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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Knuth, M.W."

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Search Summary

This query matches 115 Structures.

Refinements

Structure Determination Methodology

experimental (115)

Scientific Name of Source Organism

	Homo sapiens (10)
	Bacteroides ovatus ATCC 8483 (9)
	Bacteroides thetaiotaomicron VPI-5482 (7)
	Bacteroides fragilis NCTC 9343 (5)
	Haemophilus influenzae (5)
	Thermotoga maritima (5)
	Bacteroides uniformis ATCC 8492 (4)
	Parabacteroides distasonis ATCC 8503 (4)
	Thermotoga maritima MSB8 (4)
	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (3)

More...

Taxonomy

	Bacteria (99)
	Eukaryota (11)
	Archaea (4)
	other sequences (2)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (115)

Polymer Entity Type

Protein (115)

Refinement Resolution (Å)

	1.0 - 1.5 (15)
	1.5 - 2.0 (46)
	2.0 - 2.5 (39)
	2.5 - 3.0 (14)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (11)
	2005 - 2009 (66)
	2010 - 2014 (35)
	2015 - 2019 (1)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (14)
	Transferases (8)
	Oxidoreductases (5)
	Ligases (4)
	Isomerases (1)

Symmetry Type

	Asymmetric (69)
	Cyclic (50)
	Dihedral (9)

SCOP Classification

	Alpha and beta proteins (a/b) (21)
	All beta proteins (12)
	Alpha and beta proteins (a+b) (18)
	Artifacts (16)
	All alpha proteins (8)
	Small proteins (2)

AllSelected

1 to 25 of 115 Structures

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1MP8 \| pdb_00001mp8	Download File View File

Crystal structure of Focal Adhesion Kinase (FAK)

Nowakowski, J., Cronin, C.N., McRee, D.E., Knuth, M.W., Nelson, C.G., Pavletich, N.P., Rodgers, J., Sang, B.-C., Scheibe, D.N., Swanson, R.V., Thompson, D.A.

(2002) Structure 10: 1659-1667

Released	2003-09-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	focal adhesion kinase 1 (protein)
Unique Ligands	ADP

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1MQ4 \| pdb_00001mq4	Download File View File

Crystal Structure of Aurora-A Protein Kinase

Nowakowski, J., Cronin, C.N., McRee, D.E., Knuth, M.W., Nelson, C., Pavletich, N.P., Rodgers, J., Sang, B.-C., Scheibe, D.N., Swanson, R.V., Thompson, D.A.

(2002) Structure 10: 1659-1667

Released	2003-09-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	AURORA-RELATED KINASE 1 (protein)
Unique Ligands	ADP, MG, PO4

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1MQB \| pdb_00001mqb	Download File View File

Crystal Structure of Ephrin A2 (ephA2) Receptor Protein Kinase

Nowakowski, J., Cronin, C.N., McRee, D.E., Knuth, M.W., Nelson, C., Pavletich, N., Rogers, J., Sang, B.C., Scheibe, D.N., Swanson, R.V., Thompson, D.A.

(2003) Structure 10: 1659-1667

Released	2003-09-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Ephrin type-A receptor 2 (protein)
Unique Ligands	ANP

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1P31 \| pdb_00001p31	Download File View File

Crystal Structure of UDP-N-acetylmuramic acid:L-alanine Ligase (MurC) from Haemophilus influenzae

Mol, C.D., Brooun, A., Dougan, D.R., Hilgers, M.T., Tari, L.W., Wijnands, R.A., Knuth, M.W., McRee, D.E., Swanson, R.V.

(2003) J Bacteriol 185: 4152-4162

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Haemophilus influenzae
Macromolecule	UDP-N-acetylmuramate--alanine ligase (protein)
Unique Ligands	EPU, MG

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1P3D \| pdb_00001p3d	Download File View File

Crystal Structure of UDP-N-acetylmuramic acid:L-alanine ligase (MurC) in Complex with UMA and ANP.

Mol, C.D., Brooun, A., Dougan, D.R., Hilgers, M.T., Tari, L.W., Wijnands, R.A., Knuth, M.W., McRee, D.E., Swanson, R.V.

