro) deacylase (protein)
Unique Ligands	HG

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1DBX \| pdb_00001dbx	Download File View File

Crystal structure of cysteinyl-tRNA(Pro) deacylase from H. influenzae (HI1434)

Zhang, H., Huang, K., Li, Z., Herzberg, O., Structure 2 Function Project (S2F)

(2000) Proteins 40: 86-97

Released	2000-06-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	cysteinyl-tRNA(Pro) deacylase (protein)

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1DJD \| pdb_00001djd	Download File View File

THE SOLUTION STRUCTURE OF A NON-BAY REGION 11R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Kim, H.Y., Tamura, P.J., Harris, C.M., Harris, T.M., Stone, M.P.

(1999) Biochemistry 38: 14820-14832

Released	1999-12-16
Method	SOLUTION NMR
Macromolecule	DNA(5'-D(CTGTGTATCTATATGTATATG)-3') (nucleic acid) DNA(5'-D(CTTTTTCTTTTTGTTTCTCTG)-3') (nucleic acid)
Unique Ligands	TBT

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1DL4 \| pdb_00001dl4	Download File View File

THE SOLUTION STRUCTURE OF A BAY-REGION 1S-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Kim, H.-Y., Tamura, P.J., Harris, C.M., Harris, T.M., Stone, M.P.

(1999) Biochemistry 38: 16045-16057

Released	2000-01-12
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCP(BZA)APAPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)
Unique Ligands	BZA

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1FJ4 \| pdb_00001fj4	Download File View File

THE STRUCTURE OF BETA-KETOACYL-[ACYL CARRIER PROTEIN] SYNTHASE I IN COMPLEX WITH THIOLACTOMYCIN, IMPLICATIONS FOR DRUG DESIGN

Price, A.C., Choi, K., Heath, R.J., Li, Z., White, S.W., Rock, C.O.

(2001) J Biological Chem 276: 6551-6559

Released	2000-08-23
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli
Macromolecule	BETA-KETOACYL-[ACYL CARRIER PROTEIN] SYNTHASE I (protein)
Unique Ligands	TLM

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1FJ8 \| pdb_00001fj8	Download File View File

THE STRUCTURE OF BETA-KETOACYL-[ACYL CARRIER PROTEIN] SYNTHASE I IN COMPLEX WITH CERULENIN, IMPLICATIONS FOR DRUG DESIGN

Price, A.C., Choi, K., Heath, R.J., Li, Z., White, S.W., Rock, C.O.

(2001) J Biological Chem 276: 6551-6559

Released	2000-08-23
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Escherichia coli
Macromolecule	BETA-KETOACYL-[ACYL CARRIER PROTEIN] SYNTHASE I (protein)
Unique Ligands	CER

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1GGO \| pdb_00001ggo	Download File View File

T453A MUTANT OF PYRUVATE, PHOSPHATE DIKINASE

Li, Z., Herzberg, O.

(2000) J Biological Chem 275: 41156-41165

Released	2001-01-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PROTEIN (PYRUVATE, PHOSPHATE DIKINASE) (protein)
Unique Ligands	SO4

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1HW1 \| pdb_00001hw1	Download File View File

THE FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM IN ESCHERICHIA COLI

Xu, Y., Heath, R.J., Li, Z., Rock, C.O., White, S.W.

(2001) J Biological Chem 276: 17373-17379

Released	2001-01-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	FATTY ACID METABOLISM REGULATOR PROTEIN (protein)
Unique Ligands	SO4, ZN

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1HW2 \| pdb_00001hw2	Download File View File

FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM IN ECHERICHIA COLI

Xu, Y., Heath, R.J., Li, Z., Rock, C.O., White, S.W.

(2001) J Biological Chem 276: 17373-17379

Released	2001-01-22
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Escherichia coli
Macromolecule	FATTY ACID METABOLISM REGULATOR PROTEIN (protein) 5'-D(CPGPAPTPCPTPGPGPTPCPCPGPAPCPCPAPGPAPTPGPCPT)-3' (nucleic acid) 5'-D(GCPAPTPCPTPGPGPTPCPGPGPAPCPCPAPGPAPTPCPGPA)-3' (nucleic acid)
Unique Ligands	MG

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1I7V \| pdb_00001i7v	Download File View File

THE SOLUTION STRUCTURE OF A BAY REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Tamura, P.J., Wilkinson, A.S., Harris, C.M., Harris, T.M., Stone, M.P.

