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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Mori, T."

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Search Summary

This query matches 163 Structures.

Refinements

Structure Determination Methodology

experimental (163)

Scientific Name of Source Organism

	Mus musculus (18)
	Physeter macrocephalus (11)
	Cannabis sativa (9)
	Homo sapiens (7)
	Aspergillus sp. (6)
	Streptomyces blastmyceticus (6)
	Arthrobacter globiformis (5)
	Aspergillus novofumigatus (5)
	Streptomyces sp. ATCC 700974 (5)
	Weissella cibaria (5)

More...

Taxonomy

	Eukaryota (86)
	Bacteria (74)
	other sequences (2)
	Archaea (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (157)
	ELECTRON MICROSCOPY (5)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (163)

Refinement Resolution (Å)

	1.0 - 1.5 (16)
	1.5 - 2.0 (49)
	2.0 - 2.5 (67)
	2.5 - 3.0 (22)
	3.0 - 3.5 (5)
	3.5 - 4.0 (2)
	> 4.5 (1)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (6)
	2010 - 2014 (10)
	2015 - 2019 (67)
	2020 - 2024 (74)
	2025 - 2029 (2)

Enzyme Classification Name

	Oxidoreductases (22)
	Transferases (18)
	Hydrolases (14)
	Lyases (13)
	Isomerases (7)
	Ligases (1)

Symmetry Type

	Asymmetric (80)
	Cyclic (74)
	Dihedral (9)
	Octahedral (1)

SCOP Classification

	All alpha proteins (22)
	Alpha and beta proteins (a/b) (9)
	Alpha and beta proteins (a+b) (11)
	Artifacts (11)
	All beta proteins (5)

AllSelected

1 to 25 of 163 Structures

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1L5B \| pdb_00001l5b	Download File View File

DOMAIN-SWAPPED CYANOVIRIN-N DIMER

Barrientos, L.G., Louis, J.M., Botos, I., Mori, T., Han, Z., O'Keefe, B.R., Boyd, M.R., Wlodawer, A., Gronenborn, A.M.

(2002) Structure 10: 673-686

Released	2002-05-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Nostoc ellipsosporum
Macromolecule	cyanovirin-N (protein)
Unique Ligands	NA, NHE

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1L5E \| pdb_00001l5e	Download File View File

The domain-swapped dimer of CV-N in solution

Barrientos, L.G., Louis, J.M., Botos, I., Mori, T., Han, Z., O'Keefe, B.R., Boyd, M.R., Wlodawer, A., Gronenborn, A.M.

(2002) Structure 10: 673-686

Released	2002-06-05
Method	SOLUTION NMR
Organisms	Nostoc ellipsosporum
Macromolecule	Cyanovirin-N (protein)

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1LOM \| pdb_00001lom	Download File View File

CYANOVIRIN-N DOUBLE MUTANT P51S S52P

Botos, I., Mori, T., Cartner, L.K., Boyd, M.R., Wlodawer, A.

(2002) Biochem Biophys Res Commun 294: 184-190

Released	2002-06-26
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Nostoc ellipsosporum
Macromolecule	Cyanovirin-N (protein)
Unique Ligands	CA, SO4

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1TF7 \| pdb_00001tf7	Download File View File

Crystal Structure of Circadian Clock Protein KaiC

Pattanayek, R., Wang, J., Mori, T., Xu, Y., Johnson, C.H., Egli, M.

(2004) Mol Cell 15: 375-388

Released	2004-08-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Synechococcus sp.
Macromolecule	KaiC (protein)
Unique Ligands	ATP

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1U9I \| pdb_00001u9i	Download File View File

Crystal Structure of Circadian Clock Protein KaiC with Phosphorylation Sites

Xu, Y., Mori, T., Pattanayek, R., Pattanayek, S., Egli, M., Johnson, C.H.

(2004) Proc Natl Acad Sci U S A 101: 13933-13938

Released	2005-04-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	KaiC (protein)
Unique Ligands	ATP, MG

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2GBL \| pdb_00002gbl	Download File View File

Crystal Structure of Full Length Circadian Clock Protein KaiC with Phosphorylation Sites

Pattanayek, R., Williams, D.R., Pattanayek, S., Xu, Y., Mori, T., Johnson, C.H., Stewart, P.L., Egli, M.

