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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Pepys, M.B."

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Search Summary

This query matches 419 Structures.

Refinements

Structure Determination Methodology

experimental (419)

Scientific Name of Source Organism

	Homo sapiens (132)
	Severe acute respiratory syndrome coronavirus 2 (57)
	synthetic construct (33)
	Escherichia coli (32)
	Bos taurus (12)
	Mus musculus (12)
	Bacillus subtilis (11)
	Enterobacteria phage T6 (11)
	Aspergillus terreus (9)
	Bacillus subtilis A29 (9)

More...

Taxonomy

	Eukaryota (202)
	Bacteria (189)
	Riboviria (68)
	other sequences (33)
	Duplodnaviria (16)
	Archaea (11)
	Eukaryota (eukaryotes) (2)
	Viruses incertae sedis (2)

Experimental Method

	X-RAY DIFFRACTION (284)
	ELECTRON MICROSCOPY (115)
	SOLUTION NMR (20)

Polymer Entity Type

	Protein (404)
	DNA (26)
	RNA (16)
	NA-hybrid (2)

Refinement Resolution (Å)

	1.0 - 1.5 (17)
	1.5 - 2.0 (86)
	2.0 - 2.5 (93)
	2.5 - 3.0 (74)
	3.0 - 3.5 (58)
	3.5 - 4.0 (38)
	4.0 - 4.5 (14)
	> 4.5 (19)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (3)
	2000 - 2004 (101)
	2005 - 2009 (16)
	2010 - 2014 (35)
	2015 - 2019 (57)
	2020 - 2024 (191)
	2025 - 2029 (15)

Enzyme Classification Name

	Oxidoreductases (24)
	Transferases (89)
	Hydrolases (68)
	Translocases (14)
	Isomerases (22)
	Lyases (18)
	Ligases (7)

Membrane Protein Annotation

	PDBTM (46)
	MemProtMD (31)
	OPM (24)
	mpstruc (26)

Symmetry Type

	Asymmetric (219)
	Cyclic (186)
	Dihedral (29)
	Tetrahedral (3)
	Icosahedral (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (68)
	Artifacts (61)
	Alpha and beta proteins (a+b) (71)
	Membrane and cell surface proteins and peptides (13)
	All beta proteins (35)
	All alpha proteins (21)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 419 Structures

Page 1 of 17

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149D \| pdb_0000149d	Download File View File

SOLUTION STRUCTURE OF A PYRIMIDINE(DOT)PURINE(DOT) PYRIMIDINE DNA TRIPLEX CONTAINING T(DOT)AT, C+(DOT)GC AND G(DOT)TA TRIPLES

Radhakrishnan, I., Patel, D.J.

(1994) Structure 2: 17

Released	1994-04-30
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPTPAPTPTPC)-3' (nucleic acid) 5'-D(CPTPTPGPTPCPC)-3' (nucleic acid) 5'-D(GPAPAPTPAPGP*G)-3' (nucleic acid)

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1AC3 \| pdb_00001ac3	Download File View File

SOLUTION STRUCTURE OF AN RNA-DNA HYBRID DUPLEX CONTAINING A 3'-THIOFORMACETAL LINKER AND AN RNA A-TRACT, NMR, 8 STRUCTURES

Cross, C.W., Rice, J.S., Gao, X.

(1997) Biochemistry 36: 4096-4107

Released	1997-06-16
Method	SOLUTION NMR
Macromolecule	ANTISENSE HYBRID DUPLEX (nucleic acid) DNA (5'-D((TCP)PTPGPCPGPC)-3') (nucleic acid)

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1CX5 \| pdb_00001cx5	Download File View File

ANTISENSE DNA/RNA HYBRID CONTAINING MODIFIED BACKBONE

Yang, X., Han, X., Cross, C., Sanghvi, Y., Gao, X.

(1999) Biochemistry 38: 12586-12596

Released	1999-09-14
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPGPTPT(MMT)PTPGPCPGPC) (nucleic acid) 5'-R(GPCPGPCPAPAPAPAPCPGPCPG) (nucleic acid)

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1INN \| pdb_00001inn	Download File View File

CRYSTAL STRUCTURE OF D. RADIODURANS LUXS, P21

Lewis, H.A., Furlong, E.B., Bergseid, M.G., Sanderson, W.E., Buchanan, S.G.

