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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Maslennikov, I."

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Homo sapiens (9)
	Saccharomyces cerevisiae (9)
	Saccharomyces cerevisiae S288C (8)
	Caenorhabditis elegans (5)
	Rattus norvegicus (5)
	Kluyveromyces marxianus (3)
	Arabidopsis thaliana (2)
	Lachancea thermotolerans CBS 6340 (2)
	Lachancea thermotolerans (1)
	Mus musculus (1)

More...

Taxonomy

	Eukaryota (40)
	Eukaryota (eukaryotes) (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (34)
	SOLUTION NMR (6)

Polymer Entity Type

Protein (40)

Refinement Resolution (Å)

	1.5 - 2.0 (9)
	2.0 - 2.5 (11)
	2.5 - 3.0 (7)
	3.0 - 3.5 (7)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (15)
	2010 - 2014 (13)
	2015 - 2019 (7)
	2020 - 2024 (2)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (4)
	Transferases (4)

Symmetry Type

	Asymmetric (31)
	Cyclic (15)

SCOP Classification

	Alpha and beta proteins (a+b) (16)
	Artifacts (3)
	All beta proteins (2)

AllSelected

1 to 25 of 40 Structures

Page 1 of 2

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1UEC \| pdb_00001uec	Download File View File

Crystal structure of autoinhibited form of tandem SH3 domain of p47phox

Yuzawa, S., Suzuki, N.N., Fujioka, Y., Ogura, K., Sumimoto, H., Inagaki, F.

(2004) Genes Cells 9: 443-456

Released	2003-05-27
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil cytosol factor 1 (protein)

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1UGM \| pdb_00001ugm	Download File View File

Crystal Structure of LC3

Sugawara, K., Suzuki, N.N., Fujioka, Y., Mizushima, N., Ohsumi, Y., Inagaki, F.

(2004) Genes Cells 9: 611-618

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Rattus norvegicus
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3 (protein)

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1WZ3 \| pdb_00001wz3	Download File View File

The crystal structure of plant ATG12

Suzuki, N.N., Yoshimoto, K., Fujioka, Y., Ohsumi, Y., Inagaki, F.

(2005) Autophagy 1: 119-126

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	autophagy 12b (protein)

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1Z9Q \| pdb_00001z9q	Download File View File

Solution structure of SH3 domain of p40phox

Adachi, S., Ogura, K., Fujioka, Y., Inagaki, F.

To be published

Released	2006-03-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Neutrophil cytosol factor 4 (protein)

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2CY7 \| pdb_00002cy7	Download File View File

The crystal structure of human Atg4B

Sugawara, K., Suzuki, N.N., Fujioka, Y., Mizushima, N., Ohsumi, Y., Inagaki, F.

(2005) J Biological Chem 280: 40058-40065

Released	2005-09-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Cysteine protease APG4B (protein)

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2CZO \| pdb_00002czo	Download File View File

Solution Structure of the PX Domain of Bem1p

Maeda, A., Ogura, K., Horiuchi, M., Kumeta, H., Fujioka, Y., Inagaki, F.

To be published

Released	2006-10-03
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Bud emergence protein 1 (protein)

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2DYM \| pdb_00002dym	Download File View File

The crystal structure of Saccharomyces cerevisiae Atg5- Atg16(1-46) complex

Matsushita, M., Suzuki, N.N., Inagaki, F.

(2007) J Biological Chem 282: 6763-6772

Released	2006-12-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Autophagy protein 16 (protein) Autophagy protein 5 (protein)

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2DYO \| pdb_00002dyo	Download File View File

The crystal structure of Saccharomyces cerevisiae Atg5- Atg16(1-57) complex

Matsushita, M., Suzuki, N.N., Inagaki, F.

(2007) J Biological Chem 282: 6763-6772

Released	2006-12-26
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Autophagy protein 16 (protein) Autophagy protein 5 (protein)

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2DYT \| pdb_00002dyt	Download File View File

The crystal structure of Saccharomyces cerevisiae Atg3

Yamada, Y., Suzuki, N.N., Inagaki, F.

(2007) J Biological Chem 282: 8036-8043

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Autophagy-related protein 3 (protein)
Unique Ligands	SO4

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2JPE \| pdb_00002jpe	Download File View File

FHA domain of NIPP1

Kumeta, H., Ogura, K., Fujioka, Y., Tanuma, N., Kikuchi, K., Inagaki, F.

(2008) J Biomol NMR 40: 219-224

Released	2007-05-15
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Nuclear inhibitor of protein phosphatase 1 (protein)

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2K6Q \| pdb_00002k6q	Download File View File

LC3 p62 complex structure

Noda, N., Kumeta, H., Nakatogawa, H., Satoo, K., Adachi, W., Ishii, J., Fujioka, Y., Ohsumi, Y., Inagaki, F.

