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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Abrahams, J.P."

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Search Summary

This query matches 71 Structures.

Refinements

Structure Determination Methodology

experimental (71)

Scientific Name of Source Organism

	Bos taurus (16)
	Homo sapiens (15)
	Thermus thermophilus (7)
	Streptomyces sp. QL37 (4)
	Escherichia coli (3)
	Mus musculus (3)
	Streptomyces coelicolor (3)
	Gallus gallus (2)
	Rattus norvegicus (2)
	Saccharomyces cerevisiae (2)

More...

Taxonomy

	Eukaryota (45)
	Bacteria (23)
	Riboviria (3)
	Archaea (1)
	Duplodnaviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (49)
	ELECTRON MICROSCOPY (15)
	ELECTRON CRYSTALLOGRAPHY (5)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (70)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (10)
	2.0 - 2.5 (15)
	2.5 - 3.0 (18)
	3.0 - 3.5 (9)
	3.5 - 4.0 (6)
	4.0 - 4.5 (1)
	> 4.5 (8)

Release Date

	1995 - 1999 (11)
	2000 - 2004 (15)
	2005 - 2009 (17)
	2010 - 2014 (1)
	2015 - 2019 (3)
	2020 - 2024 (21)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (21)
	Translocases (18)
	Ligases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	mpstruc (5)
	PDBTM (2)
	MemProtMD (1)
	OPM (1)

Symmetry Type

	Asymmetric (52)
	Cyclic (18)
	Icosahedral (3)
	Dihedral (2)
	Helical (1)

SCOP Classification

	All beta proteins (25)
	Alpha and beta proteins (a/b) (18)
	All alpha proteins (17)
	Alpha and beta proteins (a+b) (8)
	Low resolution protein structures (2)
	Multi-domain proteins (alpha and beta) (4)
	Small proteins (1)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 71 Structures

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1AZX \| pdb_00001azx	Download File View File

ANTITHROMBIN/PENTASACCHARIDE COMPLEX

Jin, L., Abrahams, J.P., Skinner, R., Petitou, M., Pike, R.N., Carrell, R.W.

(1997) Proc Natl Acad Sci U S A 94: 14683-14688

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	ANTITHROMBIN (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GU1, GU6, Z9H, Z9K, Z9L

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1BMF \| pdb_00001bmf	Download File View File

BOVINE MITOCHONDRIAL F1-ATPASE

Abrahams, J.P., Leslie, A.G.W., Lutter, R., Walker, J.E.

(1994) Nature 370: 621-628

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Bos taurus
Macromolecule	BOVINE MITOCHONDRIAL F1-ATPASE (protein)
Unique Ligands	ADP, ANP, MG

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1BR8 \| pdb_00001br8	Download File View File

IMPLICATIONS FOR FUNCTION AND THERAPY OF A 2.9A STRUCTURE OF BINARY-COMPLEXED ANTITHROMBIN

Skinner, R., Chang, W.S.W., Jin, L., Pei, X.Y., Huntington, J.A., Abrahams, J.P., Carrell, R.W., Lomas, D.A.

(1998) J Mol Biology 283: 9-14

Released	1998-09-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (ANTITHROMBIN-III) (protein) PROTEIN (PEPTIDE) (protein)

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1COW \| pdb_00001cow	Download File View File

BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B

van Raaij, M.J., Abrahams, J.P., Leslie, A.G.W., Walker, J.E.

(1996) Proc Natl Acad Sci U S A 93: 6913-6917

Released	1996-08-17
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Bos taurus
Macromolecule	BOVINE MITOCHONDRIAL F1-ATPASE (protein)
Unique Ligands	ADP, ANP, AUR, MG

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1E1Q \| pdb_00001e1q	Download File View File

BOVINE MITOCHONDRIAL F1-ATPASE AT 100K

Braig, K., Menz, R.I., Montgomery, M.G., Leslie, A.G.W., Walker, J.E.

(2000) Structure 8: 567

Released	2000-06-28
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Bos taurus
Macromolecule	BOVINE MITOCHONDRIAL F1-ATPASE (protein)
Unique Ligands	ADP, ANP, MG, PO4

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1E1R \| pdb_00001e1r	Download File View File

BOVINE MITOCHONDRIAL F1-ATPASE INHIBITED BY MG2+ADP AND ALUMINIUM FLUORIDE

Braig, K., Menz, R.I., Montgomery, M.G., Leslie, A.G.W., Walker, J.E.

(2000) Structure 8: 567

Released	2000-06-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus
Macromolecule	BOVINE MITOCHONDRIAL F1-ATPASE (protein)
Unique Ligands	ADP, AF3, ANP, MG, PO4

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1E79 \| pdb_00001e79	Download File View File

Bovine F1-ATPase inhibited by DCCD (dicyclohexylcarbodiimide)

Gibbons, C., Montgomery, M.G., Leslie, A.G.W., Walker, J.E.

