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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sacchettini, J."

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Legionella pneumophila (12)
	Helicobacter pylori (8)
	Homo sapiens (4)
	Pseudomonas putida F1 (3)
	Helicobacter pylori 26695 (2)

Taxonomy

	Bacteria (25)
	Eukaryota (4)

Experimental Method

	ELECTRON MICROSCOPY (23)
	X-RAY DIFFRACTION (6)

Polymer Entity Type

Protein (29)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (1)
	2.5 - 3.0 (4)
	3.0 - 3.5 (4)
	3.5 - 4.0 (11)
	4.0 - 4.5 (1)
	> 4.5 (5)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (11)
	2020 - 2024 (17)

Enzyme Classification Name

	Ligases (3)
	Transferases (3)

Membrane Protein Annotation

	mpstruc (6)
	OPM (2)

Symmetry Type

	Cyclic (19)
	Asymmetric (10)

AllSelected

1 to 25 of 29 Structures

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4BVX \| pdb_00004bvx	Download File View File

Crystal structure of the AIMP3-MRS N-terminal domain complex with I3C

Cho, H.Y., Seo, W.W., Cho, H.J., Kang, B.S.

(2015) J Biological Chem 290: 29313

Released	2014-07-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1 (protein) METHIONINE--TRNA LIGASE, CYTOPLASMIC (protein)
Unique Ligands	I3C

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5A34 \| pdb_00005a34	Download File View File

The crystal structure of the GST-like domains complex of EPRS-AIMP2

Cho, H.Y., Kang, B.S.

(2015) J Biological Chem 290: 29313

Released	2015-10-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	AMINOACYL TRNA SYNTHASE COMPLEX-INTERACTING MULTIFUNCTIONAL PROTEIN 2 (protein) BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE (protein)
Unique Ligands	GOL

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5BMU \| pdb_00005bmu	Download File View File

The crystal structure of the GST-like domains complex of AIMP3-EPRS mutant C92SC105SC123S

Cho, H.J., Kang, B.S.

(2015) J Biological Chem 290: 29313-29328

Released	2015-10-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation elongation factor 1 epsilon-1 (protein) Glutamate--tRNA ligase (protein)

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5HWT \| pdb_00005hwt	Download File View File

Crystal structure of apo-PAS1

Hwang, J., Koh, S.

(2016) J Biological Chem 291: 8575-8590

Released	2016-03-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas putida F1
Macromolecule	Sensor histidine kinase TodS (protein)

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5HWV \| pdb_00005hwv	Download File View File

Crystal structure of PAS1 complexed with toluene

Hwang, J., Koh, S.

(2016) J Biological Chem 291: 8575-8590

Released	2016-03-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pseudomonas putida F1
Macromolecule	Sensor histidine kinase TodS (protein)
Unique Ligands	MBN

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5HWW \| pdb_00005hww	Download File View File

Crystal structure of PAS1 complexed with 1,2,4-TMB

Hwang, J., Koh, S.

(2016) J Biological Chem 291: 8575-8590

Released	2016-03-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas putida F1
Macromolecule	Sensor histidine kinase TodS (protein)
Unique Ligands	XBZ

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6ODI \| pdb_00006odi	Download File View File

Structure of CagY from a cryo-EM reconstruction of a T4SS

Chung, J.M., Sheedlo, M.J., Campbell, A., Sawhney, N., Frick-Cheng, A.E., Lacy, D.B., Cover, T.L., Ohi, M.D.

(2019) Elife 8:

Released	2019-07-03
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Helicobacter pylori
Macromolecule	Type IV secretion system apparatus protein CagY (protein)

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6ODJ \| pdb_00006odj	Download File View File

PolyAla Model of the PRC from the Type 4 Secretion System of H. pylori

Chung, J.M., Sheedlo, M.J., Campbell, A., Sawhney, N., Frick-Cheng, A.E., Lacy, D.B., Cover, T.L., Ohi, M.D.

(2019) Elife 8:

Released	2019-07-03
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Helicobacter pylori
Macromolecule	PolyAla Model of PRC from H.pylori (protein)

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6OEE \| pdb_00006oee	Download File View File

Structure of CagT from a cryo-EM reconstruction of a T4SS

Chung, J.M., Sheedlo, M.J., Campbell, A., Sawhney, N., Frick-Cheng, A.E., Lacy, D.B., Cover, T.L., Ohi, M.D.

(2019) Elife 8:

Released	2019-07-03
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Helicobacter pylori
Macromolecule	Type IV secretion system apparatus protein CagT (protein)

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6OEF \| pdb_00006oef	Download File View File

PolyAla Model of the O-layer from the Type 4 Secretion System of H. pylori

Chung, J.M., Sheedlo, M.J., Campbell, A., Sawhney, N., Frick-Cheng, A.E., Lacy, D.B., Cover, T.L., Ohi, M.D.

(2019) Elife 8:

Released	2019-07-03
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Helicobacter pylori
Macromolecule	PolyAla Model of OMCC O-Layer (protein)

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6OEG \| pdb_00006oeg	Download File View File

Structure of CagX from a cryo-EM reconstruction of a T4SS

Chung, J.M., Sheedlo, M.J., Campbell, A., Sawhney, N., Frick-Cheng, A.E., Lacy, D.B., Cover, T.L., Ohi, M.D.

