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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Cheng, X.Y."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Homo sapiens (12)
	Ovis aries (2)
	Bos taurus (1)
	Escherichia coli (1)
	Escherichia coli K-12 (1)
	Lactobacillaceae (1)
	Mycolicibacterium neoaurum (1)
	Rhodococcus erythropolis (1)
	Saccharomyces cerevisiae S288C (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (14)
	Bacteria (5)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (5)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (10)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (2)
	Oxidoreductases (2)
	Transferases (2)

Membrane Protein Annotation

	MemProtMD (3)
	PDBTM (3)
	mpstruc (1)

Symmetry Type

	Asymmetric (12)
	Cyclic (4)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	All alpha proteins (5)
	Artifacts (3)

AllSelected

1 to 17 of 17 Structures

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5YVE \| pdb_00005yve	Download File View File

Crystal structure of human P2X3 receptor in complex with the AF-219 negative allosteric modulator

Wang, Y., Hattori, M.

(2018) Proc Natl Acad Sci U S A 115: 4939-4944

Released	2018-04-04
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	P2X purinoceptor 3 (protein)
Unique Ligands	AF9, MG, NA, NAG

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5Z02 \| pdb_00005z02	Download File View File

Crystal structure of HIS6-tagged Mdm2 with nutlin-3a

Su, Z.D., Cheng, X.Y., Chen, R., Pi, N.

To be published

Released	2018-01-03
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	NUT

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5Z3R \| pdb_00005z3r	Download File View File

Crystal Structure of Delta 5-3-Ketosteroid Isomerase from Mycobacterium sp.

Cheng, X.Y., Peng, F., Yang, F., Huang, Y.Q., Su, Z.D.

(2019) Biochim Biophys Acta Proteins Proteom 1867: 821-830

Released	2018-01-31
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Mycolicibacterium neoaurum
Macromolecule	Steroid delta-isomerase (protein)

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5ZUT \| pdb_00005zut	Download File View File

Crystal Structure of Yeast PCNA in Complex with N24 Peptide

Cheng, X.Y., Kuang, X.L., Zhou, Y., Xia, X.M., SU, Z.D.

To be published

Released	2018-05-30
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	N24 (protein) Proliferating cell nuclear antigen (protein)

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5ZXF \| pdb_00005zxf	Download File View File

The 1.25A Crystal structure of His6-tagged Mdm2 in complex with nutlin-3a

Cheng, X.Y., Su, Z.D., Pi, N., Cao, C.Z., Zhao, Z.T., Zhou, J.J., Chen, R., Kuang, Z.K., Huang, Y.Q.

To be published

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	NUT

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7C3Q \| pdb_00007c3q	Download File View File

Human MdmX protein in complex with Nutlin3a

Su, Z.D., Cheng, X.Y., Zhang, B.L., Kuang, Z.K., Yang, J., Li, Z.C., Yu, J.P., Zhao, Z.T., Cao, C.Z.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.801 Å
Organisms	Homo sapiens
Macromolecule	Protein Mdm4 (protein)
Unique Ligands	NUT, O4B, PEG

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7C3Y \| pdb_00007c3y	Download File View File

Crystal structure of the N-terminal domain of human MdmX protein in complex with Nutlin3a

Su, Z.D., Cheng, X.Y., Zhang, B.L., Kuang, Z.K., Yang, J., Li, Z.C., Yu, J.P., Zhao, Z.T., Cao, C.Z.

To be published

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.632 Å
Organisms	Homo sapiens
Macromolecule	Protein Mdm4 (protein)
Unique Ligands	NUT, O4B

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7C44 \| pdb_00007c44	Download File View File

Crystal structure of the p53-binding domain of human MdmX protein in complex with Nutlin3a

Cheng, X.Y., Zhang, B.L., Kuang, Z.K., Yang, J., Li, Z.C., Yu, J.P., Zhao, Z.T., Cao, C.Z., Su, Z.D.

To be published

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Protein Mdm4 (protein)
Unique Ligands	NUT, O4B

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7EL4 \| pdb_00007el4	Download File View File

The crystal structure of p53p peptide fragment in complex with the N-terminal domain of MdmX

Cheng, X.Y., Zhang, B.L., Li, Z.C., Kuang, Z.K., Su, Z.D.

To be published

Released	2021-06-09
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53,Protein Mdm4 (protein)
Unique Ligands	MG, O4B

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8HDG \| pdb_00008hdg	Download File View File

Small peptide enhances the binding of nutline-3a to MdmX

Cheng, X.Y., Huang, Y., Wei, Q.Y., Huang, J.J., Peng, Y.W., Su, Z.D.

To be published

Released	2022-11-30
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Uncharacterized protein DKFZp686B01123 (protein)
Unique Ligands	NUT, O4B

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8IA5 \| pdb_00008ia5	Download File View File

Small peptide enhances the binding of nutline-3a to N-terminal domain of MdmX

Cheng, X.Y., Wei, Q.Y., Huang, Y., Su, Z.D.

