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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Rao, V.B."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Tequatrovirus T4 (11)
	Escherichia phage RB69 (2)
	Escherichia phage T4 (2)
	Escherichia phage RB49 (1)

Taxonomy

Duplodnaviria (16)

Experimental Method

	ELECTRON MICROSCOPY (11)
	X-RAY DIFFRACTION (5)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (5)
	3.5 - 4.0 (2)
	> 4.5 (5)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (6)
	2015 - 2019 (2)
	2020 - 2024 (6)

Symmetry Type

	Asymmetric (5)
	Cyclic (9)
	Dihedral (1)
	Icosahedral (1)

AllSelected

1 to 16 of 16 Structures

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3IG9 \| pdb_00003ig9	Download File View File

Small outer capsid protein (SOC) of bacteriophage RB69

Li, Q., Fokine, A., O'Donnell, E., Rao, V.B., Rossmann, M.G.

(2010) J Mol Biology 395: 728-741

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia phage RB69
Macromolecule	Soc small outer capsid protein (protein)
Unique Ligands	IMD

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3IGE \| pdb_00003ige	Download File View File

Small outer capsid protein (Soc) from bacteriophage RB69

Li, Q., Fokine, A., O'Donnell, E., Rao, V.B., Rossmann, M.G.

(2010) J Mol Biology 395: 728-741

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.254 Å
Organisms	Escherichia phage RB69
Macromolecule	Soc small outer capsid protein (protein)
Unique Ligands	IMD

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3J2M \| pdb_00003j2m	Download File View File

The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the extended T4 tail

Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A., Arisaka, F., Rao, V.B., Rossmann, M.G.

(2013) J Mol Biology 425: 1731-1744

Released	2013-03-06
Method	ELECTRON MICROSCOPY 15 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail connector protein Gp15 (protein) Tail sheath protein Gp18 (protein)

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3J2N \| pdb_00003j2n	Download File View File

The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the contracted T4 tail

Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A., Arisaka, F., Rao, V.B., Rossmann, M.G.

(2013) J Mol Biology 425: 1731-1744

Released	2013-03-06
Method	ELECTRON MICROSCOPY 16 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail connector protein Gp15 (protein) Tail sheath protein Gp18 (protein)

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3J2O \| pdb_00003j2o	Download File View File

Model of the bacteriophage T4 fibritin based on the cryo-EM reconstruction of the contracted T4 tail containing the phage collar and whiskers

Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A.A., Arisaka, F., Rao, V.B., Rossmann, M.G.

(2013) J Mol Biology 425: 1731-1744

Released	2013-03-06
Method	ELECTRON MICROSCOPY 25 Å
Organisms	Tequatrovirus T4
Macromolecule	Fibritin (protein)

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3JA7 \| pdb_00003ja7	Download File View File

Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution

Sun, L., Zhang, X., Gao, S., Rao, P.A., Padilla-Sanchez, V., Chen, Z., Sun, S., Xiang, Y., Subramaniam, S., Rao, V.B., Rossmann, M.G.

(2015) Nat Commun 6: 7548-7548

Released	2015-07-22
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Tequatrovirus T4
Macromolecule	Portal protein gp20 (protein)

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3SHS \| pdb_00003shs	Download File View File

Three N-terminal domains of the bacteriophage RB49 Highly Immunogenic Outer Capsid protein (Hoc)

Fokine, A., Islam, M.Z., Zhang, Z., Bowman, V.D., Rao, V.B., Rossmann, M.G.

(2011) J Virol 85: 8141-8148

Released	2011-06-29
Method	X-RAY DIFFRACTION 1.951 Å
Organisms	Escherichia phage RB49
Macromolecule	Hoc head outer capsid protein (protein)
Unique Ligands	MG

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4HUD \| pdb_00004hud	Download File View File

Structure of the bacteriophage T4 tail terminator protein, gp15.

Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A., Arisaka, F., Rao, V.B., Rossmann, M.G.

(2013) J Mol Biology 425: 1731-1744

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.7001 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail connector protein Gp15 (protein)

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4HUH \| pdb_00004huh	Download File View File

Structure of the bacteriophage T4 tail terminator protein, gp15 (C-terminal truncation mutant 1-261).

Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A., Arisaka, F., Rao, V.B., Rossmann, M.G.

(2013) J Mol Biology 425: 1731-1744

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail connector protein Gp15 (protein)

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5VF3 \| pdb_00005vf3	Download File View File

Bacteriophage T4 isometric capsid

Chen, Z., Sun, L., Zhang, Z., Fokine, A., Padilla-Sanchez, V., Hanein, D., Jiang, W., Rossmann, M.G., Rao, V.B.

(2017) Proc Natl Acad Sci U S A 114: E8184-E8193

Released	2017-09-13
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Tequatrovirus T4
Macromolecule	Capsid vertex protein gp24 (protein) Highly immunogenic outer capsid protein (protein) Major capsid protein (protein) Small outer capsid protein (protein)

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6UZC \| pdb_00006uzc	Download File View File

Portal vertex structure of bacteriophage T4

Fang, Q., Fokine, A., Rao, V.B.

