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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Tamura-Kawakami, K."

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Search Summary

This query matches 3 Structures.

Refinements

Structure Determination Methodology

experimental (3)

Scientific Name of Source Organism

	Aquifex aeolicus (1)
	Aquifex aeolicus VF5 (1)
	Homo sapiens (1)
	Mus musculus (1)

Taxonomy

	Bacteria (2)
	Eukaryota (2)

Experimental Method

	X-RAY DIFFRACTION (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (3)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	> 4.5 (1)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (1)

Enzyme Classification Name

Hydrolases (2)

Symmetry Type

Asymmetric (3)

SCOP Classification

All beta proteins (1)

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1 to 3 of 3 Structures

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3WKL \| pdb_00003wkl	Download File View File

The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus

Nogi, T., Tabata, S., Tamura-kawakami, K., Takagi, J.

(2013) Structure 22: 326-336

Released	2013-12-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Aquifex aeolicus
Macromolecule	Putative Zinc Metalloprotease AQ_1964 (protein)

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3WKM \| pdb_00003wkm	Download File View File

The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus in complex with the Fab fragment

Nogi, T., Tabata, S., Tamura-kawakami, K., Takagi, J.

(2013) Structure 22: 326-336

Released	2013-12-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aquifex aeolicus VF5 Mus musculus
Macromolecule	MOUSE IGG1-KAPPA FAB (HEAVY CHAIN) (protein) MOUSE IGG1-KAPPA FAB (LIGHT CHAIN) (protein) Putative zinc metalloprotease aq_1964 (protein)

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5GJE \| pdb_00005gje	Download File View File

Three-dimensional reconstruction of human LRP6 ectodomain complexed with Dkk1

Matoba, K., Mihara, E., Tamura-Kawakami, K., Hirai, H., Thompson, S., Iwasaki, K., Takagi, J.

(2017) Cell Rep 18: 32-40

Released	2017-01-18
Method	ELECTRON MICROSCOPY 21 Å
Organisms	Homo sapiens
Macromolecule	Dickkopf-related protein 1 (protein) Low-density lipoprotein receptor-related protein 6 (protein)
Unique Ligands	GOL, NAG, PO4
Unique branched monosaccharides	FUC, NAG

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3WKL | pdb_00003wkl

The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus

3WKM | pdb_00003wkm

The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus in complex with the Fab fragment

5GJE | pdb_00005gje

Three-dimensional reconstruction of human LRP6 ectodomain complexed with Dkk1

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3WKL | pdb_00003wkl

The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus

3WKM | pdb_00003wkm

The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus in complex with the Fab fragment

5GJE | pdb_00005gje

Three-dimensional reconstruction of human LRP6 ectodomain complexed with Dkk1