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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Li, J."

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Search Summary

This query matches 2,073 Structures.

Refinements

Structure Determination Methodology

experimental (2,073)

Scientific Name of Source Organism

	Homo sapiens (950)
	Mus musculus (188)
	Severe acute respiratory syndrome coronavirus 2 (162)
	synthetic construct (98)
	Arabidopsis thaliana (41)
	Rattus norvegicus (40)
	Escherichia coli K-12 (36)
	Escherichia coli (32)
	Saccharomyces cerevisiae (25)
	Saccharomyces cerevisiae S288C (25)

More...

Taxonomy

	Eukaryota (1,379)
	Bacteria (460)
	Riboviria (307)
	other sequences (100)
	Archaea (26)
	Varidnaviria (20)
	Duplodnaviria (18)
	Eukaryota (eukaryotes) (13)
	Monodnaviria (12)
	unclassified sequences (6)

More...

Experimental Method

	X-RAY DIFFRACTION (1,548)
	ELECTRON MICROSCOPY (453)
	SOLUTION NMR (69)
	SOLID-STATE NMR (5)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (2,063)
	DNA (103)
	RNA (29)
	NA-hybrid (2)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (84)
	1.5 - 2.0 (492)
	2.0 - 2.5 (510)
	2.5 - 3.0 (434)
	3.0 - 3.5 (269)
	3.5 - 4.0 (116)
	4.0 - 4.5 (47)
	> 4.5 (47)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (19)
	2000 - 2004 (44)
	2005 - 2009 (120)
	2010 - 2014 (304)
	2015 - 2019 (483)
	2020 - 2024 (1,034)
	2025 - 2029 (65)

Enzyme Classification Name

	Transferases (441)
	Hydrolases (468)
	Oxidoreductases (150)
	Lyases (52)
	Ligases (39)
	Translocases (22)
	Isomerases (26)

Membrane Protein Annotation

	PDBTM (207)
	mpstruc (134)
	MemProtMD (142)
	OPM (88)

Symmetry Type

	Asymmetric (1,218)
	Cyclic (757)
	Dihedral (109)
	Helical (18)
	Icosahedral (9)
	Tetrahedral (3)
	Octahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (185)
	All beta proteins (144)
	Alpha and beta proteins (a+b) (178)
	All alpha proteins (120)
	Artifacts (123)
	Multi-domain proteins (alpha and beta) (22)
	Membrane and cell surface proteins and peptides (17)
	Small proteins (10)
	Coiled coil proteins (2)
	Low resolution protein structures (1)

AllSelected

1 to 25 of 2,073 Structures

Page 1 of 83

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1A5E \| pdb_00001a5e	Download File View File

SOLUTION NMR STRUCTURE OF TUMOR SUPPRESSOR P16INK4A, 18 STRUCTURES

Byeon, I.-J.L., Li, J., Ericson, K., Selby, T.L., Tevelev, A., Kim, H.-J., O'Maille, P., Tsai, M.-D.

(1998) Mol Cell 1: 421-431

Released	1999-08-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TUMOR SUPPRESSOR P16INK4A (protein)

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1B34 \| pdb_00001b34	Download File View File

CRYSTAL STRUCTURE OF THE D1D2 SUB-COMPLEX FROM THE HUMAN SNRNP CORE DOMAIN

Walke, S., Young, R.J., Kambach, C., Avis, J.M., De La Fortelle, E., Li, J., Nagai, K.

(1999) Cell 96: 375-387

Released	2000-01-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1) (protein) PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2) (protein)

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1BU9 \| pdb_00001bu9	Download File View File

SOLUTION STRUCTURE OF P18-INK4C, 21 STRUCTURES

Byeon, I.-J.L., Li, J., Tsai, M.-D.

(1999) Biochemistry 38: 2930-2940

Released	1999-09-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (CYCLIN-DEPENDENT KINASE 6 INHIBITOR) (protein)

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1BWP \| pdb_00001bwp	Download File View File

PROBING THE SUBSTRATE SPECIFICITY OF THE INTRACELLULAR BRAIN PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE

Ho, Y.S., Sheffield, P.J., Masuyama, J., Arai, H., Li, J., Aoki, J., Inoue, K., Derewenda, U., Derewenda, Z.

(1999) Protein Eng 12: 693-700

Released	1999-05-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE (protein)

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1BWQ \| pdb_00001bwq	Download File View File

PROBING THE SUBSTRATE SPECIFICITY OF THE INTRACELLULAR BRAIN PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE

Ho, Y.S., Sheffield, P.J., Masuyama, J., Arai, H., Li, J., Aoki, J., Inoue, K., Derewenda, U., Derewenda, Z.

