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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Jones, M."

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Search Summary

This query matches 318 Structures.

Refinements

Structure Determination Methodology

experimental (318)

Scientific Name of Source Organism

	Pyrococcus horikoshii OT3 (132)
	Thermus thermophilus HB8 (69)
	Pyrococcus horikoshii (30)
	Thermus thermophilus (22)
	Agaricales sp. 'Arthromyces ramosus (6)
	Homo sapiens (6)
	Rattus norvegicus (6)
	Aquifex aeolicus (5)
	Aquifex aeolicus VF5 (5)
	Geobacillus stearothermophilus (5)

More...

Taxonomy

	Archaea (175)
	Bacteria (115)
	Eukaryota (28)

Experimental Method

X-RAY DIFFRACTION (318)

Polymer Entity Type

Protein (318)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (26)
	1.5 - 2.0 (145)
	2.0 - 2.5 (118)
	2.5 - 3.0 (20)
	3.0 - 3.5 (2)
	3.5 - 4.0 (2)
	4.0 - 4.5 (2)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (10)
	2000 - 2004 (30)
	2005 - 2009 (251)
	2010 - 2014 (16)
	2015 - 2019 (10)

Enzyme Classification Name

	Transferases (95)
	Hydrolases (44)
	Oxidoreductases (33)
	Ligases (29)
	Lyases (20)
	Isomerases (16)

Symmetry Type

	Cyclic (211)
	Asymmetric (79)
	Dihedral (47)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (172)
	Alpha and beta proteins (a+b) (68)
	All beta proteins (49)
	All alpha proteins (23)
	Artifacts (4)
	Multi-domain proteins (alpha and beta) (3)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 318 Structures

Page 1 of 13

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1AF3 \| pdb_00001af3	Download File View File

RAT BCL-XL AN APOPTOSIS INHIBITORY PROTEIN

Aritomi, M., Kunishima, N., Inohara, N., Ishibashi, Y., Ohta, S., Morikawa, K.

(1997) J Biological Chem 272: 27886-27892

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	APOPTOSIS REGULATOR BCL-X (protein)

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1ARP \| pdb_00001arp	Download File View File

Crystal structure of the fungal peroxidase from Arthromyces ramosus at 1.9 angstroms resolution: structural comparisons with the lignin and cytochrome C peroxidases

Kunishima, N., Fukuyama, K.

(1994) J Mol Biology 235: 331-344

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Penicillium janthinellum
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, HEM
Unique branched monosaccharides	NAG

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1ARU \| pdb_00001aru	Download File View File

CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS

Fukuyama, K., Kunishima, N., Amada, F.

(1995) J Biological Chem 270: 21884-21892

Released	1996-01-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, CYN, HEM
Unique branched monosaccharides	NAG

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1ARV \| pdb_00001arv	Download File View File

CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS

Fukuyama, K., Kunishima, N., Amada, F.

(1995) J Biological Chem 270: 21884-21892

Released	1996-01-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, CYN, HEM
Unique branched monosaccharides	NAG

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1ARW \| pdb_00001arw	Download File View File

CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS

Fukuyama, K., Kunishima, N., Amada, F.

(1995) J Biological Chem 270: 21884-21892

Released	1996-01-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, CYN, HEM
Unique branched monosaccharides	NAG

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1ARX \| pdb_00001arx	Download File View File

CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS

Fukuyama, K., Kunishima, N., Amada, F.

(1995) J Biological Chem 270: 21884-21892

Released	1996-01-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, HEM, IOD, K
Unique branched monosaccharides	NAG

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1ARY \| pdb_00001ary	Download File View File

CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS

Fukuyama, K., Kunishima, N., Amada, F.

(1995) J Biological Chem 270: 21884-21892

Released	1996-01-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, HEM, IOD, K
Unique branched monosaccharides	NAG

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1CD9 \| pdb_00001cd9	Download File View File

2:2 COMPLEX OF G-CSF WITH ITS RECEPTOR

Aritomi, M., Kunishima, N., Okamoto, T., Kuroki, R., Ota, Y., Morikawa, K.

