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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Dai, L."

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Search Summary

This query matches 171 Structures.

Refinements

Structure Determination Methodology

experimental (171)

Scientific Name of Source Organism

	Homo sapiens (62)
	Aetokthonos hydrillicola Thurmond2011 (11)
	Severe acute respiratory syndrome coronavirus 2 (9)
	Echovirus E6 (7)
	Meyerozyma guilliermondii (7)
	Zika virus (7)
	Echinochloa colona (6)
	Campylobacter jejuni (5)
	Methanosarcina acetivorans C2A (5)
	Mus musculus (5)

More...

Taxonomy

	Eukaryota (94)
	Bacteria (61)
	Riboviria (38)
	Archaea (5)
	other sequences (5)
	Eukaryota (eukaryotes) (2)
	Riboviria (RNA viruses and viroids) (2)

Experimental Method

	X-RAY DIFFRACTION (119)
	ELECTRON MICROSCOPY (46)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (171)
	DNA (10)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (45)
	2.0 - 2.5 (41)
	2.5 - 3.0 (33)
	3.0 - 3.5 (25)
	3.5 - 4.0 (10)
	4.0 - 4.5 (1)
	> 4.5 (3)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (4)
	2010 - 2014 (5)
	2015 - 2019 (41)
	2020 - 2024 (115)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (24)
	Transferases (9)
	Oxidoreductases (8)
	Lyases (3)

Membrane Protein Annotation

	PDBTM (18)
	mpstruc (14)
	MemProtMD (7)
	OPM (6)

Symmetry Type

	Asymmetric (87)
	Cyclic (64)
	Dihedral (11)
	Icosahedral (8)
	Helical (1)

SCOP Classification

	All beta proteins (16)
	All alpha proteins (11)
	Membrane and cell surface proteins and peptides (11)
	Artifacts (11)
	Alpha and beta proteins (a/b) (4)
	Small proteins (4)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 171 Structures

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1WMT \| pdb_00001wmt	Download File View File

Scorpion toxin (IsTX) from Opisthacanthus madagascariensis

Yamaji, N., Dai, L., Sugase, K., Andriantsiferana, M., Nakajima, T., Iwashita, T.

(2004) Eur J Biochem 271: 3855-3864

Released	2004-10-19
Method	SOLUTION NMR
Organisms	Opisthacanthus madagascariensis
Macromolecule	IsTX (protein)

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1WQC \| pdb_00001wqc	Download File View File

An unusual fold for potassium channel blockers : NMR structure of three toxins from the scorpion Opisthacanthus madagascariensis

Chagot, B., Pimentel, C., Dai, L., Pil, J., Tytgat, J., Nakajima, T., Corzo, G., Darbon, H., Ferrat, G.

(2005) Biochem J 388: 263-271

Released	2005-01-18
Method	SOLUTION NMR
Organisms	Opisthacanthus madagascariensis
Macromolecule	OmTx1 (protein)

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1WQD \| pdb_00001wqd	Download File View File

An unusual fold for potassium channel blockers: NMR structure of three toxins from the scorpion Opisthacanthus madagascariensis

Chagot, B., Pimentel, C., Dai, L., Pil, J., Tytgat, J., Nakajima, T., Corzo, G., Darbon, H., Ferrat, G.

(2005) Biochem J 388: 263-271

Released	2005-01-18
Method	SOLUTION NMR
Organisms	Opisthacanthus madagascariensis
Macromolecule	OmTx2 (protein)

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1WQE \| pdb_00001wqe	Download File View File

An unusual fold for potassium channel blockers: NMR structure of three toxins from the scorpion Opisthacanthus madagascariensis

Chagot, B., Pimentel, C., Dai, L., Pil, J., Tytgat, J., Nakajima, T., Corzo, G., Darbon, H., Ferrat, G.

(2005) Biochem J 388: 263-271

Released	2005-01-18
Method	SOLUTION NMR
Organisms	Opisthacanthus madagascariensis
Macromolecule	OmTx3 (protein)

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1Y29 \| pdb_00001y29	Download File View File

Three dimensional solution structure of huwentoxin-x by 2D 1H-NMR

Liu, Z., Liang, S.

(2006) J Biological Chem 281: 8628-8635

Released	2004-12-07
Method	SOLUTION NMR
Organisms	Cyriopagopus schmidti
Macromolecule	huwentoxin-x (protein)

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2JOO \| pdb_00002joo	Download File View File

The NMR Solution Structure of Recombinant RGD-hirudin

Song, X., Mo, W., Liu, X., Yan, X., Song, H., Dai, L.

