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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Martasek, P."

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Escherichia coli K-12 (10)
	Escherichia coli (9)
	Borreliella burgdorferi B31 (3)
	Mus musculus (3)
	Borrelia turicatae (2)
	Borreliella burgdorferi (2)
	Equine infectious anemia virus (2)
	Escherichia coli (strain K12) (1)
	Escherichia coli str. K-12 substr. W3110 (1)
	Niallia circulans (1)

More...

Taxonomy

	Bacteria (28)
	Eukaryota (3)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (29)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (30)
	DNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (11)
	2.5 - 3.0 (8)
	3.0 - 3.5 (2)
	> 4.5 (2)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (3)
	1995 - 1999 (4)
	2000 - 2004 (6)
	2005 - 2009 (5)
	2010 - 2014 (7)
	2015 - 2019 (1)
	2020 - 2024 (3)

Enzyme Classification Name

Transferases (7)

Symmetry Type

	Cyclic (21)
	Asymmetric (9)
	Dihedral (1)

SCOP Classification

	All alpha proteins (20)
	All beta proteins (8)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 30 Structures

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1CDG \| pdb_00001cdg	Download File View File

NUCLEOTIDE SEQUENCE AND X-RAY STRUCTURE OF CYCLODEXTRIN GLYCOSYLTRANSFERASE FROM BACILLUS CIRCULANS STRAIN 251 IN A MALTOSE-DEPENDENT CRYSTAL FORM

Lawson, C.L., Van Montfort, R., Strokopytov, B.V., Kalk, K.H., Rozeboom, H.J., Dijkstra, B.W.

(1994) J Mol Biology 236: 590-600

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Niallia circulans
Macromolecule	CYCLODEXTRIN GLYCOSYL-TRANSFERASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	GLC

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1EIA \| pdb_00001eia	Download File View File

X-RAY CRYSTAL STRUCTURE OF EQUINE INFECTIOUS ANEMIA VIRUS (EIAV) CAPSID PROTEIN P26

Jin, Z., Jin, L., Peterson, D.L., Lawson, C.L.

(1999) J Mol Biology 286: 83-93

Released	1999-02-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Equine infectious anemia virus
Macromolecule	EIAV CAPSID PROTEIN P26 (protein)

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1FJ1 \| pdb_00001fj1	Download File View File

LYME DISEASE ANTIGEN OSPA IN COMPLEX WITH NEUTRALIZING ANTIBODY FAB LA-2

Ding, W., Lawson, C.L.

(2000) J Mol Biology 302: 1153-1164

Released	2000-10-11
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Borreliella burgdorferi B31 Mus musculus
Macromolecule	HYBRIDOMA ANTIBODY LA2 (HEAVY CHAIN) (protein) HYBRIDOMA ANTIBODY LA2 (LIGHT CHAIN) (protein) OUTER SURFACE PROTEIN A (protein)

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1GGQ \| pdb_00001ggq	Download File View File

OUTER SURFACE PROTEIN C (OSPC) OF BORRELIA BURGDORFERI STRAIN B31

Dunn, J.J., Lawson, C.L.

(2001) EMBO J 20: 971-978

Released	2001-03-14
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Borreliella burgdorferi B31
Macromolecule	OUTER SURFACE PROTEIN C (protein)
Unique Ligands	MG

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1JHG \| pdb_00001jhg	Download File View File

TRP REPRESSOR MUTANT V58I

Lawson, C.L.

(1996) Nat Struct Biol 3: 986-987

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Escherichia coli
Macromolecule	TRP OPERON REPRESSOR (protein)
Unique Ligands	PO4, TRP

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1LB2 \| pdb_00001lb2	Download File View File

Structure of the E. coli alpha C-terminal domain of RNA polymerase in complex with CAP and DNA

Benoff, B., Yang, H., Lawson, C.L., Parkinson, G., Liu, J., Blatter, E., Ebright, Y.W., Berman, H.M., Ebright, R.H.

(2002) Science 297: 1562-1566

Released	2002-09-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) DNA-directed RNA polymerase alpha chain (protein) 5'-D(CPTPAPGPAPTPCPAPCPAPTPTPTPTPAPGPGPAPAPAPAPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPTPTPTPTPCPCPTPAPAPAPAPTPGPTPGPAPT)-3' (nucleic acid)
Unique Ligands	CMP

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1MI7 \| pdb_00001mi7	Download File View File

Crystal Structure of Domain Swapped trp Aporepressor in 30%(v/v) Isopropanol

Lawson, C.L., Benoff, B., Berger, T., Berman, H.M., Carey, J.