(2000) Nat Struct Biol 7: 1055

Released	2000-11-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	ATP SYNTHASE ALPHA CHAIN HEART ISOFORM (protein) ATP SYNTHASE BETA CHAIN (protein) ATP SYNTHASE DELTA CHAIN (protein) ATP SYNTHASE EPSILON CHAIN (protein) ATP SYNTHASE GAMMA CHAIN (protein)
Unique Ligands	ADP, ATP, DCW, GOL, MG, SO4

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1EFR \| pdb_00001efr	Download File View File

BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE PEPTIDE ANTIBIOTIC EFRAPEPTIN

Abrahams, J.P., Buchanan, S.K., Van Raaij, M.J., Fearnley, I.M., Leslie, A.G.W., Walker, J.E.

(1996) Proc Natl Acad Sci U S A 93: 9420

Released	1997-02-12
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Bos taurus Tolypocladium inflatum
Macromolecule	BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT ALPHA (protein) BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT BETA (protein) BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT GAMMA (protein) EFRAPEPTIN C (protein)
Unique Ligands	ADP, ANP, MG

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1EXS \| pdb_00001exs	Download File View File

STRUCTURE OF PORCINE BETA-LACTOGLOBULIN

Abrahams, J.P., Hoedemaeker, F.J.

(2002) Acta Crystallogr D Biol Crystallogr 58: 480-486

Released	2000-11-15
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Sus scrofa
Macromolecule	BETA-LACTOGLOBULIN (protein)
Unique Ligands	GOL, NA

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1H8E \| pdb_00001h8e	Download File View File

(ADP.AlF4)2(ADP.SO4) bovine F1-ATPase (all three catalytic sites occupied)

Menz, R.I., Walker, J.E., Leslie, A.G.W.

(2001) Cell 106: 331

Released	2001-08-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	BOVINE MITOCHONDRIAL F1-ATPASE (protein)
Unique Ligands	ADP, ALF, GOL, MG, SO4

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1H8H \| pdb_00001h8h	Download File View File

Bovine mitochondrial F1-ATPase crystallised in the presence of 5mm AMPPNP

Braig, K., Menz, R.I., Montgomery, M.G., Leslie, A.G.W., Walker, J.E.

(2001) FEBS Lett 494: 11

Released	2001-04-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bos taurus
Macromolecule	BOVINE MITOCHONDRIAL F1-ATPASE (protein)
Unique Ligands	ADP, ATP, GOL, MG, PO4

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1MO7 \| pdb_00001mo7	Download File View File

ATPase

Hilge, M., Siegal, G., Vuister, G.W., Guentert, P., Gloor, S.M., Abrahams, J.P.

(2003) Nat Struct Biol 10: 468-474

Released	2003-06-03
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Sodium/Potassium-transporting ATPase alpha-1 chain (protein)

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1MO8 \| pdb_00001mo8	Download File View File

ATPase

Hilge, M., Siegal, G., Vuister, G.W., Guentert, P., Gloor, S.M., Abrahams, J.P.

(2003) Nat Struct Biol 10: 468-474

Released	2003-06-10
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Sodium/Potassium-Transporting ATPase alpha-1 (protein)
Unique Ligands	ATP

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1NBM \| pdb_00001nbm	Download File View File

THE STRUCTURE OF BOVINE F1-ATPASE COVALENTLY INHIBITED WITH 4-CHLORO-7-NITROBENZOFURAZAN

Orriss, G.L., Leslie, A.G.W., Braig, K., Walker, J.E.

(1998) Structure 6: 831-837

Released	1998-08-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bos taurus
Macromolecule	F1-ATPASE (protein)
Unique Ligands	ADP, ATP, MG, PO4

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1OCY \| pdb_00001ocy	Download File View File

Structure of the receptor-binding domain of the bacteriophage T4 short tail fibre

Thomassen, E., Gielen, G., Schuetz, M., Miller, S., van Raaij, M.J.

(2003) J Mol Biology 331: 361-373

Released	2003-07-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Tequatrovirus T4
Macromolecule	BACTERIOPHAGE T4 SHORT TAIL FIBRE (protein)
Unique Ligands	CIT, SO4, ZN

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1OHH \| pdb_00001ohh	Download File View File

BOVINE MITOCHONDRIAL F1-ATPASE complexed with the inhibitor protein IF1

Cabezon, E., Montgomery, M.G., Leslie, A.G.W., Walker, J.E.