To be published

Released	2008-09-02
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein) p62_peptide from Sequestosome-1 (protein)

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2KWC \| pdb_00002kwc	Download File View File

The NMR structure of the autophagy-related protein Atg8

Kumeta, H., Watanabe, M., Nakatogawa, H., Yamaguchi, M., Ogura, K., Adachi, W., Fujioka, Y., Noda, N.N., Ohsumi, Y., Inagaki, F.

(2010) J Biomol NMR 47: 237-241

Released	2010-05-12
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Autophagy-related protein 8 (protein)

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2LI5 \| pdb_00002li5	Download File View File

NMR structure of Atg8-Atg7C30 complex

Kumeta, H., Satoo, K., Noda, N.N., Fujioka, Y., Ogura, K., Nakatogawa, H., Ohsumi, Y., Inagaki, F.

(2011) Mol Cell 44: 462-475

Released	2011-11-16
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Autophagy-related protein 8 (protein) Ubiquitin-like modifier-activating enzyme ATG7 (protein)

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2Z0D \| pdb_00002z0d	Download File View File

The crystal structure of human Atg4B- LC3(1-120) complex

Satoo, K., Noda, N.N., Inagaki, F.

(2009) EMBO J 28: 1341-1350

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Cysteine protease ATG4B (protein) Microtubule-associated proteins 1A/1B light chain 3B (protein)

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2Z0E \| pdb_00002z0e	Download File View File

The crystal structure of human Atg4B- LC3(1-124) complex

Satoo, K., Noda, N.N., Inagaki, F.

(2009) EMBO J 28: 1341-1350

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Cysteine protease ATG4B (protein) Microtubule-associated proteins 1A/1B light chain 3B (protein)

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2ZPN \| pdb_00002zpn	Download File View File

The crystal structure of Saccharomyces cerevisiae Atg8- Atg19(412-415) complex

Noda, N.N., Inagaki, F.

(2008) Genes Cells 13: 1211-1218

Released	2008-12-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	Autophagy-related protein 8 (protein) Saccharomyces cerevisiae Atg19(412-415) (protein)
Unique Ligands	SO4

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2ZZP \| pdb_00002zzp	Download File View File

The crystal structure of human Atg4B(C74S)- LC3(1-124) complex

Satoo, K., Noda, N.N., Inagaki, F.

(2009) EMBO J 28: 1341-1350

Released	2009-03-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Cysteine protease ATG4B (protein) Microtubule-associated proteins 1A/1B light chain 3B (protein)

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3A7O \| pdb_00003a7o	Download File View File

The crystal structure of the coiled-coil domain of Saccharomyces cerevisiae Atg16

Fujioka, Y., Noda, N.N., Inagaki, F.

(2010) J Biological Chem 285: 1508-1515

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Autophagy protein 16 (protein)

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3A7P \| pdb_00003a7p	Download File View File

The crystal structure of Saccharomyces cerevisiae Atg16

Fujioka, Y., Noda, N.N., Inagaki, F.

(2010) J Biological Chem 285: 1508-1515

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Autophagy protein 16 (protein)

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3VH1 \| pdb_00003vh1	Download File View File

Crystal structure of Saccharomyces cerevisiae Atg7 (1-595)

Noda, N.N., Satoo, K., Inagaki, F.

(2011) Mol Cell 44: 462-475

Released	2011-09-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like modifier-activating enzyme ATG7 (protein)
Unique Ligands	ZN

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3VH2 \| pdb_00003vh2	Download File View File

Crystal structure of Saccharomyces cerevisiae Atg7 (1-613)

Noda, N.N., Satoo, K., Inagaki, F.

(2011) Mol Cell 44: 462-475

Released	2011-09-21
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like modifier-activating enzyme ATG7 (protein)
Unique Ligands	ZN

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3VH3 \| pdb_00003vh3	Download File View File

Crystal structure of Atg7CTD-Atg8 complex

Noda, N.N., Satoo, K., Inagaki, F.

(2011) Mol Cell 44: 462-475

Released	2011-09-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Autophagy-related protein 8 (protein) Ubiquitin-like modifier-activating enzyme ATG7 (protein)
Unique Ligands	ZN

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3VH4 \| pdb_00003vh4	Download File View File

Crystal structure of Atg7CTD-Atg8-MgATP complex

Noda, N.N., Satoo, K., Inagaki, F.

(2011) Mol Cell 44: 462-475

Released	2011-09-21
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Autophagy-related protein 8 (protein) Ubiquitin-like modifier-activating enzyme ATG7 (protein)
Unique Ligands	ATP, MG, ZN

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3VP7 \| pdb_00003vp7	Download File View File

Crystal structure of the beta-alpha repeated, autophagy-specific (BARA) domain of Vps30/Atg6

Noda, N.N., Kobayashi, T., Adachi, W., Fujioka, Y., Ohsumi, Y., Inagaki, F.

(2012) J Biological Chem 287: 16256-16266

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Vacuolar protein sorting-associated protein 30 (protein)