(2020) Nat Commun 11: 1713-1713

Released	2020-04-29
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Tequatrovirus T4
Macromolecule	Major capsid protein (protein) Portal protein (protein)

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7VRT \| pdb_00007vrt	Download File View File

The unexpanded head structure of phage T4

Fang, Q., Tang, W., Fokine, A., Mahalingam, M., Shao, Q., Rossmann, M.G., Rao, V.B.

(2022) Proc Natl Acad Sci U S A 119: e2203272119-e2203272119

Released	2022-10-05
Method	ELECTRON MICROSCOPY 5.1 Å
Organisms	Tequatrovirus T4
Macromolecule	Capsid vertex protein (protein) Major capsid protein (protein)

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7VS5 \| pdb_00007vs5	Download File View File

The expanded head structure of phage T4

Fang, Q., Tang, W., Fokine, A., Mahalingam, M., Shao, Q., Rossmann, M.G., Rao, V.B.

(2022) Proc Natl Acad Sci U S A 119: e2203272119-e2203272119

Released	2022-10-05
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Tequatrovirus T4
Macromolecule	Capsid vertex protein (protein) Major capsid protein (protein) Small outer capsid protein (protein)

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8GMO \| pdb_00008gmo	Download File View File

Bacteriophage T4 capsid shell containing 9DE insertions into the gp23* major capsid protein subunits

Fokine, A., Rao, V.B.

(2023) Nat Commun 14: 2928-2928

Released	2023-05-10
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Tequatrovirus T4
Macromolecule	Mature capsid vertex protein (protein) Mature major capsid protein (protein)

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8T1X \| pdb_00008t1x	Download File View File

T4 highly immunogenic outer capsid protein C-terminal domain bound to the vertex-proximal gp23* capsomer of the isometric head in two preferred orientations

Fokine, A., Rao, V.B.

(2023) Viruses 15:

Released	2023-07-19
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Escherichia phage T4
Macromolecule	Highly immunogenic outer capsid protein (protein) Mature major capsid protein gp23* (protein)

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8T9R \| pdb_00008t9r	Download File View File

T4 highly immunogenic outer capsid protein C-terminal domain bound to a vertex-proximal gp23* capsomer of the prolate capsid in two preferred orientations.

Fokine, A., Rao, V.B.

(2023) Viruses 15:

Released	2023-07-19
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia phage T4
Macromolecule	Highly immunogenic outer capsid protein (protein) Mature major capsid protein (protein)

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3IG9 | pdb_00003ig9

Small outer capsid protein (SOC) of bacteriophage RB69

3IGE | pdb_00003ige

Small outer capsid protein (Soc) from bacteriophage RB69

3J2M | pdb_00003j2m

The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the extended T4 tail

3J2N | pdb_00003j2n

The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the contracted T4 tail

3J2O | pdb_00003j2o

Model of the bacteriophage T4 fibritin based on the cryo-EM reconstruction of the contracted T4 tail containing the phage collar and whiskers

3JA7 | pdb_00003ja7

Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution

3SHS | pdb_00003shs

Three N-terminal domains of the bacteriophage RB49 Highly Immunogenic Outer Capsid protein (Hoc)

4HUD | pdb_00004hud

Structure of the bacteriophage T4 tail terminator protein, gp15.

4HUH | pdb_00004huh

Structure of the bacteriophage T4 tail terminator protein, gp15 (C-terminal truncation mutant 1-261).

5VF3 | pdb_00005vf3

Bacteriophage T4 isometric capsid

6UZC | pdb_00006uzc

Portal vertex structure of bacteriophage T4

7VRT | pdb_00007vrt

The unexpanded head structure of phage T4

7VS5 | pdb_00007vs5

The expanded head structure of phage T4

8GMO | pdb_00008gmo

Bacteriophage T4 capsid shell containing 9DE insertions into the gp23* major capsid protein subunits

8T1X | pdb_00008t1x

T4 highly immunogenic outer capsid protein C-terminal domain bound to the vertex-proximal gp23* capsomer of the isometric head in two preferred orientations

8T9R | pdb_00008t9r

T4 highly immunogenic outer capsid protein C-terminal domain bound to a vertex-proximal gp23* capsomer of the prolate capsid in two preferred orientations.

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

3IG9 | pdb_00003ig9

3IGE | pdb_00003ige

3J2M | pdb_00003j2m

3J2N | pdb_00003j2n

3J2O | pdb_00003j2o

3JA7 | pdb_00003ja7

3SHS | pdb_00003shs

4HUD | pdb_00004hud

4HUH | pdb_00004huh

5VF3 | pdb_00005vf3

6UZC | pdb_00006uzc

7VRT | pdb_00007vrt

7VS5 | pdb_00007vs5

8GMO | pdb_00008gmo

8T1X | pdb_00008t1x

8T9R | pdb_00008t9r