(2003) Nat Struct Biol 10: 744

Released	2003-06-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus
Macromolecule	ATP synthase subunit alpha, mitochondrial (protein) ATP synthase subunit beta, mitochondrial (protein) ATP synthase subunit gamma, mitochondrial (protein) ATPase inhibitor, mitochondrial (protein)
Unique Ligands	ANP, MG

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1PSI \| pdb_00001psi	Download File View File

Intact recombined alpha1-antitrypsin mutant PHE 51 to LEU

Abrahams, J.P., Elliott, P.R., Lomas, D.A., Carrell, R.W.

(1996) Nat Struct Biol 3: 676-681

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.92 Å
Organisms	Homo sapiens
Macromolecule	ALPHA=1=-ANTITRYPSIN (protein)

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1QAD \| pdb_00001qad	Download File View File

Crystal Structure of the C-Terminal SH2 Domain of the P85 alpha Regulatory Subunit of Phosphoinositide 3-Kinase: An SH2 domain mimicking its own substrate

Hoedemaeker, P.J., Siegal, G., Roe, M., Driscoll, P.C., Abrahams, J.P.A.

(1999) J Mol Biology 292: 763-770

Released	1999-10-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	PI3-KINASE P85 ALPHA SUBUNIT (protein)

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1QO1 \| pdb_00001qo1	Download File View File

Molecular Architecture of the Rotary Motor in ATP Synthase from Yeast Mitochondria

Stock, D., Leslie, A.G.W., Walker, J.E.

(1999) Science 286: 1700

Released	1999-11-04
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ATP SYNTHASE ALPHA CHAIN (protein) ATP SYNTHASE BETA CHAIN (protein) ATP SYNTHASE DELTA CHAIN (protein) ATP SYNTHASE GAMMA CHAIN (protein) ATP SYNTHASE PROTEIN 9 (protein)

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1SKY \| pdb_00001sky	Download File View File

CRYSTAL STRUCTURE OF THE NUCLEOTIDE FREE ALPHA3BETA3 SUB-COMPLEX OF F1-ATPASE FROM THE THERMOPHILIC BACILLUS PS3

Shirakihara, Y., Leslie, A.G.W., Abrahams, J.P., Walker, J.E., Ueda, T., Sekimoto, Y., Kambara, M., Saika, K., Kagawa, Y., Yoshida, M.

(1997) Structure 5: 825-836

Released	1998-03-04
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bacillus sp. PS3
Macromolecule	F1-ATPASE (protein)
Unique Ligands	SO4

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1UZ6 \| pdb_00001uz6	Download File View File

anti-Lewis X Fab fragment uncomplexed

Van Roon, A.M.M., Pannu, N.S., De Vrind, J.P.M., Hokke, C.H., Deelder, A.M., Van Der marel, G.A., Van Boom, J.H., Abrahams, J.P.

(2004) Structure 12: 1227

Released	2004-06-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mus musculus
Macromolecule	IGG FAB (IGG3, KAPPA) HEAVY CHAIN 291-2G3-A (protein) IGG FAB (IGG3, KAPPA) LIGHT CHAIN 291-2G3-A (protein)
Unique Ligands	SO4

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1UZ8 \| pdb_00001uz8	Download File View File

anti-Lewis X Fab fragment in complex with Lewis X

Van Roon, A.M.M., Pannu, N.S., De Vrind, J.P.M., Hokke, C.H., Deelder, A.M., Van Der marel, G.A., Van Boom, J.H., Abrahams, J.P.

(2004) Structure 12: 1227

Released	2004-06-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	IGG FAB (IGG3, KAPPA) HEAVY CHAIN 291-2G3-A (protein) IGG FAB (IGG3, KAPPA) LIGHT CHAIN 291-2G3-A (protein)
Unique branched monosaccharides	FUC, GAL, MAG

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1W0J \| pdb_00001w0j	Download File View File

Beryllium fluoride inhibited bovine F1-ATPase

Kagawa, R., Montgomery, M.G., Braig, K., Walker, J.E., Leslie, A.G.W.

(2004) EMBO J 23: 2734

Released	2004-07-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	ATP SYNTHASE ALPHA CHAIN HEART ISOFORM, MITOCHONDRIAL PRECURSOR (protein) ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR (protein) ATP SYNTHASE GAMMA CHAIN, MITOCHONDRIAL PRECURSOR (protein)
Unique Ligands	ADP, BEF, GOL, MG, PO4

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1W0K \| pdb_00001w0k	Download File View File

ADP inhibited bovine F1-ATPase

Kagawa, R., Montgomery, M.G., Braig, K., Walker, J.E., Leslie, A.G.W.

(2004) EMBO J 23: 2734

Released	2004-07-08
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Bos taurus
Macromolecule	ATP SYNTHASE ALPHA CHAIN HEART ISOFORM, MITOCHONDRIAL PRECURSOR (protein) ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR (protein) ATP SYNTHASE GAMMA CHAIN, MITOCHONDRIAL PRECURSOR (protein)
Unique Ligands	ADP, GOL, MG, PO4