(2003) J Bacteriol 185: 4152-4162

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Haemophilus influenzae
Macromolecule	UDP-N-acetylmuramate--alanine ligase (protein)
Unique Ligands	ANP, MN, UMA

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1P74 \| pdb_00001p74	Download File View File

CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE (AROE) FROM HAEMOPHILUS INFLUENZAE

Ye, S., von Delft, F., Brooun, A., Knuth, M.W., Swanson, R.V., McRee, D.E.

(2003) J Bacteriol 185: 4144-4151

Released	2003-08-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Haemophilus influenzae
Macromolecule	Shikimate 5-dehydrogenase (protein)

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1P77 \| pdb_00001p77	Download File View File

CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE (AROE) FROM HAEMOPHILUS INFLUENZAE

Ye, S., von Delft, F., Brooun, A., Knuth, M.W., Swanson, R.V., McRee, D.E.

(2003) J Bacteriol 185: 4144-4151

Released	2003-08-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Haemophilus influenzae
Macromolecule	Shikimate 5-dehydrogenase (protein)
Unique Ligands	ACT, ATR

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1T64 \| pdb_00001t64	Download File View File

Crystal Structure of human HDAC8 complexed with Trichostatin A

Somoza, J.R., Skene, R.J., Katz, B.A., Mol, C., Ho, J.D., Jennings, A.J., Luong, C., Arvai, A., Buggy, J.J., Chi, E., Tang, J., Sang, B.-C., Verner, E., Wynands, R., Leahy, E.M., Dougan, D.R., Snell, G., Navre, M., Knuth, M.W., Swanson, R.V., McRee, D.E., Tari, L.W.

(2004) Structure 12: 1325-1334

Released	2004-07-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	CA, NA, TSN, ZN

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1T67 \| pdb_00001t67	Download File View File

Crystal Structure of Human HDAC8 complexed with MS-344

(2004) Structure 12: 1325-1334

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, NA, ZN

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1T69 \| pdb_00001t69	Download File View File

Crystal Structure of human HDAC8 complexed with SAHA

(2004) Structure 12: 1325-1334

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	SHH, ZN

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1VKG \| pdb_00001vkg	Download File View File

Crystal Structure of Human HDAC8 complexed with CRA-19156

(2004) Structure 12: 1325-1334

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	CRI, NA, ZN

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1VR0 \| pdb_00001vr0	Download File View File

Crystal structure of putative 2-phosphosulfolactate phosphatase (15026306) from Clostridium acetobutylicum at 2.6 A resolution

Joint Center for Structural Genomics (JCSG)

(2006) Proteins 65: 771-776

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Clostridium acetobutylicum
Macromolecule	Probable 2-phosphosulfolactate phosphatase (protein)
Unique Ligands	3SL, MG

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1VR3 \| pdb_00001vr3	Download File View File

Crystal structure of Acireductone dioxygenase (13543033) from Mus musculus at 2.06 A resolution

Joint Center for Structural Genomics (JCSG)

(2006) Proteins 64: 808-813

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Mus musculus
Macromolecule	Acireductone dioxygenase (protein)
Unique Ligands	IPA, NI, UNL

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1VR8 \| pdb_00001vr8	Download File View File

Crystal structure of GTP binding regulator (TM1622) from Thermotoga Maritima at 1.75 A resolution

Joint Center for Structural Genomics (JCSG)

(2006) Proteins 65: 777-782

Released	2005-03-15
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Thermotoga maritima
Macromolecule	GTP binding regulator (protein)
Unique Ligands	AZI, GOL

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1VRM \| pdb_00001vrm	Download File View File

Crystal structure of the apbe protein (tm1553) from thermotoga maritima msb8 at 1.58 A resolution

Joint Center for Structural Genomics (JCSG)

(2006) Proteins 64: 1083-1090

Released	2005-03-22
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	hypothetical protein TM1553 (protein)
Unique Ligands	MPD, MRD, UNL

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1Z9F \| pdb_00001z9f	Download File View File

Crystal structure of single stranded DNA-binding protein (TM0604) from Thermotoga maritima at 2.60 A resolution

Joint Center for Structural Genomics (JCSG)

(2006) Proteins 63: 256-260

Released	2005-04-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima
Macromolecule	Single-strand binding protein (protein)

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1ZCZ \| pdb_00001zcz	Download File View File

Crystal structure of Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase (TM1249) from THERMOTOGA MARITIMA at 1.88 A resolution

Joint Center for Structural Genomics (JCSG)