(2006) EMBO J 25: 2017-2028

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Circadian clock protein kinase kaiC (protein)
Unique Ligands	ATP, MG

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2ZPY \| pdb_00002zpy	Download File View File

Crystal structure of the mouse radxin FERM domain complexed with the mouse CD44 cytoplasmic peptide

Mori, T., Kitano, K., Terawaki, S., Maesaki, R., Fukami, Y., Hakoshima, T.

(2008) J Biological Chem 283: 29602-29612

Released	2008-08-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	CD44 antigen (protein) Radixin (protein)

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3A8N \| pdb_00003a8n	Download File View File

Crystal structure of the Tiam1 PHCCEx domain

Terawaki, S., Kitano, K., Mori, T., Zhai, Y., Higuchi, Y., Itoh, N., Watanabe, T., Kaibuchi, K., Hakoshima, T.

(2010) EMBO J 29: 236-250

Released	2009-11-24
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Mus musculus
Macromolecule	T-lymphoma invasion and metastasis-inducing protein 1 (protein)

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3A8P \| pdb_00003a8p	Download File View File

Crystal structure of the Tiam2 PHCCEx domain

Terawaki, S., Kitano, K., Mori, T., Zhai, Y., Higuchi, Y., Itoh, N., Watanabe, T., Kaibuchi, K., Hakoshima, T.

(2010) EMBO J 29: 236-250

Released	2009-11-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	T-lymphoma invasion and metastasis-inducing protein 2 (protein)

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3A8Q \| pdb_00003a8q	Download File View File

Low-resolution crystal structure of the Tiam2 PHCCEx domain

Terawaki, S., Kitano, K., Mori, T., Zhai, Y., Higuchi, Y., Itoh, N., Watanabe, T., Kaibuchi, K., Hakoshima, T.

(2010) EMBO J 29: 236-250

Released	2009-11-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mus musculus
Macromolecule	T-lymphoma invasion and metastasis-inducing protein 2 (protein)

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3S1A \| pdb_00003s1a	Download File View File

Crystal structure of the phosphorylation-site double mutant S431E/T432E of the KaiC circadian clock protein

Pattanayek, R., Williams, D.W., Rossi, G., Weigand, S., Mori, T., Johnson, C.H., Stewart, P.L., Egli, M.

(2011) PLoS One 6: e23697-e23697

Released	2011-09-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Circadian clock protein kinase kaiC (protein)
Unique Ligands	ATP, MG

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3W04 \| pdb_00003w04	Download File View File

Crystal structure of Oryza sativa DWARF14 (D14)

Kagiyama, M., Hirano, Y., Mori, T., Kim, S.Y., Kyozuka, J., Seto, Y., Yamaguchi, S., Hakoshima, T.

(2013) Genes Cells 18: 147-160

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Dwarf 88 esterase (protein)
Unique Ligands	EDO, EPE, MPD

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3W05 \| pdb_00003w05	Download File View File

Crystal structure of Oryza sativa DWARF14 (D14) in complex with PMSF

Kagiyama, M., Hirano, Y., Mori, T., Kim, S.Y., Kyozuka, J., Seto, Y., Yamaguchi, S., Hakoshima, T.

(2013) Genes Cells 18: 147-160

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Dwarf 88 esterase (protein)
Unique Ligands	EDO, PMS

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3W06 \| pdb_00003w06	Download File View File

Crystal structure of Arabidopsis thaliana DWARF14 Like (AtD14L)

Kagiyama, M., Hirano, Y., Mori, T., Kim, S.Y., Kyozuka, J., Seto, Y., Yamaguchi, S., Hakoshima, T.

(2013) Genes Cells 18: 147-160

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Arabidopsis thaliana
Macromolecule	Hydrolase, alpha/beta fold family protein (protein)
Unique Ligands	EDO

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3WA0 \| pdb_00003wa0	Download File View File

Crystal structure of merlin complexed with DCAF1/VprBP

Mori, T., Gotoh, S., Shirakawa, M., Hakoshima, T.

(2014) Genes Cells 19: 603-619

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Merlin (protein) Protein VPRBP (protein)

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3WD7 \| pdb_00003wd7	Download File View File

Type III polyketide synthase

Mori, T., Shimokawa, Y., Matsui, T., Kato, R., Sugio, S., Morita, H., Abe, I.

To be published

Released	2013-09-04
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Citrus x microcarpa
Macromolecule	Type III polyketide synthases acridone synthase (protein)
Unique Ligands	COA, NI, SO4

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3WD8 \| pdb_00003wd8	Download File View File

TypeIII polyketide synthases

Mori, T., Shimokawa, Y., Matsui, T., Morita, H., Abe, I.

