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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Mase, T."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Sphingobium sp. MI1205 (8)
	Arthrobacter sp. KNK168 (2)
	Desulfurococcus amylolyticus (1)
	Homo sapiens (1)
	Xenopus laevis (1)

Taxonomy

	Bacteria (10)
	Eukaryota (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (11)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (3)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2010 - 2014 (9)
	2015 - 2019 (2)

Enzyme Classification Name

	Hydrolases (9)
	Transferases (1)

Symmetry Type

	Asymmetric (11)
	Cyclic (3)

SCOP Classification

	All alpha proteins (2)
	All beta proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 13 of 13 Structures

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1J8K \| pdb_00001j8k	Download File View File

NMR STRUCTURE OF THE FIBRONECTIN EDA DOMAIN, NMR, 20 STRUCTURES

Niimi, T., Osawa, M., Yamaji, N., Yasunaga, K., Sakashita, H., Mase, T., Tanaka, A., Fujita, S.

(2001) J Biomol NMR 21: 281-284

Released	2002-02-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FIBRONECTIN (protein)

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1MUX \| pdb_00001mux	Download File View File

SOLUTION NMR STRUCTURE OF CALMODULIN/W-7 COMPLEX: THE BASIS OF DIVERSITY IN MOLECULAR RECOGNITION, 30 STRUCTURES

Osawa, M., Swindells, M.B., Tanikawa, J., Tanaka, T., Mase, T., Furuya, T., Ikura, M.

(1998) J Mol Biology 276: 165-176

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)
Unique Ligands	CA, WW7

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3ORY \| pdb_00003ory	Download File View File

Crystal structure of Flap endonuclease 1 from hyperthermophilic archaeon Desulfurococcus amylolyticus

Mase, T., Kubota, K., Miyazono, K., Kawarabayashii, Y., Tanokura, M.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 209-213

Released	2011-02-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Desulfurococcus amylolyticus
Macromolecule	flap endonuclease 1 (protein)
Unique Ligands	PO4

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3WWH \| pdb_00003wwh	Download File View File

Crystal structure of the first R-stereoselective -transaminase identified from Arthrobacter sp. KNK168 (FERM-BP-5228)

Guan, L.J., Ohtsuka, J., Okai, M., Miyakawa, T., Mase, T., Zhi, Y., Ito, N., Yasohara, Y., Tanokura, M.

(2015) Sci Rep 5: 10753-10753

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Arthrobacter sp. KNK168
Macromolecule	(R)-amine transaminase (protein)
Unique Ligands	GOL, PLP

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3WWJ \| pdb_00003wwj	Download File View File

Crystal structure of an engineered sitagliptin-producing transaminase, ATA-117-Rd11

Guan, L.J., Ohtsuka, J., Okai, M., Miyakawa, T., Mase, T., Zhi, Y., Hou, F., Ito, N., Yasohara, Y., Tanokura, M.

(2015) Sci Rep 5: 10753-10753

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Arthrobacter sp. KNK168
Macromolecule	(R)-amine transaminase (protein)
Unique Ligands	PLP

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4H77 \| pdb_00004h77	Download File View File

Crystal structure of haloalkane dehalogenase LinB from Sphingobium sp. MI1205

Okai, M., Ohtsuka, J., Imai, F.L., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.

(2013) J Bacteriol 195: 2642-2651

Released	2013-06-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sphingobium sp. MI1205
Macromolecule	Haloalkane dehalogenase (protein)
Unique Ligands	CA, CL, GOL

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4H7D \| pdb_00004h7d	Download File View File

Crystal structure of haloalkane dehalogenase LinB T81A mutant from Sphingobium sp. MI1205

Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.

(2013) J Bacteriol 195: 2642-2651

Released	2013-06-05
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Sphingobium sp. MI1205
Macromolecule	Haloalkane dehalogenase (protein)
Unique Ligands	CA, CL, GOL

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4H7E \| pdb_00004h7e	Download File View File

Crystal structure of haloalkane dehalogenase LinB V112A mutant from Sphingobium sp. MI1205

Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.

(2013) J Bacteriol 195: 2642-2651

Released	2013-06-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sphingobium sp. MI1205
Macromolecule	Haloalkane dehalogenase (protein)
Unique Ligands	CA, CL, GOL

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4H7F \| pdb_00004h7f	Download File View File

Crystal structure of haloalkane dehalogenase LinB V134I mutant from Sphingobium sp. MI1205

Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.

