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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Gottipati, K."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Zika virus (3)
	Classical swine fever virus - Alfort/187 (2)
	Homo sapiens (2)
	Coxsackievirus B3 (1)
	Coxsackievirus B3 (strain Nancy) (1)
	Dengue virus 3 Philippines/H87/1956 (1)
	HIV whole-genome vector AA1305#18 (1)
	Human poliovirus 1 Mahoney (1)
	dengue virus type 2 (1)

Taxonomy

	Riboviria (10)
	Eukaryota (2)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

	RNA (8)
	Protein (4)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (1)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (1)
	2020 - 2024 (7)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (1)
	Hydrolases (1)

Symmetry Type

	Asymmetric (3)
	Cyclic (2)

AllSelected

1 to 11 of 11 Structures

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4H9J \| pdb_00004h9j	Download File View File

Crystal structure of N-terminal protease (Npro) of classical swine fever virus.

Gottipati, K., Ruggli, N., Gerber, M., Tratschin, J.-D., Benning, M., Bellamy, H., Choi, K.H.

(2013) PLoS Pathog 9: e1003704-e1003704

Released	2013-10-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Classical swine fever virus - Alfort/187
Macromolecule	Hog cholera virus (protein)

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4H9K \| pdb_00004h9k	Download File View File

Crystal structure of cleavage site mutant of Npro of classical swine fever virus.

Gottipati, K., Ruggli, N., Gerber, M., Tratschin, J.-D., Benning, M., Bellamy, H., Choi, K.H.

(2013) PLoS Pathog 9: e1003704-e1003704

Released	2013-10-30
Method	X-RAY DIFFRACTION 1.599 Å
Organisms	Classical swine fever virus - Alfort/187
Macromolecule	Hog cholera virus (protein)
Unique Ligands	SO4, ZN

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5CCV \| pdb_00005ccv	Download File View File

Crystal structure of full-length NS5 from dengue virus type 3

Klema, V.J., Choi, K.H.

(2016) PLoS Pathog 12: e1005451-e1005451

Released	2016-02-03
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Dengue virus 3 Philippines/H87/1956
Macromolecule	RNA-directed RNA polymerase NS5 (protein)
Unique Ligands	SAH, ZN

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7LYF \| pdb_00007lyf	Download File View File

Dengue virus RNA promoter stem-loop A fused with tRNA-scaffold

Lee, E.H., Choi, K.H.

(2021) Nat Commun 12: 2530-2530

Released	2021-05-12
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	dengue virus type 2
Macromolecule	RNA promoter stem-loop A fused with tRNA (nucleic acid)
Unique Ligands	MG

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7LYG \| pdb_00007lyg	Download File View File

Zika virus RNA promoter stem-loop A with tRNA-scaffold

Lee, E.H., Choi, K.H.

(2021) Nat Commun 12: 2530-2530

Released	2021-05-12
Method	X-RAY DIFFRACTION 3.804 Å
Organisms	Zika virus
Macromolecule	RNA promoter stem-loop A fused with tRNA (nucleic acid)

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8S95 \| pdb_00008s95	Download File View File

Crystal Structure of Poliovirus (type 1 Mahoney) cloverleaf RNA with tRNA scaffold

McNeme, S.C., Choi, K.H.

(2023) Nucleic Acids Res 51: 8850-8863

Released	2023-08-09
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Human poliovirus 1 Mahoney
Macromolecule	Lysine tRNA scaffold,Poliovirus cloverleaf RNA (nucleic acid)

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8SP9 \| pdb_00008sp9	Download File View File

Crystal Structure of Coxsackievirus B3 (CVB3) Cloverleaf RNA with tRNA scaffold

Gottipati, K., McNeme, S.C., Choi, K.H.

(2023) Nucleic Acids Res 51: 8850-8863

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.92 Å
Organisms	Coxsackievirus B3 Homo sapiens
Macromolecule	tRNA scaffold,CVB3 Cloverleaf RNA (nucleic acid)

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8TQX \| pdb_00008tqx	Download File View File

Crystal structure of the Zika virus stem-loop A (SLA) bottom stem

Tipo, J., Gottipati, K., Choi, K.H.

(2024) RNA 30: 609-623

Released	2024-03-06
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Zika virus
Macromolecule	Zika virus stem-loop A (SLA) bottom stem (nucleic acid)
Unique Ligands	GOL, MG

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8TSV \| pdb_00008tsv	Download File View File

Crystal structure of the Zika virus stem-loop A (SLA) top stem

Tipo, J., Gottipati, K., Choi, K.H.

(2024) RNA 30: 609-623

Released	2024-03-06
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Zika virus
Macromolecule	Zika virus stem-loop A (SLA) top stem (nucleic acid)
Unique Ligands	GOL, SO4

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8UO6 \| pdb_00008uo6	Download File View File

HIV-1 Rev Response Element (RRE) Stem-Loop II (SLII)

Tipo, J., Gottipati, K., Choi, K.

(2024) Nat Commun 15: 4198-4198

Released	2024-06-05
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	HIV whole-genome vector AA1305#18
Macromolecule	HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold (nucleic acid)

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9DCF \| pdb_00009dcf	Download File View File

Structure of Coxsackievirus B3 cloverleaf RNA in complex with 3Cpro dimer

Gottipati, K., Dias, D.S.A.N., Choi, K.H.

(2025) Sci Adv 11: eads6862-eads6862

Released	2025-03-26
Method	X-RAY DIFFRACTION 2.87 Å
Organisms	Coxsackievirus B3 (strain Nancy)
Macromolecule	Protease 3C (protein) cloverleaf RNA (nucleic acid)

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4H9J | pdb_00004h9j

Crystal structure of N-terminal protease (Npro) of classical swine fever virus.

4H9K | pdb_00004h9k

Crystal structure of cleavage site mutant of Npro of classical swine fever virus.

5CCV | pdb_00005ccv

Crystal structure of full-length NS5 from dengue virus type 3

7LYF | pdb_00007lyf

Dengue virus RNA promoter stem-loop A fused with tRNA-scaffold

7LYG | pdb_00007lyg

Zika virus RNA promoter stem-loop A with tRNA-scaffold

8S95 | pdb_00008s95

Crystal Structure of Poliovirus (type 1 Mahoney) cloverleaf RNA with tRNA scaffold

8SP9 | pdb_00008sp9

Crystal Structure of Coxsackievirus B3 (CVB3) Cloverleaf RNA with tRNA scaffold

8TQX | pdb_00008tqx

Crystal structure of the Zika virus stem-loop A (SLA) bottom stem

8TSV | pdb_00008tsv

Crystal structure of the Zika virus stem-loop A (SLA) top stem

8UO6 | pdb_00008uo6

HIV-1 Rev Response Element (RRE) Stem-Loop II (SLII)

9DCF | pdb_00009dcf

Structure of Coxsackievirus B3 cloverleaf RNA in complex with 3Cpro dimer

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

4H9J | pdb_00004h9j

4H9K | pdb_00004h9k

5CCV | pdb_00005ccv

7LYF | pdb_00007lyf

7LYG | pdb_00007lyg

8S95 | pdb_00008s95

8SP9 | pdb_00008sp9

8TQX | pdb_00008tqx

8TSV | pdb_00008tsv

8UO6 | pdb_00008uo6

9DCF | pdb_00009dcf