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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sandri-Goldin, R.M."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Homo sapiens (9)
	Bacillus thuringiensis (4)
	Mus musculus (4)
	Escherichia coli O157 (2)
	Saccharomyces cerevisiae (2)
	human gammaherpesvirus 4 (2)
	Escherichia coli DH5[alpha] (1)
	Escherichia coli K-12 (1)
	Escherichia coli O157:H7 str. SS52 (1)
	Human herpesvirus 4 strain B95-8 (1)

More...

Taxonomy

	Eukaryota (15)
	Bacteria (11)
	Duplodnaviria (3)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (23)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

	Protein (27)
	DNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (10)
	3.0 - 3.5 (6)
	3.5 - 4.0 (2)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	2010 - 2014 (15)
	2015 - 2019 (7)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (4)
	Oxidoreductases (3)
	Transferases (2)
	Lyases (1)

Symmetry Type

	Cyclic (15)
	Asymmetric (9)
	Dihedral (5)

SCOP Classification

	All alpha proteins (3)
	Alpha and beta proteins (a/b) (3)
	Alpha and beta proteins (a+b) (3)
	All beta proteins (1)

AllSelected

1 to 25 of 27 Structures

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3OEQ \| pdb_00003oeq	Download File View File

Crystal structure of trimeric frataxin from the yeast Saccharomyces cerevisiae, with full length n-terminus

Soderberg, C.A.G., Rajan, S., Gakh, O., Ta, C., Isaya, G., Al-Karadaghi, S.

(2011) J Mol Biology 414: 783-797

Released	2011-08-24
Method	X-RAY DIFFRACTION 2.96 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Frataxin homolog, mitochondrial (protein)

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3OER \| pdb_00003oer	Download File View File

Crystal structure of trimeric frataxin from the yeast saccharomyces cerevisiae, complexed with cobalt

Soderberg, C.A.G., Rajan, S., Gakh, O., Ta, C., Isaya, G., Al-Karadaghi, S.

(2011) J Mol Biology 414: 783-797

Released	2011-08-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Frataxin homolog, mitochondrial (protein)
Unique Ligands	CO

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3QS7 \| pdb_00003qs7	Download File View File

Crystal structure of a human Flt3 ligand-receptor ternary complex

Verstraete, K., Savvides, S.N.

(2011) Blood 118: 60-68

Released	2011-03-16
Method	X-RAY DIFFRACTION 4.3 Å
Organisms	Homo sapiens
Macromolecule	FL cytokine receptor (protein) SL cytokine (protein)
Unique Ligands	NAG

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3QS9 \| pdb_00003qs9	Download File View File

Crystal structure of a human Flt3 ligand-receptor ternary complex

Verstraete, K., Savvides, S.N.

(2011) Blood 118: 60-68

Released	2011-03-16
Method	X-RAY DIFFRACTION 7.8 Å
Organisms	Homo sapiens
Macromolecule	FL cytokine receptor (protein) SL cytokine (protein)

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3T06 \| pdb_00003t06	Download File View File

Crystal Structure of the DH/PH fragment of PDZRHOGEF with N-terminal regulatory elements in complex with Human RhoA

Bielnicki, J.A., Derewenda, U., Derewenda, Z.S.

(2011) J Biological Chem 286: 35163-35175

Released	2011-08-03
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Homo sapiens
Macromolecule	Rho guanine nucleotide exchange factor 11 (protein) Transforming protein RhoA (protein)

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3UEZ \| pdb_00003uez	Download File View File

Crystal structure of the human Colony-Stimulating Factor 1 (hCSF-1) cytokine in complex with the viral receptor BARF1

Elegheert, J., Bracke, N., Savvides, S.N.

(2012) Nat Struct Mol Biol 19: 938-947

Released	2012-08-22
Method	X-RAY DIFFRACTION 3.414 Å
Organisms	Homo sapiens Human herpesvirus 4 strain B95-8
Macromolecule	Macrophage colony-stimulating factor 1 (protein) Secreted protein BARF1 (protein)
Unique branched monosaccharides	BMA, NAG

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3UF2 \| pdb_00003uf2	Download File View File

Crystal structure of the human Colony-Stimulating Factor 1 (hCSF-1) cytokine

Elegheert, J., Savvides, S.N.

(2012) Nat Struct Mol Biol 19: 938-947

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Macrophage colony-stimulating factor 1 (protein)

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3UF5 \| pdb_00003uf5	Download File View File

Crystal structure of the mouse Colony-Stimulating Factor 1 (mCSF-1) cytokine

Elegheert, J., Bracke, N., Bekaert, A., Savvides, S.N.

