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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Yan, Z."

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Search Summary

This query matches 50 Structures.

Refinements

Structure Determination Methodology

experimental (50)

Scientific Name of Source Organism

	Homo sapiens (15)
	Oryctolagus cuniculus (8)
	Arabidopsis thaliana (6)
	Chlamydomonas reinhardtii (3)
	Escherichia coli (3)
	Sulfurisphaera tokodaii str. 7 (3)
	Anaplasma marginale (2)
	Aquifex aeolicus (2)
	Aquifex aeolicus VF5 (2)
	Rattus norvegicus (2)

More...

Taxonomy

	Eukaryota (36)
	Bacteria (12)
	Archaea (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

	ELECTRON MICROSCOPY (27)
	X-RAY DIFFRACTION (21)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (48)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (9)
	2.0 - 2.5 (8)
	2.5 - 3.0 (8)
	3.0 - 3.5 (9)
	3.5 - 4.0 (5)
	4.0 - 4.5 (7)
	> 4.5 (2)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (4)
	2015 - 2019 (24)
	2020 - 2024 (16)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (11)
	Oxidoreductases (5)
	Isomerases (5)
	Transferases (1)

Membrane Protein Annotation

	PDBTM (18)
	OPM (17)
	mpstruc (8)
	MemProtMD (6)

Symmetry Type

	Cyclic (28)
	Asymmetric (23)

SCOP Classification

	All alpha proteins (5)
	All beta proteins (4)
	Alpha and beta proteins (a/b) (4)
	Membrane and cell surface proteins and peptides (1)
	Alpha and beta proteins (a+b) (1)
	Peptides (1)

AllSelected

1 to 25 of 50 Structures

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2PR9 \| pdb_00002pr9	Download File View File

Mu2 adaptin subunit (AP50) of AP2 adaptor (second domain), complexed with GABAA receptor-gamma2 subunit-derived internalization peptide DEEYGYECL

Vahedi-Faridi, A., Haucke, V., Kittler, J.T., Kukhtina, V., Moss, S.J., Saenger, W., Chen, G.-J., Tretter, V., Smith, K., Yan, Z., McAinsh, K., Arancibia-Carcamo, L.

(2008) Proc Natl Acad Sci U S A 105: 3616-3621

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Rattus norvegicus
Macromolecule	AP-2 complex subunit mu-1 (protein) GABA(A) receptor subunit gamma-2 peptide (protein)

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2R8Q \| pdb_00002r8q	Download File View File

Structure of LmjPDEB1 in complex with IBMX

Wang, H., Yan, Z., Geng, J., Kunz, S., Seebeck, T., Ke, H.

(2007) Mol Microbiol 66: 1029-1038

Released	2007-12-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Leishmania major
Macromolecule	Class I phosphodiesterase PDEB1 (protein)
Unique Ligands	IBM, MG, ZN

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3ECM \| pdb_00003ecm	Download File View File

Crystal structure of the unliganded PDE8A catalytic domain

Wang, H., Yan, Z., Yang, S., Cai, J., Robinson, H., Ke, H.

(2008) Biochemistry 47: 12760-12768

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A (protein)
Unique Ligands	MG, ZN

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3ECN \| pdb_00003ecn	Download File View File

Crystal structure of PDE8A catalytic domain in complex with IBMX

Wang, H., Yan, Z., Yang, S., Cai, J., Robinson, H., Ke, H.

(2008) Biochemistry 47: 12760-12768

Released	2008-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A (protein)
Unique Ligands	IBM, MG, ZN

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3J8H \| pdb_00003j8h	Download File View File

Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution

Yan, Z., Bai, X., Yan, C., Wu, J., Scheres, S.H.W., Shi, Y., Yan, N.

(2015) Nature 517: 50-55

Released	2014-12-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ZN

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3JBR \| pdb_00003jbr	Download File View File

Cryo-EM structure of the rabbit voltage-gated calcium channel Cav1.1 complex at 4.2 angstrom

Wu, J.P., Yan, Z., Yan, N.

(2015) Science 350: aad2395-aad2395

Released	2015-12-30
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Oryctolagus cuniculus Rattus norvegicus
Macromolecule	Voltage-dependent L-type calcium channel subunit alpha-1S (protein) Voltage-dependent L-type calcium channel subunit beta-2 (protein) Voltage-dependent calcium channel gamma-1 subunit (protein) Voltage-dependent calcium channel subunit alpha-2/delta-1 (protein)
Unique Ligands	BMA, CA, NAG

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4DNU \| pdb_00004dnu	Download File View File

Crystal structure of the W285A mutant of UVB-resistance protein UVR8

Wu, D., Hu, Q., Yan, Z., Chen, W., Yan, C., Zhang, J., Wang, J., Shi, Y.