(2001) Structure 9: 527-537

Released	2001-06-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Deinococcus radiodurans
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS (protein)
Unique Ligands	MET, ZN

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1J6V \| pdb_00001j6v	Download File View File

CRYSTAL STRUCTURE OF D. RADIODURANS LUXS, C2

Lewis, H.A., Furlong, E.B., Bergseid, M.G., Sanderson, W.E., Buchanan, S.G.

(2001) Structure 9: 527-537

Released	2001-06-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Deinococcus radiodurans
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS (protein)
Unique Ligands	ZN

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1J6W \| pdb_00001j6w	Download File View File

CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE LUXS

Lewis, H.A., Furlong, E.B., Bergseid, M.G., Sanderson, W.E., Buchanan, S.G.

(2001) Structure 9: 527-537

Released	2001-06-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Haemophilus influenzae
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS (protein)
Unique Ligands	MET, ZN

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1J6X \| pdb_00001j6x	Download File View File

CRYSTAL STRUCTURE OF HELICOBACTER PYLORI LUXS

Lewis, H.A., Furlong, E.B., Bergseid, M.G., Sanderson, W.E., Buchanan, S.G.

(2001) Structure 9: 527-537

Released	2001-06-08
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Helicobacter pylori
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS (protein)
Unique Ligands	MET, ZN

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1K5I \| pdb_00001k5i	Download File View File

NMR Structure of a Ribosomal RNA Hairpin Containing a Conserved CUCAA Pentaloop

Nagaswamy, U., Gao, X., Martinis, S.A., Fox, G.E.

(2001) Nucleic Acids Res 29: 5129-5139

Released	2001-10-17
Method	SOLUTION NMR
Macromolecule	5'-R(PGPGPAPCPCPCPGPGPGPCPUPCPAPAPCPCPUPGPGPGPUPCP*C)-3' (nucleic acid)

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1KVH \| pdb_00001kvh	Download File View File

NCSi-gb-bulge-DNA complex induced formation of a DNA bulge structure by a molecular wedge ligand-post-activated neocarzinostatin chromophore

Gao, X., Stassinopoulos, A., Ji, J., Kwon, Y., Bare, S., Goldberg, I.H.

(2002) Biochemistry 41: 5131-5143

Released	2002-06-19
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPCPGPAPTPGPC)-3' (nucleic acid) 5'-D(GPCPAPAPTPTPCPGPGPG)-3' (nucleic acid)
Unique Ligands	NCS

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1L0L \| pdb_00001l0l	Download File View File

structure of bovine mitochondrial cytochrome bc1 complex with a bound fungicide famoxadone

Gao, X., Wen, X., Yu, C.A., Esser, L., Tsao, S., Quinn, B., Zhang, L., Yu, L., Xia, D.

(2003) Biochemistry 41: 11692-11702

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, FMX, HEM

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1L0N \| pdb_00001l0n	Download File View File

native structure of bovine mitochondrial cytochrome bc1 complex

Gao, X., Wen, X., Yu, C.A., Esser, L., Tsao, S., Quinn, B., Zhang, L., Yu, L., Xia, D.

(2003) Biochemistry 41: 11692-11702

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM

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1MDO \| pdb_00001mdo	Download File View File

Crystal structure of ArnB aminotransferase with pyridomine 5' phosphate

Noland, B.W., Newman, J.M., Hendle, J., Badger, J., Christopher, J.A., Tresser, J., Buchanan, M.D., Wright, T., Rutter, M.E., Sanderson, W.E., Muller-Dieckmann, H.-J., Gajiwala, K., Sauder, J.M., Buchanan, S.G.

(2002) Structure 10: 1569-1580

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	ArnB aminotransferase (protein)
Unique Ligands	PMP

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1MDX \| pdb_00001mdx	Download File View File

Crystal structure of ArnB transferase with pyridoxal 5' phosphate

Noland, B.W., Newman, J.M., Hendle, J., Badger, J., Christopher, J.A., Tresser, J., Buchanan, M.D., Wright, T.A., Rutter, M.E., Sanderson, W.E., Muller-Dieckmann, H.-J., Gajiwala, K.S., Sauder, J.M., Buchanan, S.G.