(1999) Nature 401: 713-717

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	PROTEIN (G-CSF RECEPTOR) (protein) PROTEIN (GRANULOCYTE COLONY-STIMULATING FACTOR) (protein)
Unique Ligands	NAG

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1EWK \| pdb_00001ewk	Download File View File

CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 COMPLEXED WITH GLUTAMATE

Kunishima, N., Shimada, Y., Jingami, H., Morikawa, K.

(2000) Nature 407: 971-977

Released	2000-12-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rattus norvegicus
Macromolecule	METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 (protein)
Unique Ligands	EPE, GLU, MG, NAG

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1EWT \| pdb_00001ewt	Download File View File

CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 LIGAND FREE FORM I

Kunishima, N., Shimada, Y., Tsuji, Y., Jingami, H., Morikawa, K.

(2000) Nature 407: 971-977

Released	2000-12-18
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Rattus norvegicus
Macromolecule	METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 (protein)
Unique Ligands	NAG, SO4

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1EWV \| pdb_00001ewv	Download File View File

CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 LIGAND FREE FORM II

Kunishima, N., Shimada, Y., Tsuji, Y., Jingami, H., Morikawa, K.

(2000) Nature 407: 971-977

Released	2000-12-18
Method	X-RAY DIFFRACTION 4 Å
Organisms	Rattus norvegicus
Macromolecule	METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 (protein)

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1GZB \| pdb_00001gzb	Download File View File

PEROXIDASE

Fukuyama, K., Kunishima, N., Amada, F.

(1996) FEBS Lett 378: 291-294

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, HEM
Unique branched monosaccharides	NAG

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1HQC \| pdb_00001hqc	Download File View File

STRUCTURE OF RUVB FROM THERMUS THERMOPHILUS HB8

Yamada, K., Kunishima, N., Mayanagi, K., Iwasaki, H., Morikawa, K.

(2001) Proc Natl Acad Sci U S A 98: 1442-1447

Released	2001-02-21
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermus thermophilus
Macromolecule	RUVB (protein)
Unique Ligands	ADE, MG

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1ISR \| pdb_00001isr	Download File View File

Crystal Structure of Metabotropic Glutamate Receptor Subtype 1 Complexed with Glutamate and Gadolinium Ion

Tsuchiya, D., Kunishima, N., Kamiya, N., Jingami, H., Morikawa, K.

(2002) Proc Natl Acad Sci U S A 99: 2660-2665

Released	2002-03-13
Method	X-RAY DIFFRACTION 4 Å
Organisms	Rattus norvegicus
Macromolecule	Metabotropic Glutamate Receptor subtype 1 (protein)
Unique Ligands	GD, GLU

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1ISS \| pdb_00001iss	Download File View File

Crystal Structure of Metabotropic Glutamate Receptor Subtype 1 Complexed with an antagonist

Tsuchiya, D., Kunishima, N., Kamiya, N., Jingami, H., Morikawa, K.

(2002) Proc Natl Acad Sci U S A 99: 2660-2665

Released	2002-03-13
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Rattus norvegicus
Macromolecule	Metabotropic Glutamate Receptor subtype 1 (protein)
Unique Ligands	MCG

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1J1Y \| pdb_00001j1y	Download File View File

Crystal Structure of PaaI from Thermus thermophilus HB8

Kunishima, N., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Mol Biology 352: 212-228

Released	2004-02-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus HB8
Macromolecule	PaaI protein (protein)
Unique Ligands	CL, MG

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1J2W \| pdb_00001j2w	Download File View File

Tetrameric Structure of aldolase from Thermus thermophilus HB8

Lokanath, N.K., Shiromizu, I., Miyano, M., Yokoyama, S., Kuramitsu, S., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Acta Crystallogr D Biol Crystallogr 60: 1816-1823

