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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Bao, J."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Influenza A virus (A/Viet Nam/1203/2004(H5N1)) (7)
	Aquifex aeolicus VF5 (5)
	Homo sapiens (5)
	Severe acute respiratory syndrome coronavirus 2 (5)
	Polygonatum cyrtonema (3)
	synthetic construct (3)
	Claviceps fusiformis (2)
	Human betacoronavirus 2c EMC/2012 (2)
	Vicugna pacos (2)
	Drosophila melanogaster (1)

More...

Taxonomy

	Eukaryota (15)
	Riboviria (15)
	Bacteria (5)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (25)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (4)
	2.0 - 2.5 (12)
	2.5 - 3.0 (8)
	3.0 - 3.5 (2)
	> 4.5 (1)

Release Date

	2010 - 2014 (15)
	2015 - 2019 (6)
	2020 - 2024 (8)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (6)
	Hydrolases (10)
	Oxidoreductases (2)

Membrane Protein Annotation

	OPM (7)
	PDBTM (7)
	MemProtMD (5)
	mpstruc (1)

Symmetry Type

	Asymmetric (24)
	Cyclic (8)

SCOP Classification

	Alpha and beta proteins (a/b) (9)
	All beta proteins (5)
	Artifacts (1)

AllSelected

1 to 25 of 31 Structures

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2MAH \| pdb_00002mah	Download File View File

Solution structure of Smoothened

Rana, R., Lee, H., Zheng, J.J.

(2013) Nat Commun 4: 2965-2965

Released	2014-03-05
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	Protein smoothened (protein)

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2MT5 \| pdb_00002mt5	Download File View File

Isolated Ring domain

Brown, N.G., Watson, E.R., Weissman, F., Royappa, G., Schulman, B., Jarvis, M., Vanderlinden, R., Frye, J.J., Qiao, R., Petzold, G., Peters, J., Stark, H.

(2014) Mol Cell 56: 246-260

Released	2014-10-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 11 (protein)
Unique Ligands	ZN

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3A0C \| pdb_00003a0c	Download File View File

Crystal Structure of an anti-HIV mannose-binding lectin from Polygonatum cyrtonema Hua

Ding, J., Wang, D.C.

(2010) J Struct Biol 171: 309-317

Released	2010-03-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Polygonatum cyrtonema
Macromolecule	Mannose/sialic acid-binding lectin (protein)

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3A0D \| pdb_00003a0d	Download File View File

Crystal Structure of Polygonatum cyrtonema lectin (PCL) complexed with monomannoside

Ding, J., Wang, D.C.

(2010) J Struct Biol 171: 309-317

Released	2010-03-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Polygonatum cyrtonema
Macromolecule	Mannose/sialic acid-binding lectin (protein)
Unique Ligands	MMA, SO4

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3A0E \| pdb_00003a0e	Download File View File

Crystal Structure of Polygonatum cyrtonema lectin (PCL) complexed with dimannoside

Ding, J., Wang, D.C.

(2010) J Struct Biol 171: 309-317

Released	2010-03-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Polygonatum cyrtonema
Macromolecule	Mannose/sialic acid-binding lectin (protein)
Unique Ligands	SO4
Unique branched monosaccharides	MAN

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4E5E \| pdb_00004e5e	Download File View File

Crystal structure of avian influenza virus PAn Apo

DuBois, R.M., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.048 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	MN, SO4

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4E5F \| pdb_00004e5f	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 1

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.392 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	0N7, MN, SO4

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4E5G \| pdb_00004e5g	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 2

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.647 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	MN, SO4, XI7

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4E5H \| pdb_00004e5h	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 3

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.158 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	0N8, MN, SO4

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4E5I \| pdb_00004e5i	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 4

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.944 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	0N9, MN, SO4

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4E5J \| pdb_00004e5j	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 5

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	581, MN, SO4

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4E5L \| pdb_00004e5l	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 6

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.469 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	DBH, MN, SO4

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4KQZ \| pdb_00004kqz	Download File View File

structure of the receptor binding domain (RBD) of MERS-CoV spike

Lu, G., Hu, Y., Wang, Q., Qi, J., Gao, F., Li, Y., Zhang, Y., Zhang, W., Yuan, Y., Bao, J., Zhang, B., Shi, Y., Yan, J., Gao, G.F.

(2013) Nature 500: 227-231

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.514 Å
Organisms	Human betacoronavirus 2c EMC/2012
Macromolecule	S protein (protein)
Unique Ligands	NAG

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4KR0 \| pdb_00004kr0	Download File View File

Complex structure of MERS-CoV spike RBD bound to CD26

Lu, G., Hu, Y., Wang, Q., Qi, J., Gao, F., Li, Y., Zhang, Y., Zhang, W., Yuan, Y., Zhang, B., Shi, Y., Yan, J., Gao, G.F.

(2013) Nature 500: 227-231

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.702 Å
Organisms	Homo sapiens Human betacoronavirus 2c EMC/2012
Macromolecule	Dipeptidyl peptidase 4 (protein) S protein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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4R2Y \| pdb_00004r2y	Download File View File

Crystal structure of APC11 RING domain

Brown, N.G., Watson, E.R., Weissmann, F., Jarvis, M.A., Vanderlinden, R., Grace, C.R.R., Frye, J.J., Dube, P., Qiao, R., Petzold, G., Cho, S.E., Alsharif, O., Bao, J., Zheng, J., Nourse, A., Kurinov, I., Peters, J.M., Stark, H., Schulman, B.A.

