RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Thompson, T.B."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Homo sapiens (16)
	Mus musculus (7)
	Mammalian orthorubulavirus 5 (6)
	Rattus norvegicus (3)
	Escherichia coli (2)
	Salmonella enterica subsp. enterica serovar Typhimurium (2)
	Streptomyces glaucescens (1)

Taxonomy

	Eukaryota (18)
	Riboviria (6)
	Bacteria (5)

Experimental Method

	X-RAY DIFFRACTION (27)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (29)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (11)
	2.5 - 3.0 (10)
	3.0 - 3.5 (5)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (5)
	2005 - 2009 (9)
	2010 - 2014 (3)
	2015 - 2019 (5)
	2020 - 2024 (3)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (6)
	Lyases (3)

Symmetry Type

	Cyclic (24)
	Asymmetric (5)

SCOP Classification

	Small proteins (11)
	Alpha and beta proteins (a/b) (4)
	All beta proteins (6)
	Alpha and beta proteins (a+b) (3)

AllSelected

1 to 25 of 29 Structures

Page 1 of 2

Sort by

Explore in 3D

1C9K \| pdb_00001c9k	Download File View File

THE THREE DIMENSIONAL STRUCTURE OF ADENOSYLCOBINAMIDE KINASE/ ADENOSYLCOBINAMIDE PHOSPHATE GUALYLYLTRANSFERASE (COBU) COMPLEXED WITH GMP: EVIDENCE FOR A SUBSTRATE INDUCED TRANSFERASE ACTIVE SITE

Thompson, T.B., Thomas, M.G., Esclante-Semerena, J.C., Rayment, I.

(1999) Biochemistry 38: 12995-13005

Released	1999-08-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	ADENOSYLCOBINAMIDE KINASE (protein)
Unique Ligands	5GP, MG, PO4, POP

Explore in 3D

1CBU \| pdb_00001cbu	Download File View File

ADENOSYLCOBINAMIDE KINASE/ADENOSYLCOBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE (COBU) FROM SALMONELLA TYPHIMURIUM

Thompson, T.B., Thomas, M.G., Escalante-Semerena, J.C., Rayment, I.

(1998) Biochemistry 37: 7686-7695

Released	1998-12-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	ADENOSYLCOBINAMIDE KINASE/ADENOSYLCOBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE (protein)
Unique Ligands	SO4

Explore in 3D

1FHU \| pdb_00001fhu	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF O-SUCCINYLBENZOATE SYNTHASE FROM E. COLI

Rayment, I., Thompson, T.B., Gerlt, J.A.

(2000) Biochemistry 39: 10662-10676

Released	2000-08-23
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	O-SUCCINYLBENZOATE SYNTHASE (protein)

Explore in 3D

1FHV \| pdb_00001fhv	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF O-SUCCINYLBENZOATE SYNTHASE FROM E. COLI COMPLEXED WITH MG AND OSB

Rayment, I., Thompson, T.B., Gerlt, J.A.

(2000) Biochemistry 39: 10662-10676

Released	2000-08-23
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Escherichia coli
Macromolecule	O-SUCCINYLBENZOATE SYNTHASE (protein)
Unique Ligands	MG, OSB

Explore in 3D

1NYS \| pdb_00001nys	Download File View File

Crystal Structure of Activin A Bound to the ECD of ActRIIB P41

Thompson, T.B., Woodruff, T.K., Jardetzky, T.S.

(2003) EMBO J 22: 1555-1566

Released	2003-04-08
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Inhibin beta A chain (protein) activin receptor (protein)

Explore in 3D

1NYU \| pdb_00001nyu	Download File View File

Crystal Structure of Activin A Bound to the ECD of ActRIIB

Thompson, T.B., Woodruff, T.K., Jardetzky, T.S.

(2003) EMBO J 22: 1555-1566

Released	2003-04-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Inhibin beta A chain (protein) activin receptor (protein)

Explore in 3D

1TUW \| pdb_00001tuw	Download File View File

Structural and Functional Analysis of Tetracenomycin F2 Cyclase from Streptomyces glaucescens: A Type-II Polyketide Cyclase

Thompson, T.B., Katayama, K., Watanabe, K., Hutchinson, C.R., Rayment, I.

