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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Saha, S."

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Search Summary

This query matches 52 Structures.

Refinements

Structure Determination Methodology

experimental (52)

Scientific Name of Source Organism

	Homo sapiens (35)
	Pyrococcus horikoshii OT3 (14)
	Mus musculus (11)
	Pseudomonas aeruginosa PAO1 (2)
	Arabidopsis thaliana (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (36)
	Archaea (14)
	Bacteria (2)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (29)
	ELECTRON MICROSCOPY (22)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (52)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (14)
	2.5 - 3.0 (10)
	3.0 - 3.5 (19)
	3.5 - 4.0 (6)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (13)
	2015 - 2019 (1)
	2020 - 2024 (15)
	2025 - 2029 (22)

Enzyme Classification Name

	Transferases (18)
	Hydrolases (23)

Membrane Protein Annotation

	PDBTM (18)
	MemProtMD (11)
	mpstruc (2)

Symmetry Type

	Asymmetric (40)
	Cyclic (11)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (11)
	Alpha and beta proteins (a/b) (2)
	Small proteins (1)

AllSelected

1 to 25 of 52 Structures

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1HJ7 \| pdb_00001hj7	Download File View File

NMR study of a pair of LDL receptor Ca2+ binding epidermal growth factor-like domains, 20 structures

Saha, S., Handford, P.A., Campbell, I.D., Downing, A.K.

(2001) Structure 9: 451

Released	2001-07-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	LDL RECEPTOR (protein)
Unique Ligands	CA

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2YBO \| pdb_00002ybo	Download File View File

The x-ray structure of the SAM-dependent uroporphyrinogen III methyltransferase NirE from Pseudomonas aeruginosa in complex with SAH

Storbeck, S., Saha, S., Krausze, J., Klink, B.U., Heinz, D.W., Layer, G.

(2011) J Biological Chem 286: 26754

Released	2011-06-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	METHYLTRANSFERASE (protein)
Unique Ligands	SAH

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2YBQ \| pdb_00002ybq	Download File View File

The x-ray structure of the SAM-dependent uroporphyrinogen III methyltransferase NirE from Pseudomonas aeruginosa in complex with SAH and uroporphyrinogen III

Storbeck, S., Saha, S., Krausze, J., Klink, B.U., Heinz, D.W., Layer, G.

(2011) J Biological Chem 286: 26754

Released	2011-06-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	METHYLTRANSFERASE (protein)
Unique Ligands	SAH, UP2

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4AHD \| pdb_00004ahd	Download File View File

Q12L - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

Thiyagarajan, N., Ferguson, R., Saha, S., Pham, T., Subramanian, V., Acharya, K.R.

(2012) Nat Commun 3: 1121

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)

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4AHE \| pdb_00004ahe	Download File View File

K17I - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

Thiyagarajan, N., Ferguson, R., Saha, S., Pham, T., Subramanian, V., Acharya, K.R.

(2012) Nat Commun 3: 1121

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	TLA

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4AHF \| pdb_00004ahf	Download File View File

K17E - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

Thiyagarajan, N., Ferguson, R., Saha, S., Pham, T., Subramanian, V., Acharya, K.R.

(2012) Nat Commun 3: 1121

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.115 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	EDO, SO4

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4AHG \| pdb_00004ahg	Download File View File

S28N - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

Thiyagarajan, N., Ferguson, R., Saha, S., Pham, T., Subramanian, V., Acharya, K.R.

(2012) Nat Commun 3: 1121

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.448 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	TAR

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4AHH \| pdb_00004ahh	Download File View File

R31K - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

Thiyagarajan, N., Ferguson, R., Saha, S., Pham, T., Subramanian, V., Acharya, K.R.

(2012) Nat Commun 3: 1121

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.498 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	TLA

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4AHI \| pdb_00004ahi	Download File View File

K40I - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

Thiyagarajan, N., Ferguson, R., Saha, S., Pham, T., Subramanian, V., Acharya, K.R.

(2012) Nat Commun 3: 1121

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.798 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)

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4AHJ \| pdb_00004ahj	Download File View File

I46V - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

Thiyagarajan, N., Ferguson, R., Saha, S., Pham, T., Subramanian, V., Acharya, K.R.

(2012) Nat Commun 3: 1121

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.032 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	TAR

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4AHK \| pdb_00004ahk	Download File View File

K54E - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

Thiyagarajan, N., Ferguson, R., Saha, S., Pham, T., Subramanian, V., Acharya, K.R.

(2012) Nat Commun 3: 1121

Released	2012-10-10
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	TAR

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4AHL \| pdb_00004ahl	Download File View File

P112L - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

Thiyagarajan, N., Ferguson, R., Saha, S., Pham, T., Subramanian, V., Acharya, K.R.

(2012) Nat Commun 3: 1121

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.053 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	TLA

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4AHM \| pdb_00004ahm	Download File View File

V113I - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

Thiyagarajan, N., Ferguson, R., Saha, S., Pham, T., Subramanian, V., Acharya, K.R.

(2012) Nat Commun 3: 1121

Released	2012-10-10
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	TLA

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4AHN \| pdb_00004ahn	Download File View File

R121H - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

Thiyagarajan, N., Ferguson, R., Saha, S., Pham, T., Subramanian, V., Acharya, K.R.

(2012) Nat Commun 3: 1121

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.977 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	CL

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5G2R \| pdb_00005g2r	Download File View File

Crystal structure of the Mo-insertase domain Cnx1E from Arabidopsis thaliana

Krausze, J., Saha, S., Probst, C., Kruse, T., Heinz, D.W., Mendel, R.R.