(2004) Structure 12: 1099-1108

Released	2003-09-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Trp operon repressor (protein)
Unique Ligands	IPA

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1OSP \| pdb_00001osp	Download File View File

CRYSTAL STRUCTURE OF OUTER SURFACE PROTEIN A OF BORRELIA BURGDORFERI COMPLEXED WITH A MURINE MONOCLONAL ANTIBODY FAB

Li, H., Lawson, C.L.

(1997) Proc Natl Acad Sci U S A 94: 3584-3589

Released	1997-04-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Borreliella burgdorferi B31 Mus musculus
Macromolecule	FAB 184.1 (protein) OUTER SURFACE PROTEIN A (protein)

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1P4P \| pdb_00001p4p	Download File View File

Outer Surface Protein B of B. burgdorferi: crystal structure of the C-terminal fragment

Becker, M., Bunikis, J., Lade, B.D., Dunn, J.J., Barbour, A.G., Lawson, C.L.

(2005) J Biological Chem 280: 17363-17370

Released	2004-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Borreliella burgdorferi
Macromolecule	Outer surface protein B (protein)

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1RJL \| pdb_00001rjl	Download File View File

Structure of the complex between OspB-CT and bactericidal Fab-H6831

Becker, M., Bunikis, J., Lade, B.D., Dunn, J.J., Barbour, A.G., Lawson, C.L.

(2005) J Biological Chem 280: 17363-17370

Released	2004-11-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Borreliella burgdorferi Mus musculus
Macromolecule	Fab H6831 H-chain (protein) Fab H6831 L-chain (protein) Outer surface protein B (protein)

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1TRO \| pdb_00001tro	Download File View File

CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION

Otwinowski, Z., Schevitz, R.W., Zhang, R.-G., Lawson, C.L., Joachimiak, A., Marmorstein, R., Luisi, B.F., Sigler, P.B.

(1988) Nature 335: 321-329

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli str. K-12 substr. W3110
Macromolecule	PROTEIN (TRP REPRESSOR) (protein) DNA (5'-D(TPGPTPAPCPTPAPGPTPTPAPAPCPTPAPGPT PAP*C)-3') (nucleic acid)
Unique Ligands	TRP

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1TRR \| pdb_00001trr	Download File View File

TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX

Lawson, C.L., Carey, J.

(1993) Nature 366: 178-182

Released	1993-10-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (TRP REPRESSOR) (protein) DNA (5'-D(APGPCPGPTPAPCPTPAPGPTPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	TRP

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1WRP \| pdb_00001wrp	Download File View File

FLEXIBILITY OF THE DNA-BINDING DOMAINS OF TRP REPRESSOR

Schewitz, R.W., Otwinowski, Z., Lawson, C.L., Joachimiak, A., Sigler, P.B.

(1988) Proteins 3: 18-31

Released	1988-04-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	TRP REPRESSOR (protein)
Unique Ligands	TRP

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1YJG \| pdb_00001yjg	Download File View File

Variable Small Protein 1 of Borrelia turicatae (VspA or Vsp1)

Zueckert, W.R., Yung, B.H., Barbour, A.G., Lawson, C.L.

(2006) J Bacteriol 188: 4522-4530

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Borrelia turicatae
Macromolecule	Surface protein VspA (protein)

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1ZT9 \| pdb_00001zt9	Download File View File

E. coli trp repressor, tetragonal crystal form

Lawson, C.L., Chin, A.S., Benoff, B., Yung, B.H.

To be published

Released	2006-05-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Trp operon repressor (protein)
Unique Ligands	SO4, TRP

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2EIA \| pdb_00002eia	Download File View File

X-RAY CRYSTAL STRUCTURE OF EQUINE INFECTIOUS ANEMIA VIRUS (EIAV) CAPSID PROTEIN P26

Jin, Z., Jin, L., Peterson, D.L., Lawson, C.L.

(1999) J Mol Biology 286: 83-93

Released	1998-12-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Equine infectious anemia virus
Macromolecule	EIAV CAPSID PROTEIN P26 (protein)

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2GA0 \| pdb_00002ga0	Download File View File

Variable Small Protein 1 of Borrelia turicatae (VspA or Vsp1)

Lawson, C.L., Yung, B.H., Barbour, A.G., Zuckert, W.R.

(2006) J Bacteriol 188: 4522-4530

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Borrelia turicatae
Macromolecule	surface protein VspA (protein)
Unique Ligands	NI

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2OZ9 \| pdb_00002oz9	Download File View File

E. coli TRP holorepressor, orthorhombic crystal form

Lawson, C.L., Sigler, P.B.

(1988) Proteins 3: 18-31

Released	2007-03-06
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	Trp operon repressor (protein)
Unique Ligands	NA, SO4, TRP

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3IYD \| pdb_00003iyd	Download File View File

Three-dimensional EM structure of an intact activator-dependent transcription initiation complex

Hudson, B.P., Quispe, J., Lara, S., Kim, Y., Berman, H., Arnold, E., Ebright, R.H., Lawson, C.L.

