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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Fernandez, A."

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Homo sapiens (17)
	synthetic construct (4)
	Gallus gallus (1)
	Homo (1)

Taxonomy

	Eukaryota (19)
	other sequences (4)

Experimental Method

	ELECTRON MICROSCOPY (18)
	X-RAY DIFFRACTION (3)

Polymer Entity Type

Protein (21)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.5 - 3.0 (6)
	3.0 - 3.5 (11)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (1)
	2020 - 2024 (20)

Membrane Protein Annotation

mpstruc (2)

Symmetry Type

	Asymmetric (10)
	Cyclic (7)
	Helical (4)

SCOP Classification

All beta proteins (1)

AllSelected

1 to 21 of 21 Structures

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1UUE \| pdb_00001uue	Download File View File

a-SPECTRIN SH3 DOMAIN (V44T, D48G MUTANT)

Vega, M.C., Fernandez, A., Wilmanns, M., Serrano, L.

(2004) Proc Natl Acad Sci U S A 101: 2834

Released	2004-02-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Gallus gallus
Macromolecule	SPECTRIN ALPHA CHAIN (protein)

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7LMV \| pdb_00007lmv	Download File View File

SPECIFIC INHIBITOR OF INTEGRIN ALPHA-V BETA-6

Dong, X., Bera, A.K., Roy, A., Shi, L., Springer, T.A., Baker, D.

(2023) Nat Commun 14: 5660-5660

Released	2022-08-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	synthetic construct
Macromolecule	Integrin inhibitor (protein)

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7LMX \| pdb_00007lmx	Download File View File

A HIGHLY SPECIFIC INHIBITOR OF INTEGRIN ALPHA-V BETA-6 WITH A DISULFIDE

Dong, X., Bera, A.K., Roy, A., Shi, L., Springer, T.A., Baker, D.

(2023) Nat Commun 14: 5660-5660

Released	2022-08-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	synthetic construct
Macromolecule	Integrin inhibitor (protein)

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7MKF \| pdb_00007mkf	Download File View File

Paired helical tau filament extracted from PrP-CAA Patient brain tissue | tau filament | PHF Tau

Hoq, M.R.

(2021) Acta Neuropathol 142: 227-241

Released	2021-07-28
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Isoform Tau-F of Microtubule-associated protein tau (protein)

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7MKG \| pdb_00007mkg	Download File View File

Straight tau filament extracted from PrP-CAA Patient brain tissue | tau filament | SF Tau

Hoq, M.R.

(2021) Acta Neuropathol 142: 227-241

Released	2021-07-28
Method	ELECTRON MICROSCOPY 3.07 Å
Organisms	Homo sapiens
Macromolecule	Isoform Tau-F of Microtubule-associated protein tau (protein)

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7MKH \| pdb_00007mkh	Download File View File

Paired helical tau filament extracted from GSS Patient brain tissue | tau filament from Gerstmann Straussler Scheinker disease | PHF Tau

Hoq, M.R.

(2021) Acta Neuropathol 142: 227-241

Released	2021-07-28
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	Isoform Tau-F of Microtubule-associated protein tau (protein)

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7TMC \| pdb_00007tmc	Download File View File

TMEM106B singlet filament extracted from MSTD neurodegenerative human brain

Hoq, M.R., Bharath, S.R., Jiang, W.

(2023) Acta Neuropathol 145: 707-710

Released	2023-01-25
Method	ELECTRON MICROSCOPY 3.25 Å
Organisms	Homo sapiens
Macromolecule	Transmembrane protein 106B (protein)
Unique Ligands	NAG

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7UMQ \| pdb_00007umq	Download File View File

Structure of Type I Prion filaments from Gerstmann-Straussler-Scheinker disease

Ozcan, K.A., Hoq, M.R., Bharath, S.R., Jiang, W.

(2022) Acta Neuropathol 144: 509-520

Released	2022-07-27
Method	ELECTRON MICROSCOPY 3.29 Å
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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7UN5 \| pdb_00007un5	Download File View File

Structure of Type II Prion filaments from Gerstmann-Straussler-Scheinker disease

Ozcan, K.A., Hoq, M.R., Bharath, S.R., Jiang, W.

(2022) Acta Neuropathol 144: 509-520

Released	2022-07-27
Method	ELECTRON MICROSCOPY 3.13 Å
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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8F9K \| pdb_00008f9k	Download File View File

TMEM106B doublet filaments extracted from MSTD neurodegenerative human brain

Hoq, M.R., Bharath, S.R., Jiang, W.

(2023) Acta Neuropathol 145: 707-710

Released	2023-11-22
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Transmembrane protein 106B (protein)
Unique Ligands	NAG

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8SEH \| pdb_00008seh	Download File View File

PHF Tau from Down Syndrome

Hoq, M.R., Bharath, S.R., Jiang, W., Vago, F.S.

(2024) Nat Struct Mol Biol 31: 903-909

Released	2024-04-03
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated protein tau (protein)

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8SEI \| pdb_00008sei	Download File View File

SF Tau from Down Syndrome

Hoq, M.R., Bharath, S.R., Jiang, W., Vago, F.S., Bharath, S.R.

(2024) Nat Struct Mol Biol 31: 903-909

Released	2024-04-03
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo
Macromolecule	Microtubule-associated protein tau (protein)

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8SEJ \| pdb_00008sej	Download File View File

Type I beta-amyloid 42 Filaments from Down syndrome

Hoq, M.R., Bharath, S.R., Vago, F.S., Jiang, W.

(2024) Nat Struct Mol Biol 31: 903-909

Released	2024-04-03
Method	ELECTRON MICROSCOPY 3.17 Å
Organisms	Homo sapiens
Macromolecule	Amyloid-beta protein 42 (protein)

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8SEK \| pdb_00008sek	Download File View File

Type IIIa beta-amyloid 40 Filaments from Down syndrome

Hoq, M.R., Vago, F.S., Bharath, S.R., Jiang, W.

(2024) Nat Struct Mol Biol 31: 903-909

Released	2024-04-03
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Type IIIb beta-amyloid 40 Filament (protein)

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8SEL \| pdb_00008sel	Download File View File

Type IIIb beta-amyloid 40 Filaments from Down Syndrome

Hoq, M.R., Vago, F.S., Bharath, S.R., Jiang, W.

(2024) Nat Struct Mol Biol 31: 903-909

Released	2024-04-03
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Amyloid-beta protein 40 (protein)

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8TCF \| pdb_00008tcf	Download File View File

Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf

Campbell, M.G., Fernandez, A., Roy, A., Kraft, J., Baker, D.

(2023) Nat Commun 14: 5660-5660

Released	2023-09-27
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Integrin alpha-V heavy chain (protein) Integrin beta-8 (protein) Minibinder B8_BP_dslf (protein)
Unique Ligands	CA, MG, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8TCG \| pdb_00008tcg	Download File View File

Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf

Campbell, M.G., Fernandez, A., Roy, A., Kraft, J., Baker, D.

(2023) Nat Commun 14: 5660-5660

Released	2023-09-27
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Integrin alpha-V heavy chain (protein) Integrin beta-6 (protein) Minibinder B6_BP_dslf (protein)
Unique Ligands	CA, MN, NAG
Unique branched monosaccharides	BMA, MAN, NAG