RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Hirose, M."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 95 Structures.

Refinements

Structure Determination Methodology

experimental (95)

Scientific Name of Source Organism

	Homo sapiens (27)
	Gallus gallus (18)
	Candidatus Odinarchaeum yellowstonii (11)
	Mus musculus (8)
	Vibrio alginolyticus (7)
	Glycine max (6)
	Aquifex aeolicus VF5 (5)
	Severe acute respiratory syndrome coronavirus 2 (4)
	Kangiella koreensis DSM 16069 (3)
	Synechococcus elongatus PCC 7942 = FACHB-805 (3)

More...

Taxonomy

	Eukaryota (58)
	Bacteria (28)
	Archaea (13)
	Riboviria (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (76)
	ELECTRON MICROSCOPY (19)

Polymer Entity Type

	Protein (95)
	DNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (9)
	1.0 - 1.5 (6)
	1.5 - 2.0 (16)
	2.0 - 2.5 (24)
	2.5 - 3.0 (10)
	3.0 - 3.5 (25)
	3.5 - 4.0 (5)

Release Date

	1990 - 1994 (8)
	1995 - 1999 (5)
	2000 - 2004 (13)
	2005 - 2009 (5)
	2010 - 2014 (11)
	2015 - 2019 (10)
	2020 - 2024 (30)
	2025 - 2029 (13)

Enzyme Classification Name

	Hydrolases (29)
	Oxidoreductases (3)
	Transferases (5)
	Isomerases (2)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (11)
	OPM (5)
	mpstruc (4)
	MemProtMD (1)

Symmetry Type

	Asymmetric (81)
	Cyclic (14)
	Dihedral (6)

SCOP Classification

	All beta proteins (17)
	Alpha and beta proteins (a+b) (12)
	Alpha and beta proteins (a/b) (18)
	All alpha proteins (2)
	Multi-domain proteins (alpha and beta) (2)
	Artifacts (1)

AllSelected

1 to 25 of 95 Structures

Page 1 of 4

Sort by

Explore in 3D

1AIV \| pdb_00001aiv	Download File View File

APO OVOTRANSFERRIN

Kurokawa, H., Dewan, J.C., Mikami, B., Sacchettini, J.C., Hirose, M.

(1999) J Biological Chem 274: 28445-28452

Released	1998-04-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Gallus gallus
Macromolecule	OVOTRANSFERRIN (protein)
Unique branched monosaccharides	NAG, NDG

Explore in 3D

1ARB \| pdb_00001arb	Download File View File

THE PRIMARY STRUCTURE AND STRUCTURAL CHARACTERISTICS OF ACHROMOBACTER LYTICUS PROTEASE I, A LYSINE-SPECIFIC SERINE PROTEASE

Kitagawa, Y., Katsube, Y.

(1989) J Biological Chem 264: 3832-3839

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Achromobacter lyticus
Macromolecule	ACHROMOBACTER PROTEASE I (protein)

Explore in 3D

1ARC \| pdb_00001arc	Download File View File

THE PRIMARY STRUCTURE AND STRUCTURAL CHARACTERISTICS OF ACHROMOBACTER LYTICUS PROTEASE I, A LYSINE-SPECIFIC SERINE PROTEASE

Kitagawa, Y., Katsube, Y.

(1989) J Biological Chem 264: 3832-3839

Released	1993-10-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Achromobacter lyticus
Macromolecule	ACHROMOBACTER PROTEASE I (protein)
Unique Ligands	TCK

Explore in 3D

1BFN \| pdb_00001bfn	Download File View File

BETA-AMYLASE/BETA-CYCLODEXTRIN COMPLEX

Adachi, M., Mikami, B., Katsube, T., Utsumi, S.

(1998) J Biological Chem 273: 19859-19865

Released	1998-10-28
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Glycine max
Macromolecule	BETA-AMYLASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

Explore in 3D

1BTC \| pdb_00001btc	Download File View File

THREE-DIMENSIONAL STRUCTURE OF SOYBEAN BETA-AMYLASE DETERMINED AT 3.0 ANGSTROMS RESOLUTION: PRELIMINARY CHAIN TRACING OF THE COMPLEX WITH ALPHA-CYCLODEXTRIN

Mikami, B., Hehre, E.J., Sato, M., Katsube, Y., Hirose, M., Morita, Y., Sacchettini, J.C.