(1999) Protein Eng 12: 693-700

Released	1999-05-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE (protein)

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1BWR \| pdb_00001bwr	Download File View File

PROBING THE SUBSTRATE SPECIFICITY OF THE INTRACELLULAR BRAIN PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE

Ho, Y.S., Sheffield, P.J., Masuyama, J., Arai, H., Li, J., Aoki, J., Inoue, K., Derewenda, U., Derewenda, Z.

(1999) Protein Eng 12: 693-700

Released	1999-05-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE (protein)

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1C8U \| pdb_00001c8u	Download File View File

CRYSTAL STRUCTURE OF THE E.COLI THIOESTERASE II, A HOMOLOGUE OF THE HUMAN NEF-BINDING ENZYME

Li, J., Derewenda, Z.S.

(2000) Nat Struct Biol 7: 555-559

Released	2000-07-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	ACYL-COA THIOESTERASE II (protein)
Unique Ligands	LDA

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1CBY \| pdb_00001cby	Download File View File

DELTA-ENDOTOXIN

Li, J.

(1996) J Mol Biology 257: 129-152

Released	1996-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus thuringiensis serovar kyushuensis
Macromolecule	DELTA-ENDOTOXIN CYTB (protein)

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1CI5 \| pdb_00001ci5	Download File View File

GLYCAN-FREE MUTANT ADHESION DOMAIN OF HUMAN CD58 (LFA-3)

Sun, Z.Y.J., Dotsch, V., Kim, M., Li, J., Reinherz, E.L., Wagner, G.

(1999) EMBO J 18: 2941-2949

Released	1999-06-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYMPHOCYTE FUNCTION-ASSOCIATED ANTIGEN 3(CD58)) (protein)

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1COY \| pdb_00001coy	Download File View File

CRYSTAL STRUCTURE OF CHOLESTEROL OXIDASE COMPLEXED WITH A STEROID SUBSTRATE. IMPLICATIONS FOR FAD DEPENDENT ALCOHOL OXIDASES

Li, J., Vrielink, A., Brick, P., Blow, D.M.

(1993) Biochemistry 32: 11507-11515

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Brevibacterium sterolicum
Macromolecule	CHOLESTEROL OXIDASE (protein)
Unique Ligands	AND, FAD

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1CRW \| pdb_00001crw	Download File View File

CRYSTAL STRUCTURE OF APO-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM PALINURUS VERSICOLOR AT 2.0A RESOLUTION

Shen, Y., Li, J., Song, S., Lin, Z.

(2000) J Struct Biol 130: 1-9

Released	2000-09-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Panulirus versicolor
Macromolecule	D-GLYCERALDEHYDE-3-PHOSPHATE-DEHYDROGENASE (protein)

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1D3B \| pdb_00001d3b	Download File View File

CRYSTAL STRUCTURE OF THE D3B SUBCOMPLEX OF THE HUMAN CORE SNRNP DOMAIN AT 2.0A RESOLUTION

Kambach, C., Walke, S., Avis, J.M., De La Fortelle, E., Li, J., Nagai, K.

(1999) Cell 96: 375-387

Released	1999-12-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) (protein) PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3) (protein)
Unique Ligands	CIT, GOL

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1D9S \| pdb_00001d9s	Download File View File

TUMOR SUPPRESSOR P15(INK4B) STRUCTURE BY COMPARATIVE MODELING AND NMR DATA

Yuan, C., Ji, L., Selby, T.L., Byeon, I.J.L., Tsai, M.D.

(1999) J Mol Biology 294: 201-211

Released	2000-07-28
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	CYCLIN-DEPENDENT KINASE 4 INHIBITOR B (protein)

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1DC2 \| pdb_00001dc2	Download File View File

SOLUTION NMR STRUCTURE OF TUMOR SUPPRESSOR P16INK4A, 20 STRUCTURES

Byeon, I.-J.L., Li, J., Yuan, C., Tsai, M.-D.

(2000) Protein Sci 9: 1120-1128

Released	1999-12-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT KINASE 4 INHIBITOR A (P16INK4A) (protein)

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1DLC \| pdb_00001dlc	Download File View File

CRYSTAL STRUCTURE OF INSECTICIDAL DELTA-ENDOTOXIN FROM BACILLUS THURINGIENSIS AT 2.5 ANGSTROMS RESOLUTION

Li, J.

(1991) Nature 353: 815-821

Released	1994-09-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus thuringiensis
Macromolecule	DELTA-ENDOTOXIN CRYIIIA (protein)

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1DSS \| pdb_00001dss	Download File View File

STRUCTURE OF ACTIVE-SITE CARBOXYMETHYLATED D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM PALINURUS VERSICOLOR

Song, S., Lin, Z.