(2012) Nat Struct Mol Biol 19: 938-947

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	Macrophage colony-stimulating factor 1 (protein)
Unique Ligands	CA

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4ADF \| pdb_00004adf	Download File View File

CRYSTAL STRUCTURE OF THE HUMAN COLONY-STIMULATING FACTOR 1 (hCSF-1) CYTOKINE IN COMPLEX WITH THE VIRAL RECEPTOR BARF1

Elegheert, J., Bracke, N., Savvides, S.N.

(2012) Nat Struct Mol Biol 19: 938

Released	2012-08-22
Method	X-RAY DIFFRACTION 4.4 Å
Organisms	Homo sapiens human gammaherpesvirus 4
Macromolecule	MACROPHAGE COLONY-STIMULATING FACTOR 1 (protein) SECRETED PROTEIN BARF1 (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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4ADQ \| pdb_00004adq	Download File View File

CRYSTAL STRUCTURE OF THE MOUSE COLONY-STIMULATING FACTOR 1 (MCSF-1) CYTOKINE IN COMPLEX WITH THE VIRAL RECEPTOR BARF1

Elegheert, J., Bracke, N., Savvides, S.N.

(2012) Nat Struct Mol Biol 19: 938

Released	2012-08-22
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Mus musculus human gammaherpesvirus 4
Macromolecule	MACROPHAGE COLONY-STIMULATING FACTOR 1 (protein) SECRETED PROTEIN BARF1 (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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4EC2 \| pdb_00004ec2	Download File View File

Crystal structure of trimeric frataxin from the yeast Saccharomyces cerevisiae, complexed with ferrous

Soderberg, C.A.G., Rajan, S., Gakh, O., Isaya, G., Al-Karadaghi, S.

(2013) J Biological Chem 288: 8156-8167

Released	2013-01-30
Method	X-RAY DIFFRACTION 3.002 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Frataxin homolog, mitochondrial (protein)
Unique Ligands	FE2

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4EPC \| pdb_00004epc	Download File View File

Crystal structure of Autolysin repeat domains from Staphylococcus epidermidis

Zoll, S., Stehle, T.

(2012) J Bacteriol 194: 3789-3802

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Staphylococcus epidermidis
Macromolecule	N-acetylmuramoyl-L-alanine amidase (protein)

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4JUS \| pdb_00004jus	Download File View File

Crystal structure of a fragment of Human HSPB6

Weeks, S.D., Baranova, E.V., Beelen, S., Heirbaut, M., Gusev, N.B., Strelkov, S.V.

(2014) J Struct Biol 185: 342-354

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein beta-6 (protein)
Unique Ligands	GOL

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4JUT \| pdb_00004jut	Download File View File

Crystal structure of a mutant fragment of Human HSPB6

Weeks, S.D., Baranova, E.V., Beelen, S., Heirbaut, M., Gusev, N.B., Strelkov, S.V.

(2014) J Struct Biol 185: 342-354

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.196 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein beta-6 (protein)
Unique Ligands	GOL

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4OOJ \| pdb_00004ooj	Download File View File

Crystal structure of the N-terminal domain of the Legionella pneumophila protein SidC at 2.4A resolution

Gazdag, E.M., Shoebel, S., Shkumatov, A.V., Goody, R.S., Itzen, A.

(2014) J Struct Biol 186: 188-194

Released	2014-02-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	SidC, interaptin (protein)
Unique Ligands	MG, PEG

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5A5C \| pdb_00005a5c	Download File View File

Structure of an engineered neuronal LRRTM2 adhesion molecule

Paatero, A., Rosti, K., Shkumatov, A.V., Brunello, C., Kysenius, K., Huttunen, H., Kajander, T.

(2016) Biochemistry 55: 914

Released	2016-02-03
Method	X-RAY DIFFRACTION 2.097 Å
Organisms	synthetic construct
Macromolecule	LRRTM (protein)

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5CW7 \| pdb_00005cw7	Download File View File

Crystal structure of the PaaA2-ParE2 antitoxin-toxin complex

Sterckx, Y.G.-J., Loris, R.

(2016) J Mol Biology 428: 1589-1603

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.827 Å
Organisms	Escherichia coli O157
Macromolecule	PAAA2 (protein) Plasmid stabilization protein ParE (protein)
Unique Ligands	GOL

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5CZE \| pdb_00005cze	Download File View File

Crystal structure of the PaaA2-ParE2 antitoxin-toxin complex

Loris, R., Sterckx, Y.G.J.