(2002) Structure 10: 1569-1580

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (protein)
Unique Ligands	AKG, GOL

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1MDZ \| pdb_00001mdz	Download File View File

Crystal structure of ArnB aminotransferase with cycloserine and pyridoxal 5' phosphate

(2002) Structure 10: 1569-1580

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	ArnB aminotransferase (protein)
Unique Ligands	DCS, PLP

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1MP7 \| pdb_00001mp7	Download File View File

A Third Complex of Post-Activated Neocarzinostatin Chromophore with DNA. Bulge DNA Binding from the Minor Groove

Kwon, Y., Xi, Z., Kappen, L.S., Goldberg, I.H., Gao, X.

(2003) Biochemistry 42: 1186-1198

Released	2003-02-18
Method	SOLUTION NMR
Macromolecule	5'-D(GPCPCPAPGPAPGPAPGPC)-3' (nucleic acid)
Unique Ligands	NCG

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1NOQ \| pdb_00001noq	Download File View File

e-motif structure

Zheng, M., Huang, X., Smith, G.K., Yang, X., Gao, X.

(1996) J Mol Biology 264: 323-336

Released	2003-02-11
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPGPCPCPG)-3' (nucleic acid)

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1NP5 \| pdb_00001np5	Download File View File

(GAC)3 parallel duplex

Zheng, M., Han, X., Gao, X.

To be published

Released	2003-02-11
Method	SOLUTION NMR
Macromolecule	5'-D(GPAPCPGPAPCPGPAP*C)-3' (nucleic acid)

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1NTK \| pdb_00001ntk	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 in Complex with Antimycin A1

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C.-A., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	AY1, FES, HEM

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1NTM \| pdb_00001ntm	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 Complex at 2.4 Angstrom

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM

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1NTZ \| pdb_00001ntz	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 Complex Bound with Ubiquinone

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C.-A., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM, UQ2

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1NU1 \| pdb_00001nu1	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 Complexed with 2-nonyl-4-hydroxyquinoline N-oxide (NQNO)

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C.-A., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM, QNO

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1O60 \| pdb_00001o60	Download File View File

Crystal structure of KDO-8-phosphate synthase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	2-dehydro-3-deoxyphosphooctonate aldolase (protein)

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1O61 \| pdb_00001o61	Download File View File

Crystal structure of a PLP-dependent enzyme with PLP

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Campylobacter jejuni
Macromolecule	aminotransferase (protein)
Unique Ligands	ACT, PLP

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1O62 \| pdb_00001o62	Download File View File

Crystal structure of the apo form of a PLP-dependent enzyme

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Campylobacter jejuni
Macromolecule	aminotransferase (protein)
Unique Ligands	ACT, BME

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1O63 \| pdb_00001o63	Download File View File

Crystal structure of an ATP phosphoribosyltransferase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	ATP phosphoribosyltransferase (protein)

1 to 25 of 419 Structures

Page 1 of 17

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

149D | pdb_0000149d

1AC3 | pdb_00001ac3

1CX5 | pdb_00001cx5

1INN | pdb_00001inn

1J6V | pdb_00001j6v

1J6W | pdb_00001j6w

1J6X | pdb_00001j6x

1K5I | pdb_00001k5i

1KVH | pdb_00001kvh

1L0L | pdb_00001l0l

1L0N | pdb_00001l0n

1MDO | pdb_00001mdo

1MDX | pdb_00001mdx

1MDZ | pdb_00001mdz

1MP7 | pdb_00001mp7

1NOQ | pdb_00001noq

1NP5 | pdb_00001np5

1NTK | pdb_00001ntk

1NTM | pdb_00001ntm

1NTZ | pdb_00001ntz

1NU1 | pdb_00001nu1

1O60 | pdb_00001o60

1O61 | pdb_00001o61

1O62 | pdb_00001o62

1O63 | pdb_00001o63