(2004) J Biological Chem 279: 37956-37963

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces glaucescens
Macromolecule	Tetracenomycin polyketide synthesis protein tcmI (protein)
Unique Ligands	SO4

Explore in 3D

1Z4V \| pdb_00001z4v	Download File View File

Parainfluenza Virus 5 (SV5) Hemagglutinin-Neuraminidase (HN) with ligand DANA (soaked with DANA, pH 7.0)

Yuan, P., Thompson, T.B., Wurzburg, B.A., Paterson, R.G., Lamb, R.A., Jardetzky, T.S.

(2005) Structure 13: 803-815

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mammalian orthorubulavirus 5
Macromolecule	Hemagglutinin-neuraminidase (protein)
Unique Ligands	CA, DAN, NAG
Unique branched monosaccharides	NAG

Explore in 3D

1Z4W \| pdb_00001z4w	Download File View File

Parainfluenza Virus 5 (SV5) Hemagglutinin-Neuraminidase (HN) with ligand DANA (soaked with DANA, pH8.0)

Yuan, P., Thompson, T.B., Wurzburg, B.A., Paterson, R.G., Lamb, R.A., Jardetzky, T.S.

(2005) Structure 13: 803-815

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mammalian orthorubulavirus 5
Macromolecule	Hemagglutinin-neuraminidase (protein)
Unique Ligands	CA, DAN, NAG
Unique branched monosaccharides	NAG

Explore in 3D

1Z4X \| pdb_00001z4x	Download File View File

Parainfluenza Virus 5 (SV5) Hemagglutinin-Neuraminidase (HN) with ligand Sialyllactose (soaked with Sialyllactose, pH8.0)

Yuan, P., Thompson, T.B., Wurzburg, B.A., Paterson, R.G., Lamb, R.A., Jardetzky, T.S.

(2005) Structure 13: 803-815

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mammalian orthorubulavirus 5
Macromolecule	Hemagglutinin-neuraminidase (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	GAL, GLC, NAG, SIA

Explore in 3D

1Z4Y \| pdb_00001z4y	Download File View File

Parainfluenza Virus 5 (SV5) Hemagglutinin-Neuraminidase (HN) (pH 8.0)

Yuan, P., Thompson, T.B., Wurzburg, B.A., Paterson, R.G., Lamb, R.A., Jardetzky, T.S.

(2005) Structure 13: 803-815

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mammalian orthorubulavirus 5
Macromolecule	Hemagglutinin-neuraminidase (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	NAG

Explore in 3D

1Z4Z \| pdb_00001z4z	Download File View File

Parainfluenza Virus 5 (SV5) Hemagglutinin-Neuraminidase (HN) with ligand DANA(soaked with sialic acid, pH7.0))

Yuan, P., Thompson, T.B., Wurzburg, B.A., Paterson, R.G., Lamb, R.A., Jardetzky, T.S.

(2005) Structure 13: 803-815

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mammalian orthorubulavirus 5
Macromolecule	Hemagglutinin-neuraminidase (protein)
Unique Ligands	CA, DAN, NAG
Unique branched monosaccharides	NAG

Explore in 3D

1Z50 \| pdb_00001z50	Download File View File

Parainfluenza Virus 5 (SV5) Hemagglutinin-Neuraminidase (HN) with ligand DANA (soaked with sialic acid, pH 8.0)

Yuan, P., Thompson, T.B., Wurzburg, B.A., Paterson, R.G., Lamb, R.A., Jardetzky, T.S.

(2005) Structure 13: 803-815

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mammalian orthorubulavirus 5
Macromolecule	Hemagglutinin-neuraminidase (protein)
Unique Ligands	CA, DAN, NAG
Unique branched monosaccharides	NAG

Explore in 3D

2B0U \| pdb_00002b0u	Download File View File

The Structure of the Follistatin:Activin Complex

Thompson, T.B., Lerch, T.F., Cook, R.W., Woodruff, T.K., Jardetzky, T.S.

(2005) Dev Cell 9: 535-543

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Follistatin (protein) Inhibin beta A chain (protein)
Unique Ligands	IR3, MLI, MPD

Explore in 3D

3B4V \| pdb_00003b4v	Download File View File

X-Ray structure of Activin in complex with FSTL3

Thompson, T.B.

(2008) J Biological Chem 283: 32831-32838

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens
Macromolecule	Inhibin beta A chain (protein) follistatin-like 3 (protein)
Unique Ligands	EDO, NAG, SO4

Explore in 3D

3HH2 \| pdb_00003hh2	Download File View File

Crystal structure of the myostatin:follistatin 288 complex

Cash, J.N., Thompson, T.B.