(2007) Biochem Biophys Res Commun 360: 103-108

Released	2008-03-18
Method	SOLUTION NMR
Organisms	Hirudo medicinalis
Macromolecule	Hirudin variant-1 (protein)

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3JTS \| pdb_00003jts	Download File View File

GY9-Mamu-A*02-hb2m

Dai, L., Feng, Y., Qi, J., Gao, G.F.

To be published

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.801 Å
Organisms	Homo sapiens Macaca mulatta Simian immunodeficiency virus (isolate PBj14/BCL-3)
Macromolecule	Beta-2-microglobulin (protein) MHC class I Mamu-A*02 (protein) peptide of Gag-Pol polyprotein (protein)

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3JTT \| pdb_00003jtt	Download File View File

Cystal structure of Rhesus macaque MHC class I:Mamu-A*02

Dai, L., Feng, Y., Qi, J., Gao, G.F.

To be published

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Macaca mulatta Simian immunodeficiency virus
Macromolecule	Beta-2-microglobulin (protein) MHC class I Mamu-A*02 (protein) peptide of Protein Nef (protein)

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3V6G \| pdb_00003v6g	Download File View File

Crystal Structure of Transcriptional Regulator

Do, S.V., Bolla, J.R., Chen, X., Yu, E.W.

(2012) Nucleic Acids Res 40: 9340-9355

Released	2012-08-08
Method	X-RAY DIFFRACTION 1.821 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY DEOR-FAMILY) (protein)

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3V78 \| pdb_00003v78	Download File View File

Crystal Structure of Transcriptional Regulator

Do, S.V., Bolla, J.R., Chen, X., Yu, E.W.

(2012) Nucleic Acids Res 40: 9340-9355

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.299 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY DEOR-FAMILY) (protein)
Unique Ligands	ET

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4NFT \| pdb_00004nft	Download File View File

Crystal structure of human lnkH2B-h2A.Z-Anp32e

Shan, S., Pan, L., Mao, Z., Wang, W., Sun, J., Dong, Q., Liang, X., Ding, X., Chen, S., Dai, L., Zhang, Z., Zhu, B., Zhou, Z.

(2014) Cell Res 24: 389-399

Released	2014-04-09
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens
Macromolecule	Acidic leucine-rich nuclear phosphoprotein 32 family member E (protein) Histone H2B type 2-E, Histone H2A.Z (protein)

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5GZN \| pdb_00005gzn	Download File View File

Structure of neutralizing antibody bound to Zika envelope protein

Wang, Q., Yang, H., Liu, X., Dai, L., Ma, T., Qi, J., Wong, G., Peng, R., Liu, S., Li, J., Li, S., Song, J., Liu, J., He, J., Yuan, H., Xiong, Y., Liao, Y., Li, J., Yang, J., Tong, Z., Griffin, B., Bi, Y., Liang, M., Xu, X., Cheng, G., Wang, P., Qiu, X., Kobinger, G., Shi, Y., Yan, J., Gao, G.F.

(2016) Sci Transl Med 8: 369ra179-369ra179

Released	2016-12-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Zika virus
Macromolecule	Antibody Heavy chain (protein) Antibody light chain (protein) Genome polyprotein (protein)

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5GZO \| pdb_00005gzo	Download File View File

Structure of neutralizing antibody bound to Zika envelope protein

(2016) Sci Transl Med 8: 369ra179-369ra179

Released	2017-01-18
Method	X-RAY DIFFRACTION 2.755 Å
Organisms	Homo sapiens Zika virus
Macromolecule	Antibody heavy chain (protein) Antibody light chain (protein) Genome polyprotein (protein)

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5GZR \| pdb_00005gzr	Download File View File

Zika virus E protein complexed with a neutralizing antibody Z23-Fab

Gao, G.G., Shi, Y., Peng, R., Liu, S.

(2016) Sci Transl Med 8: 369ra179-369ra179

Released	2016-11-30
Method	ELECTRON MICROSCOPY 9.4 Å
Organisms	Homo sapiens Zika virus
Macromolecule	Z23 Fab heavy chain (protein) Z23 Fab light chain (protein) structural protein E (protein) strutural protein M (protein)

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5JHL \| pdb_00005jhl	Download File View File

Crystal structure of zika virus envelope protein in complex with a flavivirus broadly-protective antibody

Dai, L., Shi, Y., Qi, J., Gao, G.F.

