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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Neya, S."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (4)
	Physeter macrocephalus (3)
	Homo sapiens (2)
	Equus caballus (1)

Taxonomy

	Eukaryota (6)
	Riboviria (4)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (6)
	2.5 - 3.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (1)
	2005 - 2009 (3)
	2015 - 2019 (5)

Enzyme Classification Name

	Oxidoreductases (3)
	Hydrolases (4)

Symmetry Type

	Asymmetric (7)
	Cyclic (3)

SCOP Classification

	All alpha proteins (6)
	Alpha and beta proteins (a/b) (4)
	Artifacts (4)

AllSelected

1 to 10 of 10 Structures

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1IOP \| pdb_00001iop	Download File View File

INCORPORATION OF A HEMIN WITH THE SHORTEST ACID SIDE-CHAINS INTO MYOGLOBIN

Igarashi, N., Neya, S., Funasaki, N., Tanaka, N.

(1998) Biochemistry 37: 5487-5493

Released	1998-04-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	CYN, HE6, SO4

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2CMM \| pdb_00002cmm	Download File View File

STRUCTURAL ANALYSIS OF THE MYOGLOBIN RECONSTITUTED WITH IRON PORPHINE

Sato, T., Tanaka, N., Moriyama, H., Igarashi, N., Neya, S., Funasaki, N., Iizuka, T., Shiro, Y.

(1993) J Biological Chem 268: 8935-8942

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	CYN, POR

Explore in 3D

2D5X \| pdb_00002d5x	Download File View File

Crystal structure of carbonmonoxy horse hemoglobin complexed with L35

Yokoyama, T., Neya, S., Tsuneshige, A., Yonetani, T., Park, S.Y., Tame, J.R.

(2006) J Mol Biology 356: 790-801

Released	2006-03-07
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Equus caballus
Macromolecule	Hemoglobin alpha subunit (protein) Hemoglobin beta subunit (protein)
Unique Ligands	CMO, HEM, L35

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2D5Z \| pdb_00002d5z	Download File View File

Crystal structure of T-state human hemoglobin complexed with three L35 molecules

Yokoyama, T., Neya, S., Tsuneshige, A., Yonetani, T., Park, S.Y., Tame, J.R.

(2006) J Mol Biology 356: 790-801

Released	2006-03-07
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin alpha subunit (protein) Hemoglobin beta subunit (protein)
Unique Ligands	HEM, L35

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2D60 \| pdb_00002d60	Download File View File

Crystal structure of deoxy human hemoglobin complexed with two L35 molecules

Yokoyama, T., Neya, S., Tsuneshige, A., Yonetani, T., Park, S.Y., Tame, J.R.

(2006) J Mol Biology 356: 790-801

Released	2006-03-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin alpha subunit (protein) Hemoglobin beta subunit (protein)
Unique Ligands	HEM, L35

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4YYL \| pdb_00004yyl	Download File View File

Phenolic acid derivative bound to influenza strain H1N1 polymerase subunit PA endonuclease

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2015) Bioorg Med Chem 23: 5466-5475

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.905 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4KN, MN, SO4

Explore in 3D

4ZHZ \| pdb_00004zhz	Download File View File

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region with expelling one of the metal ions in the active site

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-05-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4P8, MN, SO4

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4ZI0 \| pdb_00004zi0	Download File View File

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region without a chelation to the metal ions in the active site

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-05-13
Method	X-RAY DIFFRACTION 1.802 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4P9, MN, SO4

Explore in 3D

4ZQQ \| pdb_00004zqq	Download File View File

Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein,Polymerase acidic protein (protein)
Unique Ligands	MN, SO4

Explore in 3D

5XL0 \| pdb_00005xl0	Download File View File

met-aquo form of sperm whale myoglobin reconstituted with 7-PF, a heme possesseing CF3 group as side chain

Kanai, Y., Harada, A., Shibata, T., Nishimura, R., Namiki, K., Watanabe, M., Nakamura, S., Yumoto, F., Senda, T., Suzuki, A., Neya, S., Yamamoto, Y.

(2017) Biochemistry 56: 4500-4508

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	89R, SO4

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1IOP | pdb_00001iop

INCORPORATION OF A HEMIN WITH THE SHORTEST ACID SIDE-CHAINS INTO MYOGLOBIN

2CMM | pdb_00002cmm

STRUCTURAL ANALYSIS OF THE MYOGLOBIN RECONSTITUTED WITH IRON PORPHINE

2D5X | pdb_00002d5x

Crystal structure of carbonmonoxy horse hemoglobin complexed with L35

2D5Z | pdb_00002d5z

Crystal structure of T-state human hemoglobin complexed with three L35 molecules

2D60 | pdb_00002d60

Crystal structure of deoxy human hemoglobin complexed with two L35 molecules

4YYL | pdb_00004yyl

Phenolic acid derivative bound to influenza strain H1N1 polymerase subunit PA endonuclease

4ZHZ | pdb_00004zhz

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region with expelling one of the metal ions in the active site

4ZI0 | pdb_00004zi0

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region without a chelation to the metal ions in the active site

4ZQQ | pdb_00004zqq

Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region

5XL0 | pdb_00005xl0

met-aquo form of sperm whale myoglobin reconstituted with 7-PF, a heme possesseing CF3 group as side chain

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1IOP | pdb_00001iop

2CMM | pdb_00002cmm

2D5X | pdb_00002d5x

2D5Z | pdb_00002d5z

2D60 | pdb_00002d60

4YYL | pdb_00004yyl

4ZHZ | pdb_00004zhz

4ZI0 | pdb_00004zi0

4ZQQ | pdb_00004zqq

5XL0 | pdb_00005xl0