(2009) EMBO J 28: 2662-2676

Released	2009-08-04
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Follistatin (protein) Growth/differentiation factor 8 (protein)
Unique Ligands	CIT, PO4

Explore in 3D

3S84 \| pdb_00003s84	Download File View File

Dimeric apoA-IV

Deng, X., Davidson, W.S., Thompson, T.B.

(2012) Structure 20: 767-779

Released	2012-05-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Apolipoprotein A-IV (protein)
Unique Ligands	SO4

Explore in 3D

3SEK \| pdb_00003sek	Download File View File

Crystal Structure of the Myostatin:Follistatin-like 3 Complex

Cash, J.N., Thompson, T.B.

(2012) J Biological Chem 287: 1043-1053

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.401 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Follistatin-related protein 3 (protein) Growth/differentiation factor 8 (protein)
Unique Ligands	NAG

Explore in 3D

4JPH \| pdb_00004jph	Download File View File

Crystal structure of Protein Related to DAN and Cerberus (PRDC)

Deng, X., Nolan, K.T., Kattamuri, C., Thompson, T.B.

(2013) Structure 21: 1417-1429

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mus musculus
Macromolecule	Gremlin-2 (protein)
Unique Ligands	CIT, GOL, GSH

Explore in 3D

4X1J \| pdb_00004x1j	Download File View File

X-ray crystal structure of the dimeric BMP antagonist NBL1

Thompson, T.B., Nolan, K., Kattamuri, C.

(2015) J Biological Chem 290: 4759-4771

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Neuroblastoma suppressor of tumorigenicity 1 (protein)
Unique Ligands	NAG

Explore in 3D

5HK5 \| pdb_00005hk5	Download File View File

Structure of the Grem2-GDF5 Inhibitory Complex

Nolan, K., Thompson, T.B., Read, R.J.

(2016) Cell Rep 16: 2077-2086

Released	2016-08-24
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Gremlin-2 (protein) Growth/differentiation factor 5 (protein)

Explore in 3D

5JHW \| pdb_00005jhw	Download File View File

Crystal Structure of the GDF11:Follistatin 288 complex

Walker, R.G., Thompson, T.B.

(2017) BMC Biol 15: 19-19

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Follistatin (protein) Growth/differentiation factor 11 (protein)
Unique Ligands	FLC, PO4

Explore in 3D

5JI1 \| pdb_00005ji1	Download File View File

Crystal Structure of GDF8

Walker, R.G., Thompson, T.B.

(2017) BMC Biol 15: 19-19

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mus musculus
Macromolecule	Growth/differentiation factor 8 (protein)
Unique Ligands	MPD

Explore in 3D

6MAC \| pdb_00006mac	Download File View File

Ternary structure of GDF11 bound to ActRIIB-ECD and Alk5-ECD

Goebel, E.J., Thompson, T.B.

(2019) Proc Natl Acad Sci U S A 116: 15505-15513

Released	2019-07-17
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Activin receptor type-2B (protein) Growth/differentiation factor 11 (protein) TGF-beta receptor type-1 (protein)
Unique Ligands	NAG

Explore in 3D

7L0J \| pdb_00007l0j	Download File View File

Structure of AMH bound to AMHR2-ECD

Hart, K.N., Thompson, T.B.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-06-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Anti-Muellerian hormone type-2 receptor (protein) Muellerian-inhibiting factor (protein)
Unique Ligands	NAG, SO4

1 to 25 of 29 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1C9K | pdb_00001c9k

1CBU | pdb_00001cbu

1FHU | pdb_00001fhu

1FHV | pdb_00001fhv

1NYS | pdb_00001nys

1NYU | pdb_00001nyu

1TUW | pdb_00001tuw

1Z4V | pdb_00001z4v

1Z4W | pdb_00001z4w

1Z4X | pdb_00001z4x

1Z4Y | pdb_00001z4y

1Z4Z | pdb_00001z4z

1Z50 | pdb_00001z50

2B0U | pdb_00002b0u

3B4V | pdb_00003b4v

3HH2 | pdb_00003hh2

3S84 | pdb_00003s84

3SEK | pdb_00003sek

4JPH | pdb_00004jph

4X1J | pdb_00004x1j

5HK5 | pdb_00005hk5

5JHW | pdb_00005jhw

5JI1 | pdb_00005ji1

6MAC | pdb_00006mac

7L0J | pdb_00007l0j