(2014) Mol Cell 56: 246-260

Released	2014-10-29
Method	X-RAY DIFFRACTION 1.755 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 11 (protein)
Unique Ligands	ZN

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5XJ5 \| pdb_00005xj5	Download File View File

Crystal structure of PlsY (YgiH), an integral membrane glycerol 3-phosphate acyltransferase - the monoacylglycerol form

Li, Z., Li, D.

(2017) Nat Commun 8: 1691-1691

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.481 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Glycerol-3-phosphate acyltransferase (protein)
Unique Ligands	78M, GLY, PGE, SO4

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5XJ6 \| pdb_00005xj6	Download File View File

Crystal structure of PlsY (YgiH), an integral membrane glycerol 3-phosphate acyltransferase - the glycerol 3-phosphate form

Li, Z., Tang, Y., Li, D.

(2017) Nat Commun 8: 1691-1691

Released	2017-12-06
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Glycerol-3-phosphate acyltransferase (protein)
Unique Ligands	G3P, OLC, PO4

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5XJ7 \| pdb_00005xj7	Download File View File

Crystal structure of PlsY (YgiH), an integral membrane glycerol 3-phosphate acyltransferase - the acyl phosphate form

Tang, Y., Li, Z., Li, D.

(2017) Nat Commun 8: 1691-1691

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.772 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Glycerol-3-phosphate acyltransferase (protein)
Unique Ligands	78M, 87O, K, PO4

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5XJ8 \| pdb_00005xj8	Download File View File

Crystal structure of PlsY (YgiH), an integral membrane glycerol 3-phosphate acyltransferase - the lysphosphatidic acid form

Li, Z., Tang, Y., Li, D.

(2017) Nat Commun 8: 1691-1691

Released	2017-12-06
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Glycerol-3-phosphate acyltransferase (protein)
Unique Ligands	NKO, PO4

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5XJ9 \| pdb_00005xj9	Download File View File

Crystal structure of PlsY (YgiH), an integral membrane glycerol 3-phosphate acyltransferase - the orthophosphate form

Li, Z., Tang, Y., Li, D.

(2017) Nat Commun 8: 1691-1691

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Glycerol-3-phosphate acyltransferase (protein)
Unique Ligands	78M, PO4

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6L8Q \| pdb_00006l8q	Download File View File

Complex structure of bat CD26 and MERS-RBD

Yuan, Y.

(2020) J Virol 94:

Released	2019-12-04
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Middle East respiratory syndrome-related coronavirus Myotis davidii
Macromolecule	Dipeptidyl peptidase 4 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7C8V \| pdb_00007c8v	Download File View File

Structure of sybody SR4 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD)

Li, T., Yao, H., Cai, H., Qin, W., Li, D.

(2021) Nat Commun 12: 4635-4635

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike protein S1 (protein) Synthetic nanobody SR4 (protein)
Unique Ligands	GOL, NAG

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7C8W \| pdb_00007c8w	Download File View File

Structure of sybody MR17 in complex with the SARS-CoV-2 S receptor-binding domain (RBD)

Li, T., Cai, H., Yao, H., Qin, W., Li, D.

(2021) Nat Commun 12: 4635-4635

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike protein S1 (protein) Synthetic nanobody MR17 (protein)
Unique Ligands	GOL
Unique branched monosaccharides	FUC, NAG

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7CAN \| pdb_00007can	Download File View File

Structure of sybody MR17-K99Y in complex with the SARS-CoV-2 S Receptor-binding domain (RBD)

Li, T., Yao, H., Cai, H., Qin, W., Li, D.

(2021) Nat Commun 12: 4635-4635

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike protein S1 (protein) sybody MR17-K99Y (protein)
Unique Ligands	GOL
Unique branched monosaccharides	FUC, NAG

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7F5G \| pdb_00007f5g	Download File View File

The crystal structure of RBD-Nanobody complex, DL4 (SA4)

Li, T., Lai, Y., Zhou, Y., Tan, J., Li, D.

(2022) Int J Biol Macromol 209: 1379-1388

Released	2022-05-25
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Vicugna pacos
Macromolecule	Nanobody DL4 (protein) Spike glycoprotein (protein)
Unique Ligands	ACT, GOL
Unique branched monosaccharides	FUC, NAG

1 to 25 of 31 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2MAH | pdb_00002mah

2MT5 | pdb_00002mt5

3A0C | pdb_00003a0c

3A0D | pdb_00003a0d

3A0E | pdb_00003a0e

4E5E | pdb_00004e5e

4E5F | pdb_00004e5f

4E5G | pdb_00004e5g

4E5H | pdb_00004e5h

4E5I | pdb_00004e5i

4E5J | pdb_00004e5j

4E5L | pdb_00004e5l

4KQZ | pdb_00004kqz

4KR0 | pdb_00004kr0

4R2Y | pdb_00004r2y

5XJ5 | pdb_00005xj5

5XJ6 | pdb_00005xj6

5XJ7 | pdb_00005xj7

5XJ8 | pdb_00005xj8

5XJ9 | pdb_00005xj9

6L8Q | pdb_00006l8q

7C8V | pdb_00007c8v

7C8W | pdb_00007c8w

7CAN | pdb_00007can

7F5G | pdb_00007f5g