(2016) Cell Host Microbe 19: 696-704

Released	2016-05-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus Zika virus
Macromolecule	Antibody Heavy chain (protein) antibody Light chain (protein) envelope protein (protein)

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5JHM \| pdb_00005jhm	Download File View File

Crystal structure of Zika virus Envelope protein

Dai, L., Shi, Y., Qi, J., Gao, G.F.

(2016) Cell Host Microbe 19: 696-704

Released	2016-05-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Zika virus
Macromolecule	Envelope protein (protein)

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5LQ3 \| pdb_00005lq3	Download File View File

Structures and transport dynamics of the Campylobacter jejuni multidrug efflux pump CmeB

Su, C.C.

(2017) Nat Commun 8: 171-171

Released	2017-08-09
Method	X-RAY DIFFRACTION 3.55 Å
Organisms	Campylobacter jejuni
Macromolecule	CmeB (protein)

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5NJ2 \| pdb_00005nj2	Download File View File

Crystal structure of BlaC from Mycobacterium tuberculosis bound to phosphate

Tassoni, R., Pannu, N.S., Ubbink, M.

(2017) Biochemistry 56: 6257-6267

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.19 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Beta-lactamase (protein)
Unique Ligands	ACT, AE4, ETE, PO4

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5OYO \| pdb_00005oyo	Download File View File

Crystal structure of BlaC from Mycobacterium tuberculosis

Tassoni, R., Pannu, N.S.

(2017) Biochemistry 56: 6257-6267

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Beta-lactamase (protein)
Unique Ligands	ACT, GOL, PGE

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5T0O \| pdb_00005t0o	Download File View File

Crystal Structure of a membrane protein

Su, C.-C., Yu, E.W.

(2017) Nat Commun 8: 171-171

Released	2017-09-06
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Campylobacter jejuni
Macromolecule	CmeB (protein)

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5WA5 \| pdb_00005wa5	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor XMD11-50

Xu, X., Blacklow, S.C.

(2018) ACS Chem Biol 13: 2438-2448

Released	2018-07-04
Method	X-RAY DIFFRACTION 1.172 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	4K4, EDO

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5WY2 \| pdb_00005wy2	Download File View File

Human Snx5 PX domain in complex with Chlamydia IncE C terminus

Sun, Q., Yong, X., Jia, D.

(2017) Signal Transduct Target Ther 2: 17030-17030

Released	2017-11-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Chlamydia trachomatis Homo sapiens
Macromolecule	IncE (protein) Sorting nexin-5 (protein)

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5ZNC \| pdb_00005znc	Download File View File

Plasmodium falciparum purine nucleoside phosphorylase in complex with quinine

Chen, D., Nordlund, P.

(2019) Sci Transl Med 11:

Released	2019-01-16
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Plasmodium falciparum
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	PO4, QI9

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5ZNI \| pdb_00005zni	Download File View File

Plasmodium falciparum purine nucleoside phosphorylase in complex with mefloquine

Chen, D., Nordlund, P., Dziekan, J.M.

(2019) Sci Transl Med 11:

Released	2019-01-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Plasmodium falciparum
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	PO4, YMZ

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5ZX9 \| pdb_00005zx9	Download File View File

Crystal structure of apo form fibronectin-binding protein Apa from Mycobacterium tuberculosis

Gao, J., Liu, W.D., Chen, C.C., Guo, R.T.

(2019) Biochim Biophys Acta Gen Subj 1863: 1351-1359

Released	2019-05-29
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Alanine and proline-rich secreted protein Apa (protein)
Unique Ligands	GOL

1 to 25 of 171 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1WMT | pdb_00001wmt

1WQC | pdb_00001wqc

1WQD | pdb_00001wqd

1WQE | pdb_00001wqe

1Y29 | pdb_00001y29

2JOO | pdb_00002joo

3JTS | pdb_00003jts

3JTT | pdb_00003jtt

3V6G | pdb_00003v6g

3V78 | pdb_00003v78

4NFT | pdb_00004nft

5GZN | pdb_00005gzn

5GZO | pdb_00005gzo

5GZR | pdb_00005gzr

5JHL | pdb_00005jhl

5JHM | pdb_00005jhm

5LQ3 | pdb_00005lq3

5NJ2 | pdb_00005nj2

5OYO | pdb_00005oyo

5T0O | pdb_00005t0o

5WA5 | pdb_00005wa5

5WY2 | pdb_00005wy2

5ZNC | pdb_00005znc

5ZNI | pdb_00005zni

5ZX9 | pdb_00005zx9