(2012) Nature 484: 214-219

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.764 Å
Organisms	Arabidopsis thaliana
Macromolecule	AT5g63860/MGI19_6 (protein)

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4DNV \| pdb_00004dnv	Download File View File

Crystal structure of the W285F mutant of UVB-resistance protein UVR8

Wu, D., Hu, Q., Yan, Z., Chen, W., Yan, C., Zhang, J., Wang, J., Shi, Y.

(2012) Nature 484: 214-219

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Arabidopsis thaliana
Macromolecule	AT5g63860/MGI19_6 (protein)

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4DNW \| pdb_00004dnw	Download File View File

Crystal structure of UVB-resistance protein UVR8

Wu, D., Hu, Q., Yan, Z., Chen, W., Yan, C., Wang, J., Shi, Y.

(2012) Nature 484: 214-219

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.773 Å
Organisms	Arabidopsis thaliana
Macromolecule	AT5g63860/MGI19_6 (protein)

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4WJA \| pdb_00004wja	Download File View File

Crystal Structure of PAXX

Xing, M., Yang, M., Huo, W., Feng, F., Wei, L., Ning, S., Yan, Z., Li, W., Wang, Q., Hou, M., Dong, C., Guo, R., Gao, G., Ji, J., Lan, L., Liang, H., Xu, D.

(2015) Nat Commun 6: 6233-6233

Released	2015-03-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Uncharacterized protein C9orf142 (protein)

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5B46 \| pdb_00005b46	Download File View File

2-Oxoacid:Ferredoxin Oxidoreductase 2 from Sulfolobus tokodai - ligand free form

Yan, Z., Maruyama, A., Arakawa, T., Fushinobu, S., Wakagi, T.

(2016) Sci Rep 6: 33061-33061

Released	2016-09-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	2-oxoacid--ferredoxin oxidoreductase alpha subunit (protein) 2-oxoacid--ferredoxin oxidoreductase beta subunit (protein)
Unique Ligands	MG, SF4, TPP

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5B47 \| pdb_00005b47	Download File View File

2-Oxoacid:Ferredoxin Oxidoreductase 2 from Sulfolobus tokodai - pyruvate complex

Yan, Z., Maruyama, A., Arakawa, T., Fushinobu, S., Wakagi, T.

(2016) Sci Rep 6: 33061-33061

Released	2016-09-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	2-oxoacid--ferredoxin oxidoreductase alpha subunit (protein) 2-oxoacid--ferredoxin oxidoreductase beta subunit (protein)
Unique Ligands	MG, PYR, SF4, TPP

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5B48 \| pdb_00005b48	Download File View File

2-Oxoacid:Ferredoxin Oxidoreductase 1 from Sulfolobus tokodai

Yan, Z., Maruyama, A., Arakawa, T., Fushinobu, S., Wakagi, T.

(2016) Sci Rep 6: 33061-33061

Released	2016-09-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	2-oxoacid--ferredoxin oxidoreductase alpha subunit (protein) 2-oxoacid--ferredoxin oxidoreductase beta subunit (protein)
Unique Ligands	MG, SF4, TDN

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5EWT \| pdb_00005ewt	Download File View File

Crystal structure of ExoIII endonuclease from Sulfolobus islandicus

Yan, Z., Yuan, Z.L., Gu, L.C., Shen, Y.L.

To be published

Released	2016-11-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharolobus islandicus REY15A
Macromolecule	Exodeoxyribonuclease III Xth (protein)

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5EZ6 \| pdb_00005ez6	Download File View File

Crystallization and preliminary X-ray crystallographic analysis of a small GTPase RhoA

Yan, Z., Ma, S., Zhang, Y., Ma, L., Wang, F., Li, J., Miao, L.

To be published

Released	2016-12-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Transforming protein RhoA (protein)
Unique Ligands	GDP, MG

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5GJV \| pdb_00005gjv	Download File View File

Structure of the mammalian voltage-gated calcium channel Cav1.1 complex at near atomic resolution

Wu, J.P., Yan, Z., Li, Z.Q., Zhou, Q., Yan, N.