(2008) Proteins 71: 1042-1049

Released	2005-04-26
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Thermotoga maritima
Macromolecule	Bifunctional purine biosynthesis protein purH (protein)
Unique Ligands	K, PG4

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1ZKG \| pdb_00001zkg	Download File View File

Crystal structure of Transcriptional regulator, TETR family (tm1030) from Thermotoga maritima at 2.30 A resolution

Joint Center for Structural Genomics (JCSG)

(2007) Proteins 68: 418-424

Released	2005-07-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	transcriptional regulator, TetR family (protein)
Unique Ligands	UNL

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1ZX8 \| pdb_00001zx8	Download File View File

CRYSTAL STRUCTURE OF an atypical cyclophilin (peptidylprolyl cis-trans isomerase) (TM1367) FROM THERMOTOGA MARITIMA AT 1.90 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

(2006) Proteins 63: 1112-1118

Released	2005-07-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	hypothetical protein TM1367 (protein)
Unique Ligands	1PE, NI

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2A6A \| pdb_00002a6a	Download File View File

Crystal structure of Glycoprotein endopeptidase (tm0874) from THERMOTOGA MARITIMA at 2.50 A resolution

Joint Center for Structural Genomics (JCSG)

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1230-1236

Released	2005-07-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	hypothetical protein TM0874 (protein)
Unique Ligands	UNL

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2ETS \| pdb_00002ets	Download File View File

CRYSTAL STRUCTURE OF A BACTERIAL DOMAIN OF UNKNOWN FUNCTION FROM DUF1798 FAMILY (MW1337) FROM STAPHYLOCOCCUS AUREUS SUBSP. AUREUS AT 2.25 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

(2008) Proteins 71: 1589-1596

Released	2005-11-08
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Staphylococcus aureus subsp. aureus MW2
Macromolecule	hypothetical protein (protein)
Unique Ligands	CL, PO4

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2EVR \| pdb_00002evr	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE GAMMA-D-GLUTAMYL-L-DIAMINO ACID ENDOPEPTIDASE (NPUN_R0659) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.60 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

(2009) Structure 17: 303-313

Released	2005-11-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Nostoc punctiforme PCC 73102
Macromolecule	COG0791: Cell wall-associated hydrolases (invasion-associated proteins) (protein)
Unique Ligands	CL, EDO, NA

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2F46 \| pdb_00002f46	Download File View File

Crystal structure of a putative phosphatase (nma1982) from neisseria meningitidis z2491 at 1.41 A resolution

Joint Center for Structural Genomics (JCSG)

(2007) Proteins 69: 415-421

Released	2006-02-07
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Neisseria meningitidis Z2491
Macromolecule	hypothetical protein (protein)
Unique Ligands	CL, UNL

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2FEA \| pdb_00002fea	Download File View File

Crystal structure of MtnX phosphatase from Bacillus Subtilis at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

(2007) Proteins 69: 433-439

Released	2005-12-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase (protein)
Unique Ligands	EDO, MG, ZN

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2FG0 \| pdb_00002fg0	Download File View File

Crystal structure of a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.79 A resolution

Joint Center for Structural Genomics (JCSG)

(2009) Structure 17: 303-313

Released	2006-01-10
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Nostoc punctiforme PCC 73102
Macromolecule	COG0791: Cell wall-associated hydrolases (invasion-associated proteins) (protein)
Unique Ligands	GOL

1 to 25 of 115 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1MP8 | pdb_00001mp8

1MQ4 | pdb_00001mq4

1MQB | pdb_00001mqb

1P31 | pdb_00001p31

1P3D | pdb_00001p3d

1P74 | pdb_00001p74

1P77 | pdb_00001p77

1T64 | pdb_00001t64

1T67 | pdb_00001t67

1T69 | pdb_00001t69

1VKG | pdb_00001vkg

1VR0 | pdb_00001vr0

1VR3 | pdb_00001vr3

1VR8 | pdb_00001vr8

1VRM | pdb_00001vrm

1Z9F | pdb_00001z9f

1ZCZ | pdb_00001zcz

1ZKG | pdb_00001zkg

1ZX8 | pdb_00001zx8

2A6A | pdb_00002a6a

2ETS | pdb_00002ets

2EVR | pdb_00002evr

2F46 | pdb_00002f46

2FEA | pdb_00002fea

2FG0 | pdb_00002fg0