To be published

Released	2013-09-04
Method	X-RAY DIFFRACTION 2.463 Å
Organisms	Citrus x microcarpa
Macromolecule	Type III polyketide synthase quinolone synthase (protein)
Unique Ligands	GOL

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3WX1 \| pdb_00003wx1	Download File View File

Mouse Cereblon thalidomide binding domain, selenomethionine derivative

Mori, T., Ito, T., Hirano, Y., Yamaguchi, Y., Handa, H., Hakoshima, T.

(2014) Nat Struct Mol Biol 21: 803-809

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Mus musculus
Macromolecule	Protein cereblon (protein)
Unique Ligands	SO4, ZN

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3WX2 \| pdb_00003wx2	Download File View File

Mouse Cereblon thalidomide binding domain, native

Mori, T., Ito, T., Hirano, Y., Yamaguchi, Y., Handa, H., Hakoshima, T.

(2014) Nat Struct Mol Biol 21: 803-809

Released	2014-08-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Protein cereblon (protein)
Unique Ligands	SO4, ZN

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3WXY \| pdb_00003wxy	Download File View File

Crystal structure of CsyB complexed with CoA-SH

Mori, T., Yang, D., Matsui, T., Morita, H., Fujii, I., Abe, I.

(2015) J Biological Chem 290: 5214-5225

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.706 Å
Organisms	Aspergillus oryzae
Macromolecule	Putative uncharacterized protein csyB (protein)
Unique Ligands	COA

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3WXZ \| pdb_00003wxz	Download File View File

The structure of the I375F mutant of CsyB

Mori, T., Yang, D., Matsui, T., Morita, H., Fujii, I., Abe, I.

(2015) J Biological Chem 290: 5214-5225

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.303 Å
Organisms	Aspergillus oryzae
Macromolecule	Putative uncharacterized protein csyB (protein)

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3WY0 \| pdb_00003wy0	Download File View File

The I375W mutant of CsyB complexed with CoA-SH

Mori, T., Yang, D., Matsui, T., Morita, H., Fujii, I., Abe, I.

(2015) J Biological Chem 290: 5214-5225

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Aspergillus oryzae
Macromolecule	Putative uncharacterized protein csyB (protein)
Unique Ligands	COA

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3X23 \| pdb_00003x23	Download File View File

Radixin complex

Terawaki, S., Kitano, K., Aoyama, M., Mori, T., Hakoshima, T.

(2015) Genes Cells 20: 847-859

Released	2015-10-21
Method	X-RAY DIFFRACTION 2.396 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Peptide from Matrix metalloproteinase-14 (protein) Radixin (protein)

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3X27 \| pdb_00003x27	Download File View File

Structure of McbB in complex with tryptophan

Mori, T., Sahashi, S., Morita, H., Abe, I.

(2015) Chem Biol 22: 898-906

Released	2015-10-28
Method	X-RAY DIFFRACTION 2.481 Å
Organisms	Marinactinospora thermotolerans
Macromolecule	Cucumopine synthase (protein)
Unique Ligands	TRP

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4DUG \| pdb_00004dug	Download File View File

Crystal Structure of Circadian Clock Protein KaiC E318A Mutant

Egli, M., Mori, T., Pattanayek, R., Xu, Y., Qin, X., Johnson, C.H.

(2012) Biochemistry 51: 1547-1558

Released	2012-03-14
Method	X-RAY DIFFRACTION 3.292 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Circadian clock protein kinase kaiC (protein)
Unique Ligands	ATP, MG, PO4

1 to 25 of 163 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1L5B | pdb_00001l5b

1L5E | pdb_00001l5e

1LOM | pdb_00001lom

1TF7 | pdb_00001tf7

1U9I | pdb_00001u9i

2GBL | pdb_00002gbl

2ZPY | pdb_00002zpy

3A8N | pdb_00003a8n

3A8P | pdb_00003a8p

3A8Q | pdb_00003a8q

3S1A | pdb_00003s1a

3W04 | pdb_00003w04

3W05 | pdb_00003w05

3W06 | pdb_00003w06

3WA0 | pdb_00003wa0

3WD7 | pdb_00003wd7

3WD8 | pdb_00003wd8

3WX1 | pdb_00003wx1

3WX2 | pdb_00003wx2

3WXY | pdb_00003wxy

3WXZ | pdb_00003wxz

3WY0 | pdb_00003wy0

3X23 | pdb_00003x23

3X27 | pdb_00003x27

4DUG | pdb_00004dug