(1993) Biochemistry 32: 6836-6845

Released	1993-10-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Glycine max
Macromolecule	BETA-AMYLASE (protein)
Unique Ligands	BME, SO4
Unique branched monosaccharides	GLC

Explore in 3D

1BYA \| pdb_00001bya	Download File View File

CRYSTAL STRUCTURES OF SOYBEAN BETA-AMYLASE REACTED WITH BETA-MALTOSE AND MALTAL: ACTIVE SITE COMPONENTS AND THEIR APPARENT ROLE IN CATALYSIS

Mikami, B., Degano, M., Hehre, E.J., Sacchettini, J.C.

(1994) Biochemistry 33: 7779-7787

Released	1994-07-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Glycine max
Macromolecule	BETA-AMYLASE (protein)
Unique Ligands	SO4

Explore in 3D

1BYB \| pdb_00001byb	Download File View File

CRYSTAL STRUCTURES OF SOYBEAN BETA-AMYLASE REACTED WITH BETA-MALTOSE AND MALTAL: ACTIVE SITE COMPONENTS AND THEIR APPARENT ROLE IN CATALYSIS

Mikami, B., Degano, M., Hehre, E.J., Sacchettini, J.C.

(1994) Biochemistry 33: 7779-7787

Released	1994-07-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Glycine max
Macromolecule	BETA-AMYLASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

Explore in 3D

1BYC \| pdb_00001byc	Download File View File

CRYSTAL STRUCTURES OF SOYBEAN BETA-AMYLASE REACTED WITH BETA-MALTOSE AND MALTAL: ACTIVE SITE COMPONENTS AND THEIR APPARENT ROLE IN CATALYSIS

Mikami, B., Degano, M., Hehre, E.J., Sacchettini, J.C.

(1994) Biochemistry 33: 7779-7787

Released	1994-07-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Glycine max
Macromolecule	BETA-AMYLASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BGC, GLC

Explore in 3D

1BYD \| pdb_00001byd	Download File View File

CRYSTAL STRUCTURES OF SOYBEAN BETA-AMYLASE REACTED WITH BETA-MALTOSE AND MALTAL: ACTIVE SITE COMPONENTS AND THEIR APPARENT ROLE IN CATALYSIS

Mikami, B., Degano, M., Hehre, E.J., Sacchettini, J.C.

(1994) Biochemistry 33: 7779-7787

Released	1994-07-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Glycine max
Macromolecule	BETA-AMYLASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC, RR7

Explore in 3D

1EH9 \| pdb_00001eh9	Download File View File

CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS GLYCOSYLTREHALOSE TREHALOHYDROLASE

Feese, M.D., Kato, Y., Tamada, T., Kato, M., Komeda, T., Kobayashi, K., Kuroki, R.

(2000) J Mol Biology 301: 451-464

Released	2001-02-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharolobus solfataricus
Macromolecule	GLYCOSYLTREHALOSE TREHALOHYDROLASE (protein)

Explore in 3D

1EHA \| pdb_00001eha	Download File View File

CRYSTAL STRUCTURE OF GLYCOSYLTREHALOSE TREHALOHYDROLASE FROM SULFOLOBUS SOLFATARICUS

Feese, M.D., Kato, Y., Tamada, T., Kato, M., Komeda, T., Kobayashi, K., Kuroki, R.

(2000) J Mol Biology 301: 451-464

Released	2001-02-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharolobus solfataricus
Macromolecule	GLYCOSYLTREHALOSE TREHALOHYDROLASE (protein)

Explore in 3D

1IEJ \| pdb_00001iej	Download File View File

OVOTRANSFERRIN, N-TERMINAL LOBE, HOLO FORM, AT 1.65 A RESOLUTION

Mizutani, K., Mikami, B., Hirose, M.

(2001) J Mol Biology 309: 937-947

Released	2001-06-20
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Gallus gallus
Macromolecule	OVOTRANSFERRIN (protein)
Unique Ligands	CO3, FE

Explore in 3D

1IQ7 \| pdb_00001iq7	Download File View File

Ovotransferrin, C-Terminal Lobe, Apo Form

Mizutani, K., Muralidhara, B.K., Yamashita, H., Tabata, S., Mikami, B., Hirose, M.

