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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Tashiro, M."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (9)
	Aeromonas sobria (2)
	Staphylococcus aureus (2)
	Mus musculus (1)

Taxonomy

	Riboviria (9)
	Bacteria (4)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (10)
	SOLUTION NMR (4)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (2)
	2.5 - 3.0 (3)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2015 - 2019 (11)

Enzyme Classification Name

	Hydrolases (10)
	Transferases (1)

Symmetry Type

Asymmetric (14)

SCOP Classification

	Alpha and beta proteins (a/b) (9)
	Artifacts (9)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 14 of 14 Structures

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1MG8 \| pdb_00001mg8	Download File View File

NMR structure of ubiquitin-like domain in murine Parkin

Tashiro, M., Okubo, S., Shimotakahara, S., Hatanaka, H., Yasuda, H., Kainosho, M., Yokoyama, S., Shindo, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biomol NMR 25: 153-156

Released	2003-04-08
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Parkin (protein)

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1Q2N \| pdb_00001q2n	Download File View File

REFINED Solution NMR structure of the Z domain of STAPHYLOCOCCAL PROTEIN A

Zheng, D., Tashiro, M., Aramini, J.M., Montelione, G.T.

(2004) Protein Sci 13: 549-554

Released	2003-08-12
Method	SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	IMMUNOGLOBULIN G BINDING PROTEIN A (protein)

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2MK4 \| pdb_00002mk4	Download File View File

Solution structure of ORF2

Miyakawa, T., Kobayashi, H., Tashiro, M., Yamanaka, H., Tanokura, M.

(2015) J Biological Chem 290: 11130-11143

Released	2015-03-25
Method	SOLUTION NMR
Organisms	Aeromonas sobria
Macromolecule	Open reading frame 2 (protein)

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2SPZ \| pdb_00002spz	Download File View File

STAPHYLOCOCCAL PROTEIN A, Z-DOMAIN, NMR, 10 STRUCTURES

Montelione, G.T., Tashiro, M., Tejero, R., Lyons, B.A.

(1997) J Mol Biology 272: 573-590

Released	1998-08-05
Method	SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	IMMUNOGLOBULIN G BINDING PROTEIN A (protein)

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3WQB \| pdb_00003wqb	Download File View File

Crystal structure of aeromonas sobria serine protease (ASP) and the chaperone (ORF2) complex

Kobayashi, H., Yoshida, T., Miyakawa, T., Kato, R., Tashiro, M., Yamanaka, H., Tanokura, M., Tsuge, H.

(2015) J Biological Chem 290: 11130-11143

Released	2015-03-25
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Aeromonas sobria
Macromolecule	Extracellular serine protease (protein) Open reading frame 2 (protein)
Unique Ligands	CA

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4YYL \| pdb_00004yyl	Download File View File

Phenolic acid derivative bound to influenza strain H1N1 polymerase subunit PA endonuclease

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2015) Bioorg Med Chem 23: 5466-5475

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.905 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4KN, MN, SO4

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4ZHZ \| pdb_00004zhz	Download File View File

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region with expelling one of the metal ions in the active site

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-05-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4P8, MN, SO4

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4ZI0 \| pdb_00004zi0	Download File View File

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region without a chelation to the metal ions in the active site

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-05-13
Method	X-RAY DIFFRACTION 1.802 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4P9, MN, SO4

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4ZQQ \| pdb_00004zqq	Download File View File

Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein,Polymerase acidic protein (protein)
Unique Ligands	MN, SO4

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5FDD \| pdb_00005fdd	Download File View File

Endonuclease inhibitor 1 bound to influenza strain H1N1 polymerase acidic subunit N-terminal region at pH 7.0

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-12-30
Method	X-RAY DIFFRACTION 2.506 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein,Polymerase acidic protein (protein)
Unique Ligands	4P8, MN, SO4

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5FDG \| pdb_00005fdg	Download File View File

Endonuclease inhibitor 3 bound to influenza strain H1N1 polymerase acidic subunit N-terminal region at pH 7.0

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-12-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	0N8, MN, SO4

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5I13 \| pdb_00005i13	Download File View File

Endonuclease inhibitor 2 bound to influenza strain H1N1 polymerase acidic subunit N-terminal region at pH 7.0

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2016-02-17
Method	X-RAY DIFFRACTION 2.151 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4P9, MN, SO4

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5JHT \| pdb_00005jht	Download File View File

Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region crystallized with potassium sodium tartrate

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.

(2017) Cryst Growth Des 17: 534-542

Released	2016-05-11
Method	X-RAY DIFFRACTION 1.751 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	MN, TLA

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5JHV \| pdb_00005jhv	Download File View File

Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region crystallized with polyethylene glycol 8000

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.

(2017) Cryst Growth Des 17: 534-542

Released	2016-05-11
Method	X-RAY DIFFRACTION 2.749 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	MN

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1MG8 | pdb_00001mg8

NMR structure of ubiquitin-like domain in murine Parkin

1Q2N | pdb_00001q2n

REFINED Solution NMR structure of the Z domain of STAPHYLOCOCCAL PROTEIN A

2MK4 | pdb_00002mk4

Solution structure of ORF2

2SPZ | pdb_00002spz

STAPHYLOCOCCAL PROTEIN A, Z-DOMAIN, NMR, 10 STRUCTURES

3WQB | pdb_00003wqb

Crystal structure of aeromonas sobria serine protease (ASP) and the chaperone (ORF2) complex

4YYL | pdb_00004yyl

Phenolic acid derivative bound to influenza strain H1N1 polymerase subunit PA endonuclease

4ZHZ | pdb_00004zhz

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region with expelling one of the metal ions in the active site

4ZI0 | pdb_00004zi0

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region without a chelation to the metal ions in the active site

4ZQQ | pdb_00004zqq

Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region

5FDD | pdb_00005fdd

Endonuclease inhibitor 1 bound to influenza strain H1N1 polymerase acidic subunit N-terminal region at pH 7.0

5FDG | pdb_00005fdg

Endonuclease inhibitor 3 bound to influenza strain H1N1 polymerase acidic subunit N-terminal region at pH 7.0

5I13 | pdb_00005i13

Endonuclease inhibitor 2 bound to influenza strain H1N1 polymerase acidic subunit N-terminal region at pH 7.0

5JHT | pdb_00005jht

Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region crystallized with potassium sodium tartrate

5JHV | pdb_00005jhv

Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region crystallized with polyethylene glycol 8000

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1MG8 | pdb_00001mg8

1Q2N | pdb_00001q2n

2MK4 | pdb_00002mk4

2SPZ | pdb_00002spz

3WQB | pdb_00003wqb

4YYL | pdb_00004yyl

4ZHZ | pdb_00004zhz

4ZI0 | pdb_00004zi0

4ZQQ | pdb_00004zqq

5FDD | pdb_00005fdd

5FDG | pdb_00005fdg

5I13 | pdb_00005i13

5JHT | pdb_00005jht

5JHV | pdb_00005jhv