(2016) J Mol Biology 428: 1589-1603

Released	2016-08-24
Method	X-RAY DIFFRACTION 3.82 Å
Organisms	Escherichia coli O157:H7 str. SS52
Macromolecule	PaaA2 (protein) Plasmid stabilization protein ParE (protein)

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5CZF \| pdb_00005czf	Download File View File

Crystal structure of the PaaA2-ParE2 antitoxin-toxin complex

Loris, R., Sterckx, Y.G.J.

(2016) J Mol Biology 428: 1589-1603

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.671 Å
Organisms	Escherichia coli O157
Macromolecule	PaaA2 (protein) Plasmid stabilization protein ParE (protein)
Unique Ligands	SO4

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5M04 \| pdb_00005m04	Download File View File

Structure of ObgE from Escherichia coli

Gkekas, S., Singh, R.K., Versees, W.

(2017) J Biological Chem 292: 5871-5883

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	GTPase ObgE/CgtA (protein)
Unique Ligands	GDP, MG

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5OHG \| pdb_00005ohg	Download File View File

enolase in complex with RNase E

Du, D., Luisi, B.F.

(2018) Nucleic Acids Res 46: 387-402

Released	2017-07-26
Method	X-RAY DIFFRACTION 1.997 Å
Organisms	Escherichia coli K-12
Macromolecule	Enolase (protein) Ribonuclease E (protein)
Unique Ligands	MG, NA, PO4

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6F2O \| pdb_00006f2o	Download File View File

Crystal structure of mouse SALM5 adhesion protein extracellular LRR-Ig domain fragment

Karki, S., Paudel, P., Sele, C., Kajander, T.

(2018) Protein Eng Des Sel 31: 147-157

Released	2018-06-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus
Macromolecule	Leucine-rich repeat and fibronectin type-III domain-containing protein 5 (protein)

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6TL8 \| pdb_00006tl8	Download File View File

Structural basis of SALM3 dimerization and adhesion complex formation with the presynaptic receptor protein tyrosine phosphatases

Karki, S., Shkumatov, A.V., Bae, S., Ko, J., Kajander, T.

(2020) Sci Rep 10: 11557-11557

Released	2020-07-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Myeloid cell surface antigen CD33,Leucine-rich repeat and fibronectin type-III domain-containing protein 4 (protein)
Unique Ligands	NAG

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7QD4 \| pdb_00007qd4	Download File View File

Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in complex with 100 bp long transposon end DNA

Shkumatov, A.V., Oger, C.A., Aryanpour, N., Hallet, B.F., Efremov, R.G.

(2022) Nat Commun 13: 6155-6155

Released	2022-10-26
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Bacillus thuringiensis
Macromolecule	Transposase for transposon Tn4430 (protein) IR100 DNA substrate, none transferred strand (nucleic acid) IR100 DNA substrate, transferred strand (nucleic acid)

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7QD5 \| pdb_00007qd5	Download File View File

Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in complex with 48 bp long transposon end DNA

Shkumatov, A.V., Oger, C.A., Aryanpour, N., Hallet, B.F., Efremov, R.G.

(2022) Nat Commun 13: 6155-6155

Released	2022-10-26
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Bacillus thuringiensis
Macromolecule	Transposase for transposon Tn4430 (protein) IR48 DNA substrate, non transferred strand (nucleic acid) IR48 transferred strand (nucleic acid)

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3OEQ | pdb_00003oeq

3OER | pdb_00003oer

3QS7 | pdb_00003qs7

3QS9 | pdb_00003qs9

3T06 | pdb_00003t06

3UEZ | pdb_00003uez

3UF2 | pdb_00003uf2

3UF5 | pdb_00003uf5

4ADF | pdb_00004adf

4ADQ | pdb_00004adq

4EC2 | pdb_00004ec2

4EPC | pdb_00004epc

4JUS | pdb_00004jus

4JUT | pdb_00004jut

4OOJ | pdb_00004ooj

5A5C | pdb_00005a5c

5CW7 | pdb_00005cw7

5CZE | pdb_00005cze

5CZF | pdb_00005czf

5M04 | pdb_00005m04

5OHG | pdb_00005ohg

6F2O | pdb_00006f2o

6TL8 | pdb_00006tl8

7QD4 | pdb_00007qd4

7QD5 | pdb_00007qd5