(2001) J Biological Chem 276: 35940-35946

Released	2001-11-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Gallus gallus
Macromolecule	Ovotransferrin (protein)
Unique Ligands	NAG, SO4

Explore in 3D

1JTI \| pdb_00001jti	Download File View File

Loop-inserted Structure of P1-P1' Cleaved Ovalbumin Mutant R339T

Yamasaki, M., Arii, Y., Mikami, B., Hirose, M.

(2002) J Mol Biology 315: 113-120

Released	2001-09-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Gallus gallus
Macromolecule	Ovalbumin (protein)

Explore in 3D

1NFT \| pdb_00001nft	Download File View File

OVOTRANSFERRIN, N-TERMINAL LOBE, IRON LOADED OPEN FORM

Mizutani, K., Yamashita, H., Kurokawa, H., Mikami, B., Hirose, M.

(1999) J Biological Chem 274: 10190-10194

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	PROTEIN (OVOTRANSFERRIN) (protein)
Unique Ligands	FE, NTA, SO4

Explore in 3D

1NNT \| pdb_00001nnt	Download File View File

STRUCTURAL EVIDENCE FOR A PH-SENSITIVE DI-LYSINE TRIGGER IN THE HEN OVOTRANSFERRIN N-LOBE: IMPLICATIONS FOR TRANSFERRIN IRON RELEASE

Dewan, J.C., Mikami, B., Sacchettini, J.C.

(1993) Biochemistry 32: 11963-11968

Released	1994-10-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Gallus gallus
Macromolecule	OVOTRANSFERRIN (protein)
Unique Ligands	CO3, FE

Explore in 3D

1OVT \| pdb_00001ovt	Download File View File

REFINED CRYSTALLOGRAPHIC STRUCTURE OF HEN OVOTRANSFERRIN AT 2.4 ANGSTROMS RESOLUTION

Kurokawa, H., Mikami, B., Hirose, M.

(1995) J Mol Biology 254: 196-207

Released	1995-09-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Gallus gallus
Macromolecule	OVOTRANSFERRIN (protein)
Unique Ligands	CO3, FE

Explore in 3D

1TFA \| pdb_00001tfa	Download File View File

OVOTRANSFERRIN, N-TERMINAL LOBE, APO FORM

Mizutani, K., Yamashita, H., Mikami, B., Hirose, M.

(1999) J Biological Chem 274: 10190-10194

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	PROTEIN (OVOTRANSFERRIN) (protein)
Unique Ligands	SO4

Explore in 3D

1UHG \| pdb_00001uhg	Download File View File

Crystal Structure of S-Ovalbumin At 1.9 Angstrom Resolution

Yamasaki, M., Takahashi, N., Hirose, M.

(2003) J Biological Chem 278: 35524-35530

Released	2003-07-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	Ovalbumin (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	NAG

Explore in 3D

1V7M \| pdb_00001v7m	Download File View File

Human Thrombopoietin Functional Domain Complexed To Neutralizing Antibody TN1 Fab

Feese, M.D., Tamada, T., Kato, Y., Maeda, Y., Hirose, M., Matsukura, Y., Shigematsu, H., Kato, T., Miyazaki, H., Kuroki, R.

(2004) Proc Natl Acad Sci U S A 101: 1816-1821

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Monoclonal TN1 Fab Heavy Chain (protein) Monoclonal TN1 Fab Light Chain (protein) Thrombopoietin (protein)

Explore in 3D

1V7N \| pdb_00001v7n	Download File View File

Human Thrombopoietin Functional Domain Complexed To Neutralizing Antibody TN1 Fab

Feese, M.D., Tamada, T., Kato, Y., Maeda, Y., Hirose, M., Matsukura, Y., Shigematsu, H., Kato, T., Miyazaki, H., Kuroki, R.

(2004) Proc Natl Acad Sci U S A 101: 1816-1821

Released	2004-03-02
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Monoclonal TN1 Fab Heavy Chain (protein) Monoclonal TN1 Fab Light Chain (protein) Thrombopoietin (protein)