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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Li, S."

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Search Summary

This query matches 118 Structures.

Refinements

Structure Determination Methodology

experimental (118)

Scientific Name of Source Organism

	Homo sapiens (23)
	Enterococcus hirae ATCC 9790 (9)
	Alcaligenes faecalis (8)
	Aspergillus aculeatus (7)
	Arthrobacter globiformis (6)
	Enterococcus hirae (6)
	Mus musculus (5)
	actinomycete K97-0003 (5)
	Aerococcus viridans (4)
	Priestia megaterium (4)

More...

Taxonomy

	Bacteria (59)
	Eukaryota (44)
	Archaea (5)
	other sequences (4)
	Riboviria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (103)
	ELECTRON MICROSCOPY (9)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (112)
	DNA (9)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (35)
	2.0 - 2.5 (30)
	2.5 - 3.0 (19)
	3.0 - 3.5 (12)
	3.5 - 4.0 (4)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (22)
	2010 - 2014 (39)
	2015 - 2019 (20)
	2020 - 2024 (33)

Enzyme Classification Name

	Hydrolases (31)
	Oxidoreductases (29)
	Translocases (16)
	Transferases (5)
	Ligases (3)

Membrane Protein Annotation

	PDBTM (9)
	MemProtMD (3)
	OPM (3)
	mpstruc (3)

Symmetry Type

	Asymmetric (57)
	Cyclic (36)
	Dihedral (20)

SCOP Classification

	Alpha and beta proteins (a/b) (26)
	All beta proteins (24)
	Alpha and beta proteins (a+b) (11)
	All alpha proteins (11)
	Coiled coil proteins (4)
	Artifacts (2)
	Peptides (1)

AllSelected

1 to 25 of 118 Structures

Page 1 of 5

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1JEH \| pdb_00001jeh	Download File View File

CRYSTAL STRUCTURE OF YEAST E3, LIPOAMIDE DEHYDROGENASE

Toyoda, T., Suzuki, K., Sekigushi, T., Reed, J., Takenaka, A.

(1998) J Biochem 123: 668-674

Released	2001-07-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DIHYDROLIPOAMIDE DEHYDROGENASE (protein)
Unique Ligands	FAD

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1KFU \| pdb_00001kfu	Download File View File

Crystal Structure of Human m-Calpain Form II

Strobl, S., Fernandez-Catalan, C., Braun, M., Huber, R., Masumoto, H., Nakagawa, K., Irie, A., Sorimachi, H., Bourenkow, G., Bartunik, H., Suzuki, K., Bode, W.

(2000) Proc Natl Acad Sci U S A 97: 588-592

Released	2001-12-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	M-CALPAIN LARGE SUBUNIT (protein) M-CALPAIN SMALL SUBUNIT (protein)

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1KFX \| pdb_00001kfx	Download File View File

Crystal Structure of Human m-Calpain Form I

Strobl, S., Fernandez-Catalan, C., Braun, M., Huber, R., Masumoto, H., Nakagawa, K., Irie, A., Sorimachi, H., Bourenkow, G., Bartunik, H., Suzuki, K., Bode, W.

(2000) Proc Natl Acad Sci U S A 97: 588-592

Released	2001-12-07
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens
Macromolecule	M-CALPAIN LARGE SUBUNIT (protein) M-CALPAIN SMALL SUBUNIT (protein)

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1V28 \| pdb_00001v28	Download File View File

Solution structure of paralytic peptide of the wild Silkmoth, Antheraea yamamai

Kawaguchi, K., Ying, A., Suzuki, K., Kumaki, Y., Demura, M., Nitta, K.

To be published

Released	2004-10-26
Method	SOLUTION NMR
Organisms	Manduca sexta
Macromolecule	Paralytic Peptide (protein)

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1V53 \| pdb_00001v53	Download File View File

The crystal structure of 3-isopropylmalate dehydrogenase from Bacillus coagulans

Fujita, K., Minami, H., Suzuki, K., Tsunoda, M., Sekiguchi, T., Mizui, R., Tsuzaki, S., Nakamura, S., Takenaka, A.

To be published

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Heyndrickxia coagulans
Macromolecule	3-isopropylmalate dehydrogenase (protein)

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1V59 \| pdb_00001v59	Download File View File

Crystal structure of yeast lipoamide dehydrogenase complexed with NAD+

Adachi, W., Suzuki, K., Tsunoda, M., Sekiguchi, T., Reed, L.J., Takenaka, A.

To be published

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Dihydrolipoamide dehydrogenase (protein)
Unique Ligands	FAD, NAD, PO4

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1V5B \| pdb_00001v5b	Download File View File

The Structure Of The Mutant, S225A and E251L, Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans

Fujita, K., Minami, H., Suzuki, K., Tsunoda, M., Sekiguchi, T., Mizui, R., Tsuzaki, S., Nakamura, S., Takenaka, A.

To be published

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Heyndrickxia coagulans
Macromolecule	3-isopropylmalate dehydrogenase (protein)
Unique Ligands	SO4

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1V5E \| pdb_00001v5e	Download File View File

Crystal Structure of Pyruvate oxidase containing FAD, from Aerococcus viridans

Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

To be published

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Aerococcus viridans
Macromolecule	Pyruvate oxidase (protein)
Unique Ligands	FAD, SO4

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1V5F \| pdb_00001v5f	Download File View File

Crystal Structure of Pyruvate oxidase complexed with FAD and TPP, from Aerococcus viridans

Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 900-907

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aerococcus viridans
Macromolecule	Pyruvate oxidase (protein)
Unique Ligands	FAD, MG, SO4, TPP

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1V5G \| pdb_00001v5g	Download File View File

Crystal Structure of the Reaction Intermediate between Pyruvate oxidase containing FAD and TPP, and Substrate Pyruvate

Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 900-907

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Aerococcus viridans
Macromolecule	Pyruvate oxidase (protein)
Unique Ligands	FAD, HTL, MG

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1VAX \| pdb_00001vax	Download File View File

Crystal Structure of Uricase from Arthrobacter globiformis

Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

To be published

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Arthrobacter globiformis
Macromolecule	Uric acid oxidase (protein)

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1VAY \| pdb_00001vay	Download File View File

Crystal Structure of Uricase from Arthrobacter globiformis with inhibitor 8-azaxanthine

Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

To be published

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Arthrobacter globiformis
Macromolecule	Uric acid oxidase (protein)
Unique Ligands	AZA

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1WYD \| pdb_00001wyd	Download File View File

Crystal Structure of Aspartyl-tRNA synthetase from Sulfolobus tokodaii

Maeda, Y., Hossain, M.T., Ubukata, S., Suzuki, K., Sekiguchi, T., Takenaka, A.

(2007) Acta Crystallogr D Biol Crystallogr 63: 1042-1047

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	hypothetical aspartyl-tRNA synthetase (protein)
Unique Ligands	CL, EPE, SO4

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1WYE \| pdb_00001wye	Download File View File

Crystal structure of 2-keto-3-deoxygluconate kinase (form 1) from Sulfolobus Tokodaii

Toyoda, T., Suzuki, K., Hossain, M.T., Koike, I., Sekiguchi, T., Takenaka, A.

To be published

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	2-keto-3-deoxygluconate kinase (protein)

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2CUY \| pdb_00002cuy	Download File View File

Crystal structure of malonyl CoA-acyl carrier protein transacylase from Thermus thermophilus HB8

Misaki, S., Suzuki, K., Kunishima, N., Sugawara, M., Kuroishi, C., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-06-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Malonyl CoA-[acyl carrier protein] transacylase (protein)