(2017) Biochem J 474: 163

Released	2017-02-15
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Arabidopsis thaliana
Macromolecule	MOLYBDOPTERIN BIOSYNTHESIS PROTEIN CNX1 (protein)
Unique Ligands	GOL, MG, SO4

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7URY \| pdb_00007ury	Download File View File

Tetradecameric hub domain of CaMKII beta

Ozden, C., Saha, S., Samkutty, A., Stratton, M.M., Garman, S.C., Perry, S.L.

(2023) Lab Chip 23: 2075-2090

Released	2022-05-11
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Homo sapiens
Macromolecule	Calcium/calmodulin-dependent protein kinase type II subunit beta (protein)
Unique Ligands	MLT

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8HPT \| pdb_00008hpt	Download File View File

Structure of C5a-pep bound mouse C5aR1 in complex with Go

Saha, S., Maharana, J., Yadav, M.K., Sarma, P., Chami, M., Banerjee, R., Shukla, A.K.

(2023) Cell 186: 4956-4973.e21

Released	2023-10-18
Method	ELECTRON MICROSCOPY 3.39 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Unique protein chains: 6

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8HQC \| pdb_00008hqc	Download File View File

Structure of a GPCR-G protein in complex with a natural peptide agonist

Saha, S., Maharana, J., Yadav, M.K., Sarma, P., Chami, M., Banerjee, R., Shukla, A.K.

(2023) Cell 186: 4956-4973.e21

Released	2023-10-18
Method	ELECTRON MICROSCOPY 3.89 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Unique protein chains: 6

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8JPS \| pdb_00008jps	Download File View File

Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Composite map)

Banerjee, R., Khanppnavar, B., Maharana, J., Saha, S., Korkhov, V.M., Shukla, A.K.

(2024) Cell 187: 4751-4769.e25

Released	2024-07-31
Method	ELECTRON MICROSCOPY 3.65 Å
Organisms	Homo sapiens
Macromolecule	Atypical chemokine receptor 1 (protein) C-C motif chemokine 7 (protein)

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8X41 \| pdb_00008x41	Download File View File

Crystal structure of DIMT1 in complex with 5'-methylthioadenosine and adenosine from Pyrococcus horikoshii

Saha, S., Mandal, S.K., Dutta, A., Kanaujia, S.P.

(2024) Structure 32: 1760-1775.e7

Released	2024-08-28
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Probable ribosomal RNA small subunit methyltransferase A (protein)
Unique Ligands	ACT, ADN, ARG, CL, EDO, GOL, MTA, PEG, SO3, ZN

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8X44 \| pdb_00008x44	Download File View File

Crystal structure of DIMT1 in complex with 5'-methylthioadenosine from Pyrococcus horikoshii (FormI)

Saha, S., Kanaujia, S.P.

(2024) Structure 32: 1760-1775.e7

Released	2024-08-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Probable ribosomal RNA small subunit methyltransferase A (protein)
Unique Ligands	CL, EDO, GOL, MTA, PEG, SO3, ZN

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8X45 \| pdb_00008x45	Download File View File

Crystal structure of DIMT1 in complex with 5'-methylthioadenosine from Pyrococcus horikoshii (FormII)

Saha, S., Kanaujia, S.P.

(2024) Structure 32: 1760-1775.e7

Released	2024-08-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Probable ribosomal RNA small subunit methyltransferase A (protein)
Unique Ligands	ACT, EDO, GOL, MTA, PEG, PGE, SO3, ZN

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8X46 \| pdb_00008x46	Download File View File

Crystal structure of DIMT1 in complex with adenosylornithine (SFG) from Pyrococcus horikoshii

Saha, S., Kanaujia, S.P.

(2024) Structure 32: 1760-1775.e7

Released	2024-08-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Probable ribosomal RNA small subunit methyltransferase A (protein)
Unique Ligands	ARG, CL, EDO, PEG, SFG, SO3, ZN

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8X47 \| pdb_00008x47	Download File View File

Crystal structure of DIMT1 in complex with S-adenosyl-L-homocysteine (SAH) from Pyrococcus horikoshii

Saha, S., Dutta, A., Kanaujia, S.P.

(2024) Structure 32: 1760-1775.e7

Released	2024-08-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Probable ribosomal RNA small subunit methyltransferase A (protein)
Unique Ligands	ARG, EDO, GOL, PEG, PGE, SAH, SO3, ZN

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8X4G \| pdb_00008x4g	Download File View File

Crystal structure of the D117A mutant of DIMT1 from Pyrococcus horikoshii

Saha, S., Kanaujia, S.P.

(2024) Structure 32: 1760-1775.e7

Released	2024-08-28
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Probable ribosomal RNA small subunit methyltransferase A (protein)

1 to 25 of 52 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1HJ7 | pdb_00001hj7

2YBO | pdb_00002ybo

2YBQ | pdb_00002ybq

4AHD | pdb_00004ahd

4AHE | pdb_00004ahe

4AHF | pdb_00004ahf

4AHG | pdb_00004ahg

4AHH | pdb_00004ahh

4AHI | pdb_00004ahi

4AHJ | pdb_00004ahj

4AHK | pdb_00004ahk

4AHL | pdb_00004ahl

4AHM | pdb_00004ahm

4AHN | pdb_00004ahn

5G2R | pdb_00005g2r

7URY | pdb_00007ury

8HPT | pdb_00008hpt

8HQC | pdb_00008hqc

8JPS | pdb_00008jps

8X41 | pdb_00008x41

8X44 | pdb_00008x44

8X45 | pdb_00008x45

8X46 | pdb_00008x46

8X47 | pdb_00008x47

8X4G | pdb_00008x4g