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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kashima, A."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Homo sapiens (7)
	Mus musculus (6)
	Bacillus sp. YM-1 (2)
	Bos taurus (2)
	Canis lupus familiaris (2)
	Thermus thermophilus HB8 (2)
	Saccharomyces cerevisiae (1)
	Streptomyces sp. X-119-6 (1)

Taxonomy

	Eukaryota (18)
	Bacteria (5)

Experimental Method

	X-RAY DIFFRACTION (19)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (6)
	2.5 - 3.0 (8)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (1)
	2005 - 2009 (2)
	2015 - 2019 (7)
	2020 - 2024 (7)

Enzyme Classification Name

	Hydrolases (11)
	Oxidoreductases (5)
	Transferases (2)
	Isomerases (1)

Membrane Protein Annotation

	MemProtMD (2)
	OPM (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (15)
	Cyclic (8)
	Dihedral (1)

SCOP Classification

	All beta proteins (3)
	Alpha and beta proteins (a/b) (2)
	All alpha proteins (2)
	Multi-domain proteins (alpha and beta) (2)
	Artifacts (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 23 of 23 Structures

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1A0G \| pdb_00001a0g	Download File View File

L201A MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE-5'-PHOSPHATE

Sugio, S., Kashima, A., Kishimoto, K., Peisach, D., Petsko, G.A., Ringe, D., Yoshimura, T., Esaki, N.

(1998) Protein Eng 11: 613-619

Released	1998-06-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus sp. YM-1
Macromolecule	D-AMINO ACID AMINOTRANSFERASE (protein)
Unique Ligands	PMP

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1AB9 \| pdb_00001ab9	Download File View File

CRYSTAL STRUCTURE OF BOVINE GAMMA-CHYMOTRYPSIN

Sugio, S., Kashima, A., Inoue, Y., Maeda, I., Nose, T., Shimohigashi, Y.

(1998) Eur J Biochem 255: 12-23

Released	1997-08-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bos taurus
Macromolecule	GAMMA-CHYMOTRYPSIN (protein) PENTAPEPTIDE (TPGVY) (protein)
Unique Ligands	SO4

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1AFQ \| pdb_00001afq	Download File View File

CRYSTAL STRUCTURE OF BOVINE GAMMA-CHYMOTRYPSIN COMPLEXED WITH A SYNTHETIC INHIBITOR

Sugio, S., Kashima, A., Inoue, Y., Maeda, I., Nose, T., Shimohigashi, Y.

(1998) Eur J Biochem 255: 12-23

Released	1997-09-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	BOVINE GAMMA-CHYMOTRYPSIN (protein)
Unique Ligands	0FG, SO4

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1AO6 \| pdb_00001ao6	Download File View File

CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN

Sugio, S., Mochizuki, S., Noda, M., Kashima, A.

(1999) Protein Eng 12: 439-446

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	SERUM ALBUMIN (protein)

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1BM0 \| pdb_00001bm0	Download File View File

CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN

Sugio, S., Kashima, A., Mochizuki, S., Noda, M., Kobayashi, K.

(1999) Protein Eng 12: 439-446

Released	1999-07-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	SERUM ALBUMIN (protein)

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1IST \| pdb_00001ist	Download File View File

Crystal structure of yeast cyclophilin A, CPR1

Konno, M., Kashima, A., Yoshikawa-Fujioka, S.

To be published

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cyclophilin A (protein)

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1WRM \| pdb_00001wrm	Download File View File

Crystal structure of JSP-1

Yokota, T., Kashima, A., Kato, R., Sugio, S.

(2006) Proteins 66: 272-278

Released	2005-10-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	dual specificity phosphatase 22 (protein)
Unique Ligands	MES

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2DAB \| pdb_00002dab	Download File View File

L201A MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAL-5'-PHOSPHATE

Sugio, S., Kashima, A., Kishimoto, K., Peisach, D., Petsko, G.A., Ringe, D., Yoshimura, T., Esaki, N.