(2016) Nature 537: 191-196

Released	2016-09-14
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Voltage-dependent L-type calcium channel subunit alpha-1S (protein) Voltage-dependent L-type calcium channel subunit beta-1 (protein) Voltage-dependent calcium channel gamma-1 subunit (protein) Voltage-dependent calcium channel subunit alpha-2/delta-1 (protein)
Unique Ligands	CA, NAG, PC1
Unique branched monosaccharides	BMA, NAG

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5GJW \| pdb_00005gjw	Download File View File

Structure of the mammalian voltage-gated calcium channel Cav1.1 complex for ClassII map

Wu, J.P., Yan, Z., Li, Z.Q., Zhou, Q., Yan, N.

(2016) Nature 537: 191-196

Released	2016-09-14
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Voltage-dependent L-type calcium channel subunit alpha-1S (protein) Voltage-dependent L-type calcium channel subunit beta-1 (protein) Voltage-dependent calcium channel gamma-1 subunit (protein) Voltage-dependent calcium channel subunit alpha-2/delta-1 (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	BMA, NAG

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5GKY \| pdb_00005gky	Download File View File

Structure of RyR1 in a closed state (C1 conformer)

Bai, X.C., Yan, Z., Wu, J.P., Yan, N.

(2016) Cell Res 26: 995-1006

Released	2016-08-24
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ZN

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5GKZ \| pdb_00005gkz	Download File View File

Structure of RyR1 in a closed state (C3 conformer)

Bai, X.C., Yan, Z., Wu, J.P., Yan, N.

(2016) Cell Res 26: 995-1006

Released	2016-08-24
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ZN

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5GL0 \| pdb_00005gl0	Download File View File

Structure of RyR1 in a closed state (C4 conformer)

Bai, X.C., Yan, Z., Wu, J.P., Yan, N.

(2016) Cell Res 26: 995-1006

Released	2016-08-24
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ZN

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5GL1 \| pdb_00005gl1	Download File View File

Structure of RyR1 in an open state

Bai, X.C., Yan, Z., Wu, J.P., Yan, N.

(2016) Cell Res 26: 995-1006

Released	2016-08-24
Method	ELECTRON MICROSCOPY 5.7 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ZN

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5JHG \| pdb_00005jhg	Download File View File

Crystal structure of the complex between the human RhoA and the DH/PH domain of human ARHGEF11

Wang, R., Chen, Q., Zhang, H., Yan, Z., Li, J., Miao, L., Wang, F.

To be published

Released	2017-04-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Rho guanine nucleotide exchange factor 11 (protein) Transforming protein RhoA (protein)
Unique Ligands	GOL

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5JHH \| pdb_00005jhh	Download File View File

Crystal structure of the ternary complex between the human RhoA, its inhibitor and the DH/PH domain of human ARHGEF11

Lv, Z., Wang, R., Ma, L., Miao, Q., Wu, J., Yan, Z., Li, J., Miao, L., Wang, F.

To be published

Released	2017-04-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Rho guanine nucleotide exchange factor 11 (protein) Transforming protein RhoA (protein)
Unique Ligands	GOL, RA0

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5WQ7 \| pdb_00005wq7	Download File View File

CryoEM structure of type II secretion system secretin GspD in E.coli K12

Yan, Z., Yin, M., Li, X.

(2017) Nat Struct Mol Biol 24: 177-183

Released	2016-12-28
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Escherichia coli K-12
Macromolecule	Putative type II secretion system protein D (protein)

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5WQ8 \| pdb_00005wq8	Download File View File

CryoEM structure of type II secretion system secretin GspD in Vibrio cholerae

Yan, Z., Yin, M., Li, X.

(2017) Nat Struct Mol Biol 24: 177-183

Released	2016-12-28
Method	ELECTRON MICROSCOPY 3.26 Å
Organisms	Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	Type II secretion system protein D (protein)

1 to 25 of 50 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2PR9 | pdb_00002pr9

2R8Q | pdb_00002r8q

3ECM | pdb_00003ecm

3ECN | pdb_00003ecn

3J8H | pdb_00003j8h

3JBR | pdb_00003jbr

4DNU | pdb_00004dnu

4DNV | pdb_00004dnv

4DNW | pdb_00004dnw

4WJA | pdb_00004wja

5B46 | pdb_00005b46

5B47 | pdb_00005b47

5B48 | pdb_00005b48

5EWT | pdb_00005ewt

5EZ6 | pdb_00005ez6

5GJV | pdb_00005gjv

5GJW | pdb_00005gjw

5GKY | pdb_00005gky

5GKZ | pdb_00005gkz

5GL0 | pdb_00005gl0

5GL1 | pdb_00005gl1

5JHG | pdb_00005jhg

5JHH | pdb_00005jhh

5WQ7 | pdb_00005wq7

5WQ8 | pdb_00005wq8