(2001) Biochemistry 40: 6743-6755

Released	2001-03-28
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCPAP(BZA)APGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCPG)-3' (nucleic acid)
Unique Ligands	BZA

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1M62 \| pdb_00001m62	Download File View File

Solution structure of the BAG domain from BAG4/SODD

Briknarova, K., Takayama, S., Homma, S., Baker, K., Cabezas, E., Hoyt, D.W., Li, Z., Satterthwait, A.C., Ely, K.R.

(2002) J Biological Chem 277: 31172-31178

Released	2002-07-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	BAG-family molecular chaperone regulator-4 (protein)

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1PYM \| pdb_00001pym	Download File View File

PHOSPHOENOLPYRUVATE MUTASE FROM MOLLUSK IN WITH BOUND MG2-OXALATE

Huang, K., Li, Z., Herzberg, O.

(1999) Structure 7: 539-548

Released	1999-07-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mytilus edulis
Macromolecule	PROTEIN (PHOSPHOENOLPYRUVATE MUTASE) (protein)
Unique Ligands	MG, OXL

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1QBY \| pdb_00001qby	Download File View File

THE SOLUTION STRUCTURE OF A BAY-REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Mao, H., Kim, H.-Y., Tamura, P.J., Harris, C.M., Harris, T.M., Stone, M.P.

(1999) Biochemistry 38: 2969-2981

Released	1999-05-06
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCP(BZA)APAPGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCP G)-3' (nucleic acid)
Unique Ligands	BZA

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1R5I \| pdb_00001r5i	Download File View File

Crystal structure of the MAM-MHC complex

Zhao, Y., Li, Z., Drozd, S.J., Guo, Y., Mourad, W., Li, H.

(2004) Structure 12: 277-288

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Influenza A virus (strain A/Swine/Hong Kong/81/1978 H3N2) Metamycoplasma arthritidis
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-1 beta chain (protein) Hemagglutinin peptide (protein) superantigen (protein)
Unique Ligands	PO4

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1T2T \| pdb_00001t2t	Download File View File

Crystal structure of the DNA-binding domain of intron endonuclease I-TevI with operator site

Edgell, D.R., Derbyshire, V., Van Roey, P., LaBonne, S., Stanger, M.J., Li, Z., Boyd, T.M., Shub, D.A., Belfort, M.

(2004) Nat Struct Mol Biol 11: 936-944

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Tequatrovirus T4
Macromolecule	Intron-associated endonuclease 1 (protein) 5'-D(APAPTPTPAPAPAPGPGPGPCPAPGPTPCPCPTPAPCPAPA)-3' (nucleic acid) 5'-D(TPTPTPGPTPAPGPGPAPCPTPGPCPCPCPTPTPTPAPAPT)-3' (nucleic acid)
Unique Ligands	ZN

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1TVI \| pdb_00001tvi	Download File View File

Solution structure of TM1509 from Thermotoga maritima: VT1, a NESGC target protein

Penhoat, C.H., Atreya, H.S., Kim, S., Li, Z., Yee, A., Xiao, R., Murray, D., Arrowsmith, C.H., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2005) J Struct Funct Genomics 6: 51-62

Released	2005-01-04
Method	SOLUTION NMR
Organisms	Thermotoga maritima
Macromolecule	Hypothetical UPF0054 protein TM1509 (protein)

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1ULW \| pdb_00001ulw	Download File View File

Crystal structure of P450nor Ser73Gly/Ser75Gly mutant

Oshima, R., Fushinobu, S., Su, F., Li, Z., Takaya, N., Shoun, H.

(2004) J Mol Biology 342: 207-217

Released	2004-10-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Fusarium oxysporum
Macromolecule	Cytochrome P450 55A1 (protein)
Unique Ligands	HEM

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1YW5 \| pdb_00001yw5	Download File View File

Peptidyl-prolyl isomerase ESS1 from Candida albicans

Li, Z., Li, H., Devasahayam, G., Gemmill, T., Chaturvedi, V., Hanes, S.D., Van Roey, P.