(1998) Protein Eng 11: 613-619

Released	1998-06-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus sp. YM-1
Macromolecule	D-AMINO ACID AMINOTRANSFERASE (protein)
Unique Ligands	PLP

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2E1M \| pdb_00002e1m	Download File View File

Crystal Structure of L-Glutamate Oxidase from Streptomyces sp. X-119-6

Sasaki, C., Kashima, A., Sakaguchi, C., Mizuno, H., Arima, J., Kusakabe, H., Tamura, T., Sugio, S., Inagaki, K.

(2009) FEBS J 276: 4318-4327

Released	2007-11-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptomyces sp. X-119-6
Macromolecule	L-glutamate oxidase (protein)
Unique Ligands	FAD, PO4

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4YVF \| pdb_00004yvf	Download File View File

Structure of S-adenosyl-L-homocysteine hydrolase

Akiko, K.

(2015) Bioorg Med Chem 23: 4952-4969

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Adenosylhomocysteinase (protein)
Unique Ligands	NAI, XFA

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5AWW \| pdb_00005aww	Download File View File

Precise Resting State of Thermus thermophilus SecYEG

Tanaka, Y., Sugano, Y., Takemoto, M., Kusakizako, T., Kumazaki, K., Ishitani, R., Nureki, O., Tsukazaki, T.

(2015) Cell Rep 13: 1561-1568

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.724 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Protein translocase subunit SecE (protein) Protein translocase subunit SecY (protein) Putative preprotein translocase, SecG subunit (protein)
Unique Ligands	OLC

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5CH4 \| pdb_00005ch4	Download File View File

Peptide-Bound State of Thermus thermophilus SecYEG

Tanaka, Y., Sugano, Y., Takemoto, M., Kusakizako, T., Kumazaki, K., Ishitani, R., Nureki, O., Tsukazaki, T.

(2015) Cell Rep 13: 1561-1568

Released	2015-11-25
Method	X-RAY DIFFRACTION 3.64 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Protein translocase subunit SecE (protein) Protein translocase subunit SecY (protein) Putative preprotein translocase, SecG subunit (protein)

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5LAE \| pdb_00005lae	Download File View File

Crystal structure of murine N1-acetylpolyamine oxidase

Sjogren, T., Aagaard, A., Snijder, A., Barlind, L.

(2017) Biochemistry 56: 458-467

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mus musculus
Macromolecule	Peroxisomal N(1)-acetyl-spermine/spermidine oxidase,Peroxisomal N(1)-acetyl-spermine/spermidine oxidase (protein)
Unique Ligands	FAD, GOL

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5LFO \| pdb_00005lfo	Download File View File

Crystal structure of murine N1-acetylpolyamine oxidase in complex with N1-acetylspermine

Sjogren, T., Aagaard, A., Wassvik, C., Snijder, A., Barlind, L.

(2017) Biochemistry 56: 458-467

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Mus musculus
Macromolecule	Peroxisomal N(1)-acetyl-spermine/spermidine oxidase,Peroxisomal N(1)-acetyl-spermine/spermidine oxidase (protein)
Unique Ligands	FAD, GOL, SP5

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5LGB \| pdb_00005lgb	Download File View File

Crystal structure of murine N1-acetylpolyamine oxidase in complex with MDL72527

Sjogren, T., Aagaard, A., Wassvik, C., Snijder, A., Barlind, L.

(2017) Biochemistry 56: 458-467

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	Peroxisomal N(1)-acetyl-spermine/spermidine oxidase,Peroxisomal N(1)-acetyl-spermine/spermidine oxidase (protein)
Unique Ligands	6YU, MD2

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5MBX \| pdb_00005mbx	Download File View File

Crystal structure of reduced murine N1-acetylpolyamine oxidase in complex with N1-acetylspermine

Sjogren, T., Aagaard, A., Wassvik, C., Snijder, A., Barlind, L.

(2017) Biochemistry 56: 458-467

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Mus musculus
Macromolecule	Peroxisomal N(1)-acetyl-spermine/spermidine oxidase (protein)
Unique Ligands	FAD, SO4, SP5