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus
Macromolecule	Aldolase protein (protein)

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1J33 \| pdb_00001j33	Download File View File

Crystal structure of CobT from Thermus thermophilus HB8

Kunishima, N., Asada, Y., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-02-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	CobT (protein)

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1J3B \| pdb_00001j3b	Download File View File

Crystal structure of ATP-dependent phosphoenolpyruvate carboxykinase from Thermus thermophilus HB8

Sugahara, M., Miyano, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Acta Crystallogr D Biol Crystallogr 61: 1500-1507

Released	2003-02-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ATP-dependent phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	CA, GOL, PO4

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1J3W \| pdb_00001j3w	Download File View File

Structure of Gliding protein-mglB from Thermus Thermophilus HB8

Lokanath, N.K., Kunishima, N., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Giding protein-mglB (protein)
Unique Ligands	MES, MG, SO4

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1KVD \| pdb_00001kvd	Download File View File

KILLER TOXIN FROM HALOTOLERANT YEAST

Kashiwagi, T., Kunishima, N., Suzuki, C., Tsuchiya, F., Nikkuni, S., Arata, Y., Morikawa, K.

(1997) Structure 5: 81-94

Released	1997-04-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Millerozyma farinosa
Macromolecule	SMK TOXIN (protein)
Unique Ligands	SO4

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1KVE \| pdb_00001kve	Download File View File

KILLER TOXIN FROM HALOTOLERANT YEAST

Kashiwagi, T., Kunishima, N., Suzuki, C., Tsuchiya, F., Nikkuni, S., Arata, Y., Morikawa, K.

(1997) Structure 5: 81-94

Released	1997-04-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Millerozyma farinosa
Macromolecule	SMK TOXIN (protein)

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1PGR \| pdb_00001pgr	Download File View File

2:2 COMPLEX OF G-CSF WITH ITS RECEPTOR

Aritomi, M., Kunishima, N., Okamoto, T., Kuroki, R., Ota, Y., Morikawa, K.

(1999) Nature 401: 713-717

Released	2000-03-08
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	PROTEIN (G-CSF RECEPTOR) (protein) PROTEIN (GRANULOCYTE COLONY-STIMULATING FACTOR) (protein)

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1TUO \| pdb_00001tuo	Download File View File

Crystal structure of putative phosphomannomutase from Thermus Thermophilus HB8

Misaki, S., Suzuki, S., Fujimoto, S., Sakurai, M., Kobayashi, M., Nishijima, K., Kunishima, N., Sugawara, M., Kuroishi, C., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-08-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus
Macromolecule	Putative phosphomannomutase (protein)

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1UAY \| pdb_00001uay	Download File View File

Crystal Structure of Type II 3-Hydroxyacyl-CoA Dehydrogenase from Thermus thermophilus HB8

Kunishima, N., Asada, Y., Yokoyama, S., Kuramitsu, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-04-15
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Type II 3-hydroxyacyl-CoA dehydrogenase (protein)
Unique Ligands	ADN

1 to 25 of 318 Structures

Page 1 of 13

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AF3 | pdb_00001af3

1ARP | pdb_00001arp

1ARU | pdb_00001aru

1ARV | pdb_00001arv

1ARW | pdb_00001arw

1ARX | pdb_00001arx

1ARY | pdb_00001ary

1CD9 | pdb_00001cd9

1EWK | pdb_00001ewk

1EWT | pdb_00001ewt

1EWV | pdb_00001ewv

1GZB | pdb_00001gzb

1HQC | pdb_00001hqc

1ISR | pdb_00001isr

1ISS | pdb_00001iss

1J1Y | pdb_00001j1y

1J2W | pdb_00001j2w

1J33 | pdb_00001j33

1J3B | pdb_00001j3b

1J3W | pdb_00001j3w

1KVD | pdb_00001kvd

1KVE | pdb_00001kve

1PGR | pdb_00001pgr

1TUO | pdb_00001tuo

1UAY | pdb_00001uay