(2019) Elife 8:

Released	2019-07-03
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Helicobacter pylori
Macromolecule	Type IV secretion system apparatus protein CagX (protein)

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6OEH \| pdb_00006oeh	Download File View File

PolyAla Model of OMCC I-Layer

Chung, J.M., Sheedlo, M.J., Campbell, A., Sawhney, N., Frick-Cheng, A.E., Lacy, D.B., Cover, T.L., Ohi, M.D.

(2019) Elife 8:

Released	2019-07-03
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Helicobacter pylori
Macromolecule	PolyAla Model of OMCC I-Layer (protein)

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6X62 \| pdb_00006x62	Download File View File

Legionella pneumophila Dot T4SS OMC

Durie, C.L., Sheedlo, M.J., Chung, J.M., Byrne, B.G., Su, M., Knight, T., Swanson, M.S., Lacy, D.B., Ohi, M.D.

(2020) Elife 9:

Released	2020-09-30
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Legionella pneumophila
Macromolecule	DotC (protein) DotD (protein) Inner membrane lipoprotein YiaD (protein) Type IV secretion protein IcmK (protein) Type IV secretion system unknown protein fragment (protein)

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6X64 \| pdb_00006x64	Download File View File

Legionella pneumophila Dot T4SS PR

Durie, C.L., Sheedlo, M.J., Chung, J.M., Byrne, B.G., Su, M., Knight, T., Swanson, M.S., Lacy, D.B., Ohi, M.D.

(2020) Elife 9:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Legionella pneumophila
Macromolecule	Type IV secretion system unknown protein fragment (protein)

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6X65 \| pdb_00006x65	Download File View File

Legionella pneumophila Dot/Icm T4SS

Durie, C.L., Sheedlo, M.J., Chung, J.M., Byrne, B.G., Su, M., Knight, T., Swanson, M.S., Lacy, D.B., Ohi, M.D.

(2020) Elife 9:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Legionella pneumophila
Macromolecule	Unique protein chains: 6

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6X66 \| pdb_00006x66	Download File View File

Legionella pneumophila dDot T4SS OMC

Durie, C.L., Sheedlo, M.J., Chung, J.M., Byrne, B.G., Su, M., Knight, T., Swanson, M.S., Lacy, D.B., Ohi, M.D.

(2020) Elife 9:

Released	2020-10-28
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Legionella pneumophila
Macromolecule	Unique protein chains: 6

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6X6J \| pdb_00006x6j	Download File View File

Cryo-EM Structure of CagX and CagY within the Helicobacter pylori PR

Sheedlo, M.J., Chung, J.M., Sawhney, N., Durie, C.L., Cover, T.L., Ohi, M.D., Lacy, D.B.

(2020) Elife 9:

Released	2020-09-30
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Helicobacter pylori 26695
Macromolecule	Cag pathogenicity island protein (Cag7) (protein) Cag pathogenicity island protein (Cag8) (protein)

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6X6K \| pdb_00006x6k	Download File View File

Cryo-EM Structure of the Helicobacter pylori dCag3 OMC

Sheedlo, M.J., Chung, J.M., Sawhney, N., Durie, C.L., Cover, T.L., Ohi, M.D., Lacy, D.B.

(2020) Elife 9:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Helicobacter pylori
Macromolecule	Cag pathogenicity island protein (protein) Cag pathogenicity island protein (Cag7) (protein) Type IV secretion system apparatus protein CagX (protein)

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6X6L \| pdb_00006x6l	Download File View File

Cryo-EM Structure of CagX and CagY within the dCag3 Helicobacter pylori PR

Sheedlo, M.J., Chung, J.M., Sawhney, N., Durie, C.L., Cover, T.L., Ohi, M.D., Lacy, D.B.

(2020) Elife 9:

Released	2020-09-30
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Helicobacter pylori 26695
Macromolecule	Cag pathogenicity island protein (Cag7) (protein) Cag pathogenicity island protein (Cag8) (protein)

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6X6S \| pdb_00006x6s	Download File View File

Cryo-EM Structure of the Helicobacter pylori OMC

Sheedlo, M.J., Chung, J.M., Sawhney, N., Durie, C.L., Cover, T.L., Ohi, M.D., Lacy, D.B.

(2020) Elife 9:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Helicobacter pylori
Macromolecule	Unique protein chains: 6

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7MUC \| pdb_00007muc	Download File View File

Legionella pneumophila Dot/Icm T4SS C1 Reconstruction

Sheedlo, M.J., Durie, C.L., Swanson, M., Lacy, D.B., Ohi, M.D.

(2021) Elife 10:

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Legionella pneumophila
Macromolecule	Unique protein chains: 11

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7MUD \| pdb_00007mud	Download File View File

Legionella pneumophila Dot/Icm T4SS OMC

Sheedlo, M.J., Durie, C.L., Swanson, M., Lacy, D.B., Ohi, M.D.

(2021) Elife 10:

Released	2021-10-06
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Legionella pneumophila
Macromolecule	Unique protein chains: 9

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7MUE \| pdb_00007mue	Download File View File

Legionella pneumophila Dot/Icm T4SS PR

Sheedlo, M.J., Durie, C.L., Swanson, M., Lacy, D.B., Ohi, M.D.

(2021) Elife 10:

Released	2021-10-06
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Legionella pneumophila
Macromolecule	DotF (protein) IcmE protein (protein) Type IV secretion protein IcmK (protein) Unknown protein fragment (protein)