(2005) Biochemistry 44: 6180-6189

Released	2005-04-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Candida albicans
Macromolecule	peptidyl prolyl cis/trans isomerase (protein)

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2AXH \| pdb_00002axh	Download File View File

Crystal structures of T cell receptor beta chains related to rheumatoid arthritis

Li, H., Van Vranken, S., Zhao, Y., Li, Z., Guo, Y., Eisele, L., Li, Y.

(2005) Protein Sci 14: 3025-3038

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	T cell receptor beta chain (protein)

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2AXJ \| pdb_00002axj	Download File View File

Crystal structures of T cell receptor beta chains related to rheumatoid arthritis

Li, H., Van Vranken, S., Zhao, Y., Li, Z., Guo, Y., Eisele, L., Li, Y.

(2005) Protein Sci 14: 3025-3038

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	SF4 T cell receptor beta chain (protein)

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2MAY \| pdb_00002may	Download File View File

Structure of a G-quadruplex containing a single LNA modification

Lech, C., Heddi, B., Adrian, M., Li, Z., Phan, A.T.

To be published

Released	2015-02-04
Method	SOLUTION NMR
Macromolecule	DNA_(5'-D(TPTPGPLGPGPTPTPAPGPGPGPTPTPAPGPGPGPTPTPAPGPGPGPA)-3') (nucleic acid)

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2N96 \| pdb_00002n96	Download File View File

An unexpected mode of small molecule DNA binding provides the structural basis for DNA cleavage by the potent antiproliferative agent (-)-lomaiviticin A

Woo, C.M., Li, Z., Paulson, E., Herzon, S.B.

(2016) Proc Natl Acad Sci U S A 113: 2851-2856

Released	2016-06-01
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPCPTPAPTPAPGPC)-3') (nucleic acid)
Unique Ligands	4JF

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2OJE \| pdb_00002oje	Download File View File

Mycoplasma arthritidis-derived mitogen complexed with class II MHC molecule HLA-DR1/HA complex in the presence of EDTA

Li, H., Zhao, Y., Guo, Y., Li, Z., Eisele, L., Mourad, W.

(2007) J Biological Chem 282: 5991-6000

Released	2007-01-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Influenza A virus Metamycoplasma arthritidis
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain precursor (protein) HLA class II histocompatibility antigen, DRB1-1 beta chain precursor (protein) Superantigen (protein) haemagglutinin peptide 306-318 (protein)
Unique Ligands	PO4

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2PY2 \| pdb_00002py2	Download File View File

Structure of Herring Type II Antifreeze Protein

Liu, Y., Li, Z., Lin, Q., Seetharaman, J., Sivaraman, J., Hew, C.-L.

(2007) PLoS One 2: e548-e548

Released	2007-06-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Clupea harengus
Macromolecule	Antifreeze protein type II (protein)
Unique Ligands	CA

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2QC3 \| pdb_00002qc3	Download File View File

Crystal structure of MCAT from Mycobacterium tuberculosis

Li, Z., Huang, Y., Ge, J., Bartlam, M., Wang, H., Rao, Z.

(2007) J Mol Biology 371: 1075-1083

Released	2007-08-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Malonyl CoA-acyl carrier protein transacylase (protein)
Unique Ligands	ACY

1 to 25 of 463 Structures

Page 1 of 19

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DBU | pdb_00001dbu

1DBX | pdb_00001dbx

1DJD | pdb_00001djd

1DL4 | pdb_00001dl4

1FJ4 | pdb_00001fj4

1FJ8 | pdb_00001fj8

1GGO | pdb_00001ggo

1HW1 | pdb_00001hw1

1HW2 | pdb_00001hw2

1I7V | pdb_00001i7v

1M62 | pdb_00001m62

1PYM | pdb_00001pym

1QBY | pdb_00001qby

1R5I | pdb_00001r5i

1T2T | pdb_00001t2t

1TVI | pdb_00001tvi

1ULW | pdb_00001ulw

1YW5 | pdb_00001yw5

2AXH | pdb_00002axh

2AXJ | pdb_00002axj

2MAY | pdb_00002may

2N96 | pdb_00002n96

2OJE | pdb_00002oje

2PY2 | pdb_00002py2

2QC3 | pdb_00002qc3