(2009) Proc Natl Acad Sci U S A 106: 19830-19835

Released	2009-11-10
Method	ELECTRON MICROSCOPY 19.8 Å
Organisms	Escherichia coli (strain K12) Escherichia coli K-12
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	CMP

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3K4G \| pdb_00003k4g	Download File View File

Crystal structure of E. coli RNA polymerase alpha subunit C-terminal domain

Lara-Gonzalez, S., Birktoft, J., Lawson, C.L.

(2010) Acta Crystallogr D Biol Crystallogr 66: 806-812

Released	2010-07-07
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA-directed RNA polymerase subunit alpha (protein)
Unique Ligands	NA

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3N4M \| pdb_00003n4m	Download File View File

E. coli RNA polymerase alpha subunit C-terminal domain in complex with CAP and DNA

Lara-Gonzalez, S., Birktoft, J.J., Lawson, C.L.

(2020) Biochemistry 59: 4523-4532

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.987 Å
Organisms	Escherichia coli K-12
Macromolecule	Catabolite gene activator (protein) DNA-directed RNA polymerase subunit alpha (protein) DNA (5'-D(CPTPAPGPAPTPCPAPCPAPTPTPTPTPAPGPGPAPAPAPAPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPTPTPTPTPCPCPTPAPAPAPAPTPGPTPGPAPT)-3') (nucleic acid)
Unique Ligands	CMP, PEG

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3N97 \| pdb_00003n97	Download File View File

RNA polymerase alpha C-terminal domain (E. coli) and sigma region 4 (T. aq. mutant) bound to (UP,-35 element) DNA

Lara-Gonzalez, S., Birktoft, J.J., Lawson, C.L.

(2020) Biochemistry 59: 4523-4532

Released	2011-06-08
Method	X-RAY DIFFRACTION 3.252 Å
Organisms	Escherichia coli K-12 Thermus aquaticus
Macromolecule	DNA-directed RNA polymerase subunit alpha (protein) RNA polymerase sigma factor (protein) DNA (5'-D(CPCPAPTPGPTPCPAPAPGPTPAPCPTPTPTPTPTPTPCPC)-3') (nucleic acid) DNA (5'-D(TPGPGPAPAPAPAPAPAPGPTPAPCPTPTPGPAPCPAPTPGP*G)-3') (nucleic acid)
Unique Ligands	ACT

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3SSW \| pdb_00003ssw	Download File View File

E. coli trp aporepressor

Benoff, B., Carey, J., Berman, H.M., Lawson, C.L.

(2012) Protein Sci 21: 63-74

Released	2011-07-20
Method	X-RAY DIFFRACTION 1.6693 Å
Organisms	Escherichia coli K-12
Macromolecule	Trp operon repressor (protein)

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3SSX \| pdb_00003ssx	Download File View File

E. coli trp aporeporessor L75F mutant

Benoff, B., Carey, J., Berman, H.M., Lawson, C.L.

(2012) Protein Sci 21: 63-74

Released	2011-07-20
Method	X-RAY DIFFRACTION 1.5801 Å
Organisms	Escherichia coli K-12
Macromolecule	Trp operon repressor (protein)
Unique Ligands	TAM

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4EV0 \| pdb_00004ev0	Download File View File

Crystal Structure of Thermus thermophilus Catabolite Activator Protein

Hudson, B.P., Turo, K., Birktoft, J.J., Lawson, C.L.

To be published

Released	2012-06-20
Method	X-RAY DIFFRACTION 2.402 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Transcription regulator, Crp family (protein)
Unique Ligands	CMP, MG, SO4

1 to 25 of 30 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1CDG | pdb_00001cdg

1EIA | pdb_00001eia

1FJ1 | pdb_00001fj1

1GGQ | pdb_00001ggq

1JHG | pdb_00001jhg

1LB2 | pdb_00001lb2

1MI7 | pdb_00001mi7

1OSP | pdb_00001osp

1P4P | pdb_00001p4p

1RJL | pdb_00001rjl

1TRO | pdb_00001tro

1TRR | pdb_00001trr

1WRP | pdb_00001wrp

1YJG | pdb_00001yjg

1ZT9 | pdb_00001zt9

2EIA | pdb_00002eia

2GA0 | pdb_00002ga0

2OZ9 | pdb_00002oz9

3IYD | pdb_00003iyd

3K4G | pdb_00003k4g

3N4M | pdb_00003n4m

3N97 | pdb_00003n97

3SSW | pdb_00003ssw

3SSX | pdb_00003ssx

4EV0 | pdb_00004ev0