To be published

Released	2023-02-22
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	9-mer peptide (protein) Protein Mdm4 (protein)
Unique Ligands	NUT, O4B

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8JBZ \| pdb_00008jbz	Download File View File

Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 4-androstadiene-3,17- dione

Hu, Y.L., Li, X., Cheng, X.Y., Song, S.K., Su, Z.D.

To be published

Released	2023-05-31
Method	X-RAY DIFFRACTION 2.079 Å
Organisms	Rhodococcus erythropolis
Macromolecule	3-ketosteroid dehydrogenase (protein)
Unique Ligands	ASD, FAD

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8JUH \| pdb_00008juh	Download File View File

Crystal structure of ScFv against the receptor binding domine of SARS-CoV-2 S-spike protein

Ma, Q.Q., Su, Z.D.

To be published

Released	2023-08-23
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Ovis aries
Macromolecule	Single chain fab antibody (protein)

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8KCN \| pdb_00008kcn	Download File View File

X-ray structure of 3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase mutant

Song, S.K., Ma, Q.Q., Lv, D.Q., Cheng, C.Y., Su, Z.D.

To be published

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Lactobacillaceae
Macromolecule	NADP-dependent (R)-specific alcohol dehydrogenase (protein)

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8KGZ \| pdb_00008kgz	Download File View File

Crystal structure of single-chain Fv antibody against antigen peptide from SARS-CoV2 S-spike protein

Ma, Q.Q., Zhang, B.L., Cheng, X.Y., Huang, Y.Q., Su, Z.D.

To be published

Released	2023-11-08
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Escherichia coli K-12 Ovis aries
Macromolecule	Thioredoxin 1,scFv (protein)

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8XML \| pdb_00008xml	Download File View File

Cryo-EM structure of the Apo CCR8-Gi complex

Peng, Q., Jiang, H.H., Cheng, X.Y., Li, J., Zhang, J.

To be published

Released	2025-01-01
Method	ELECTRON MICROSCOPY 2.58 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) Soluble cytochrome b562,C-C chemokine receptor type 8 (protein) scFv16 (protein)

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8Y01 \| pdb_00008y01	Download File View File

Cryo-EM structure of Medium-wave-sensitive opsin 1

Peng, Q., Jiang, H.H., Cheng, X.Y., Li, J., Zhang, J.

To be published

Released	2025-02-12
Method	ELECTRON MICROSCOPY 2.48 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) Medium-wave-sensitive opsin 1 (protein) scFv Recombinant Human Monoclonal Antibody (scFv16) (protein)
Unique Ligands	RET

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5YVE | pdb_00005yve

Crystal structure of human P2X3 receptor in complex with the AF-219 negative allosteric modulator

5Z02 | pdb_00005z02

Crystal structure of HIS6-tagged Mdm2 with nutlin-3a

5Z3R | pdb_00005z3r

Crystal Structure of Delta 5-3-Ketosteroid Isomerase from Mycobacterium sp.

5ZUT | pdb_00005zut

Crystal Structure of Yeast PCNA in Complex with N24 Peptide

5ZXF | pdb_00005zxf

The 1.25A Crystal structure of His6-tagged Mdm2 in complex with nutlin-3a

7C3Q | pdb_00007c3q

Human MdmX protein in complex with Nutlin3a

7C3Y | pdb_00007c3y

Crystal structure of the N-terminal domain of human MdmX protein in complex with Nutlin3a

7C44 | pdb_00007c44

Crystal structure of the p53-binding domain of human MdmX protein in complex with Nutlin3a

7EL4 | pdb_00007el4

The crystal structure of p53p peptide fragment in complex with the N-terminal domain of MdmX

8HDG | pdb_00008hdg

Small peptide enhances the binding of nutline-3a to MdmX

8IA5 | pdb_00008ia5

Small peptide enhances the binding of nutline-3a to N-terminal domain of MdmX

8JBZ | pdb_00008jbz

Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 4-androstadiene-3,17- dione

8JUH | pdb_00008juh

Crystal structure of ScFv against the receptor binding domine of SARS-CoV-2 S-spike protein

8KCN | pdb_00008kcn

X-ray structure of 3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase mutant

8KGZ | pdb_00008kgz

Crystal structure of single-chain Fv antibody against antigen peptide from SARS-CoV2 S-spike protein

8XML | pdb_00008xml

Cryo-EM structure of the Apo CCR8-Gi complex

8Y01 | pdb_00008y01

Cryo-EM structure of Medium-wave-sensitive opsin 1

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5YVE | pdb_00005yve

5Z02 | pdb_00005z02

5Z3R | pdb_00005z3r

5ZUT | pdb_00005zut

5ZXF | pdb_00005zxf

7C3Q | pdb_00007c3q

7C3Y | pdb_00007c3y

7C44 | pdb_00007c44

7EL4 | pdb_00007el4

8HDG | pdb_00008hdg

8IA5 | pdb_00008ia5

8JBZ | pdb_00008jbz

8JUH | pdb_00008juh

8KCN | pdb_00008kcn

8KGZ | pdb_00008kgz

8XML | pdb_00008xml

8Y01 | pdb_00008y01