(1999) J Mol Biology 287: 719-725

Released	1998-12-09
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Panulirus versicolor
Macromolecule	D-GLYCERALDEHYDE-3-PHOSPHATE-DEHYDROGENASE (protein)
Unique Ligands	NAD, SO4

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1DUH \| pdb_00001duh	Download File View File

CRYSTAL STRUCTURE OF THE CONSERVED DOMAIN IV OF E. COLI 4.5S RNA

Jovine, L., Hainzl, T., Oubridge, C., Scott, W.G., Li, J., Sixma, T.K., Wonacott, A., Skarzynski, T., Nagai, K.

(2000) Structure 8: 527-540

Released	2000-05-08
Method	X-RAY DIFFRACTION 2.7 Å
Macromolecule	4.5S RNA DOMAIN IV (nucleic acid)
Unique Ligands	LU, MG, SO4

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1ES9 \| pdb_00001es9	Download File View File

X-RAY CRYSTAL STRUCTURE OF R22K MUTANT OF THE MAMMALIAN BRAIN PLATELET-ACTIVATING FACTOR ACETYLHYDROLASES (PAF-AH)

McMullen, T.W.P., Li, J., Sheffield, P.J., Aoki, J., Martin, T.W., Arai, H., Inoue, K., Derewenda, Z.S.

(2000) Protein Eng 13: 865-871

Released	2000-05-31
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Bos taurus
Macromolecule	PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB GAMMA SUBUNIT (protein)

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1FBL \| pdb_00001fbl	Download File View File

STRUCTURE OF FULL-LENGTH PORCINE SYNOVIAL COLLAGENASE (MMP1) REVEALS A C-TERMINAL DOMAIN CONTAINING A CALCIUM-LINKED, FOUR-BLADED BETA-PROPELLER

Li, J., Brick, P., Blow, D.M.

(1995) Structure 3: 541-549

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sus scrofa
Macromolecule	FIBROBLAST (INTERSTITIAL) COLLAGENASE (MMP-1) (protein)
Unique Ligands	CA, HTA, ZN

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1FHT \| pdb_00001fht	Download File View File

RNA-BINDING DOMAIN OF THE U1A SPLICEOSOMAL PROTEIN U1A117, NMR, 43 STRUCTURES

Allain, F.H.-T., Gubser, C.C., Howe, P.W.A., Nagai, K., Neuhaus, D., Varani, G.

(1996) J Mol Biology 257: 398-411

Released	1996-07-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (protein)

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1FXW \| pdb_00001fxw	Download File View File

CRYSTAL STRUCTURE OF THE RECOMBINANT ALPHA1/ALPHA2 CATALYTIC HETERODIMER OF BOVINE BRAIN PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB.

Derewenda, Z., Li, J.

(2001) Protein Eng 14: 513-519

Released	2001-12-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB BETA SUBUNIT (protein) PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB GAMMA SUBUNIT (protein)
Unique Ligands	CA

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1GIS \| pdb_00001gis	Download File View File

A TRICHOSANTHIN(TCS) MUTANT(E85Q) COMPLEX STRUCTURE WITH 2'-DEOXY-ADENOSIN-5'-MONOPHOSPHATE

Guo, Q., Liu, Y., Dong, Y., Rao, Z.

(2003) Protein Eng 16: 391-396

Released	2003-06-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Trichosanthes kirilowii
Macromolecule	RIBOSOME-INACTIVATING PROTEIN ALPHA-TRICHOSANTHIN (protein)
Unique Ligands	D5M

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1GIU \| pdb_00001giu	Download File View File

A TRICHOSANTHIN(TCS) MUTANT(E85R) COMPLEX STRUCTURE WITH ADENINE

Guo, Q., Liu, Y., Dong, Y., Rao, Z.

(2003) Protein Eng 16: 391-396

Released	2003-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Trichosanthes kirilowii
Macromolecule	RIBOSOME-INACTIVATING PROTEIN ALPHA-TRICHOSANTHIN (protein)
Unique Ligands	ADE

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1GXC \| pdb_00001gxc	Download File View File

FHA domain from human Chk2 kinase in complex with a synthetic phosphopeptide

Li, J., Williams, B.L., Haire, L.F., Goldberg, M., Wilker, E., Durocher, D., Yaffe, M.B., Jackson, S.P., Smerdon, S.J.

(2002) Mol Cell 9: 1045

Released	2002-06-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	SERINE/THREONINE-PROTEIN KINASE CHK2 (protein) SYNTHETIC PHOSPHOPEPTIDE (protein)