(2013) J Bacteriol 195: 2642-2651

Released	2013-06-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sphingobium sp. MI1205
Macromolecule	Haloalkane dehalogenase (protein)
Unique Ligands	CA, CL, GOL

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4H7H \| pdb_00004h7h	Download File View File

Crystal structure of haloalkane dehalogenase LinB T135A mutant from Sphingobium sp. MI1205

Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.

(2013) J Bacteriol 195: 2642-2651

Released	2013-06-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Sphingobium sp. MI1205
Macromolecule	Haloalkane dehalogenase (protein)
Unique Ligands	CA, CL

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4H7I \| pdb_00004h7i	Download File View File

Crystal structure of haloalkane dehalogenase LinB L138I mutant from Sphingobium sp. MI1205

Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.

(2013) J Bacteriol 195: 2642-2651

Released	2013-06-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sphingobium sp. MI1205
Macromolecule	Haloalkane dehalogenase (protein)
Unique Ligands	CA, CL, GOL

Explore in 3D

4H7J \| pdb_00004h7j	Download File View File

Crystal structure of haloalkane dehalogenase LinB H247A mutant from Sphingobium sp. MI1205

Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.

(2013) J Bacteriol 195: 2642-2651

Released	2013-06-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sphingobium sp. MI1205
Macromolecule	Haloalkane dehalogenase (protein)
Unique Ligands	CA, CL, GOL

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4H7K \| pdb_00004h7k	Download File View File

Crystal structure of haloalkane dehalogenase LinB I253M mutant from Sphingobium sp. MI1205

Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.

(2013) J Bacteriol 195: 2642-2651

Released	2013-06-05
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Sphingobium sp. MI1205
Macromolecule	Haloalkane dehalogenase (protein)
Unique Ligands	CA, CL

1 to 13 of 13 Structures

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1J8K | pdb_00001j8k

NMR STRUCTURE OF THE FIBRONECTIN EDA DOMAIN, NMR, 20 STRUCTURES

1MUX | pdb_00001mux

SOLUTION NMR STRUCTURE OF CALMODULIN/W-7 COMPLEX: THE BASIS OF DIVERSITY IN MOLECULAR RECOGNITION, 30 STRUCTURES

3ORY | pdb_00003ory

Crystal structure of Flap endonuclease 1 from hyperthermophilic archaeon Desulfurococcus amylolyticus

3WWH | pdb_00003wwh

Crystal structure of the first R-stereoselective -transaminase identified from Arthrobacter sp. KNK168 (FERM-BP-5228)

3WWJ | pdb_00003wwj

Crystal structure of an engineered sitagliptin-producing transaminase, ATA-117-Rd11

4H77 | pdb_00004h77

Crystal structure of haloalkane dehalogenase LinB from Sphingobium sp. MI1205

4H7D | pdb_00004h7d

Crystal structure of haloalkane dehalogenase LinB T81A mutant from Sphingobium sp. MI1205

4H7E | pdb_00004h7e

Crystal structure of haloalkane dehalogenase LinB V112A mutant from Sphingobium sp. MI1205

4H7F | pdb_00004h7f

Crystal structure of haloalkane dehalogenase LinB V134I mutant from Sphingobium sp. MI1205

4H7H | pdb_00004h7h

Crystal structure of haloalkane dehalogenase LinB T135A mutant from Sphingobium sp. MI1205

4H7I | pdb_00004h7i

Crystal structure of haloalkane dehalogenase LinB L138I mutant from Sphingobium sp. MI1205

4H7J | pdb_00004h7j

Crystal structure of haloalkane dehalogenase LinB H247A mutant from Sphingobium sp. MI1205

4H7K | pdb_00004h7k

Crystal structure of haloalkane dehalogenase LinB I253M mutant from Sphingobium sp. MI1205

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1J8K | pdb_00001j8k

1MUX | pdb_00001mux

3ORY | pdb_00003ory

3WWH | pdb_00003wwh

3WWJ | pdb_00003wwj

4H77 | pdb_00004h77

4H7D | pdb_00004h7d

4H7E | pdb_00004h7e

4H7F | pdb_00004h7f

4H7H | pdb_00004h7h

4H7I | pdb_00004h7i

4H7J | pdb_00004h7j

4H7K | pdb_00004h7k